EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000005425 (Gene tree)
Gene ID: 102347300
Gene Symbol: RIF1
Alias: FLJ10599|FLJ12870
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 67838 bases
Position: chrJH128683.1:166987-234824
Accession: 102347300
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000006112	Rif1_N	PF12231.8	1.2e-82	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000006164	RIF1-201	7150	XM_006009737	ENSLACP00000006112	2351 (aa)	XP_006009799	H3A8Z1

Gene Model

Click here to download ENSLACG00000005425's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000005425's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000005425	RIF1	89	63.018	ENSG00000080345	RIF1	94	64.617	Homo_sapiens
ENSLACG00000005425	RIF1	71	50.824	ENSAPOG00000011073	rif1	70	50.070	Acanthochromis_polyacanthus
ENSLACG00000005425	RIF1	91	59.211	ENSAMEG00000008461	RIF1	86	59.211	Ailuropoda_melanoleuca
ENSLACG00000005425	RIF1	67	54.668	ENSACIG00000017765	rif1	69	54.964	Amphilophus_citrinellus
ENSLACG00000005425	RIF1	68	52.056	ENSAOCG00000017231	rif1	65	51.499	Amphiprion_ocellaris
ENSLACG00000005425	RIF1	63	59.033	ENSAPEG00000013228	rif1	63	59.033	Amphiprion_percula
ENSLACG00000005425	RIF1	66	46.417	ENSATEG00000022887	rif1	64	52.716	Anabas_testudineus
ENSLACG00000005425	RIF1	98	50.313	ENSAPLG00000007092	RIF1	99	50.585	Anas_platyrhynchos
ENSLACG00000005425	RIF1	90	58.284	ENSACAG00000003714	RIF1	88	58.029	Anolis_carolinensis
ENSLACG00000005425	RIF1	89	63.095	ENSANAG00000024840	RIF1	85	63.095	Aotus_nancymaae
ENSLACG00000005425	RIF1	99	49.677	ENSAMXG00000010910	rif1	86	55.730	Astyanax_mexicanus
ENSLACG00000005425	RIF1	82	62.687	ENSBTAG00000021020	RIF1	84	62.687	Bos_taurus
ENSLACG00000005425	RIF1	90	61.236	ENSCJAG00000003138	RIF1	86	61.236	Callithrix_jacchus
ENSLACG00000005425	RIF1	89	62.647	ENSCAFG00000005670	RIF1	82	62.647	Canis_familiaris
ENSLACG00000005425	RIF1	89	62.647	ENSCAFG00020016401	RIF1	86	62.647	Canis_lupus_dingo
ENSLACG00000005425	RIF1	90	60.446	ENSCHIG00000020327	RIF1	86	60.446	Capra_hircus
ENSLACG00000005425	RIF1	89	63.772	ENSTSYG00000008861	RIF1	84	63.772	Carlito_syrichta
ENSLACG00000005425	RIF1	72	53.457	ENSCAPG00000008957	RIF1	90	53.457	Cavia_aperea
ENSLACG00000005425	RIF1	75	47.004	ENSCPOG00000037898	RIF1	73	46.815	Cavia_porcellus
ENSLACG00000005425	RIF1	89	63.988	ENSCCAG00000024760	RIF1	85	63.988	Cebus_capucinus
ENSLACG00000005425	RIF1	89	64.286	ENSCATG00000033353	RIF1	85	64.286	Cercocebus_atys
ENSLACG00000005425	RIF1	87	62.798	ENSCLAG00000001517	RIF1	86	62.798	Chinchilla_lanigera
ENSLACG00000005425	RIF1	92	56.892	ENSCSAG00000016089	RIF1	86	56.892	Chlorocebus_sabaeus
ENSLACG00000005425	RIF1	86	62.611	ENSCHOG00000007187	RIF1	82	62.611	Choloepus_hoffmanni
ENSLACG00000005425	RIF1	94	61.675	ENSCPBG00000025885	RIF1	97	62.183	Chrysemys_picta_bellii
ENSLACG00000005425	RIF1	84	70.485	ENSCANG00000028962	RIF1	84	70.485	Colobus_angolensis_palliatus
ENSLACG00000005425	RIF1	68	62.908	ENSCGRG00001024589	Rif1	66	62.908	Cricetulus_griseus_chok1gshd
ENSLACG00000005425	RIF1	66	62.908	ENSCGRG00000010713	Rif1	65	62.908	Cricetulus_griseus_crigri
ENSLACG00000005425	RIF1	65	54.576	ENSCSEG00000003945	rif1	67	54.576	Cynoglossus_semilaevis
ENSLACG00000005425	RIF1	76	51.944	ENSDARG00000062650	rif1	66	54.905	Danio_rerio
ENSLACG00000005425	RIF1	88	62.848	ENSDNOG00000011194	RIF1	88	50.277	Dasypus_novemcinctus
ENSLACG00000005425	RIF1	67	58.912	ENSETEG00000012421	RIF1	74	55.031	Echinops_telfairi
ENSLACG00000005425	RIF1	89	60.882	ENSEASG00005023434	RIF1	85	60.882	Equus_asinus_asinus
ENSLACG00000005425	RIF1	89	61.471	ENSECAG00000012679	RIF1	84	62.343	Equus_caballus
ENSLACG00000005425	RIF1	68	54.201	ENSELUG00000006826	rif1	58	54.301	Esox_lucius
ENSLACG00000005425	RIF1	89	63.018	ENSFCAG00000029742	RIF1	85	63.018	Felis_catus
ENSLACG00000005425	RIF1	84	59.003	ENSFALG00000013874	RIF1	74	60.922	Ficedula_albicollis
ENSLACG00000005425	RIF1	52	54.170	ENSFHEG00000013721	rif1	51	54.000	Fundulus_heteroclitus
ENSLACG00000005425	RIF1	58	53.221	ENSGMOG00000003517	rif1	85	53.748	Gadus_morhua
ENSLACG00000005425	RIF1	93	48.075	ENSGALG00000012484	RIF1	99	48.226	Gallus_gallus
ENSLACG00000005425	RIF1	81	52.374	ENSGAFG00000017196	rif1	85	52.520	Gambusia_affinis
ENSLACG00000005425	RIF1	62	57.025	ENSGACG00000008579	rif1	66	53.465	Gasterosteus_aculeatus
ENSLACG00000005425	RIF1	92	63.231	ENSGAGG00000012595	RIF1	96	63.231	Gopherus_agassizii
ENSLACG00000005425	RIF1	56	53.438	ENSHBUG00000007125	rif1	57	53.368	Haplochromis_burtoni
ENSLACG00000005425	RIF1	84	65.500	ENSHGLG00100009807	RIF1	85	65.500	Heterocephalus_glaber_male
ENSLACG00000005425	RIF1	69	53.633	ENSHCOG00000015943	rif1	62	53.712	Hippocampus_comes
ENSLACG00000005425	RIF1	66	57.143	ENSIPUG00000021703	rif1	65	56.352	Ictalurus_punctatus
ENSLACG00000005425	RIF1	89	63.690	ENSSTOG00000020712	RIF1	84	63.690	Ictidomys_tridecemlineatus
ENSLACG00000005425	RIF1	89	62.310	ENSJJAG00000023000	Rif1	86	62.310	Jaculus_jaculus
ENSLACG00000005425	RIF1	67	52.377	ENSKMAG00000002852	rif1	67	52.377	Kryptolebias_marmoratus
ENSLACG00000005425	RIF1	66	54.732	ENSLBEG00000023196	rif1	59	54.732	Labrus_bergylta
ENSLACG00000005425	RIF1	83	51.648	ENSLOCG00000002657	rif1	88	50.305	Lepisosteus_oculatus
ENSLACG00000005425	RIF1	92	55.529	ENSLAFG00000009796	RIF1	88	54.087	Loxodonta_africana
ENSLACG00000005425	RIF1	92	56.892	ENSMFAG00000032233	RIF1	86	56.892	Macaca_fascicularis
ENSLACG00000005425	RIF1	92	56.892	ENSMMUG00000008611	RIF1	86	56.892	Macaca_mulatta
ENSLACG00000005425	RIF1	92	56.892	ENSMNEG00000031616	RIF1	86	56.892	Macaca_nemestrina
ENSLACG00000005425	RIF1	93	56.642	ENSMLEG00000042945	RIF1	88	56.642	Mandrillus_leucophaeus
ENSLACG00000005425	RIF1	67	46.767	ENSMAMG00000001745	rif1	54	58.000	Mastacembelus_armatus
ENSLACG00000005425	RIF1	70	53.614	ENSMZEG00005020920	rif1	72	53.655	Maylandia_zebra
ENSLACG00000005425	RIF1	98	49.274	ENSMGAG00000012732	RIF1	99	49.145	Meleagris_gallopavo
ENSLACG00000005425	RIF1	86	69.337	ENSMAUG00000013158	Rif1	64	69.337	Mesocricetus_auratus
ENSLACG00000005425	RIF1	89	62.985	ENSMICG00000046127	RIF1	85	62.985	Microcebus_murinus
ENSLACG00000005425	RIF1	89	62.391	ENSMOCG00000009381	Rif1	85	62.391	Microtus_ochrogaster
ENSLACG00000005425	RIF1	66	52.044	ENSMMOG00000006519	rif1	64	52.212	Mola_mola
ENSLACG00000005425	RIF1	93	64.392	ENSMODG00000003703	RIF1	91	64.095	Monodelphis_domestica
ENSLACG00000005425	RIF1	70	51.154	ENSMALG00000016759	rif1	77	50.856	Monopterus_albus
ENSLACG00000005425	RIF1	63	61.532	MGP_CAROLIEiJ_G0023555	Rif1	66	61.337	Mus_caroli
ENSLACG00000005425	RIF1	68	62.319	ENSMUSG00000036202	Rif1	66	62.319	Mus_musculus
ENSLACG00000005425	RIF1	63	62.865	MGP_PahariEiJ_G0025006	Rif1	65	62.865	Mus_pahari
ENSLACG00000005425	RIF1	68	62.209	MGP_SPRETEiJ_G0024476	Rif1	66	62.209	Mus_spretus
ENSLACG00000005425	RIF1	89	62.170	ENSMPUG00000000371	RIF1	85	62.170	Mustela_putorius_furo
ENSLACG00000005425	RIF1	78	61.194	ENSMLUG00000003376	RIF1	83	61.194	Myotis_lucifugus
ENSLACG00000005425	RIF1	89	63.095	ENSNGAG00000009268	Rif1	88	63.284	Nannospalax_galili
ENSLACG00000005425	RIF1	66	55.064	ENSNBRG00000014257	rif1	57	52.786	Neolamprologus_brichardi
ENSLACG00000005425	RIF1	91	57.658	ENSNLEG00000010955	RIF1	90	56.757	Nomascus_leucogenys
ENSLACG00000005425	RIF1	83	64.889	ENSMEUG00000007601	-	86	64.889	Notamacropus_eugenii
ENSLACG00000005425	RIF1	89	62.874	ENSODEG00000003950	RIF1	86	62.874	Octodon_degus
ENSLACG00000005425	RIF1	68	67.201	ENSOANG00000006078	-	69	67.107	Ornithorhynchus_anatinus
ENSLACG00000005425	RIF1	89	61.516	ENSOCUG00000017435	RIF1	85	61.516	Oryctolagus_cuniculus
ENSLACG00000005425	RIF1	78	46.119	ENSORLG00020001302	rif1	69	51.522	Oryzias_latipes_hni
ENSLACG00000005425	RIF1	76	45.521	ENSORLG00015000009	rif1	68	52.191	Oryzias_latipes_hsok
ENSLACG00000005425	RIF1	89	64.048	ENSOGAG00000006141	RIF1	84	64.048	Otolemur_garnettii
ENSLACG00000005425	RIF1	90	60.724	ENSOARG00000008930	RIF1	85	60.724	Ovis_aries
ENSLACG00000005425	RIF1	89	62.388	ENSPPAG00000023754	RIF1	85	62.388	Pan_paniscus
ENSLACG00000005425	RIF1	89	63.018	ENSPPRG00000003618	RIF1	85	63.018	Panthera_pardus
ENSLACG00000005425	RIF1	89	63.018	ENSPTIG00000020652	RIF1	85	63.018	Panthera_tigris_altaica
ENSLACG00000005425	RIF1	89	62.687	ENSPTRG00000012534	RIF1	85	62.687	Pan_troglodytes
ENSLACG00000005425	RIF1	92	56.892	ENSPANG00000008525	RIF1	86	56.892	Papio_anubis
ENSLACG00000005425	RIF1	77	53.614	ENSPKIG00000004267	rif1	71	55.646	Paramormyrops_kingsleyae
ENSLACG00000005425	RIF1	76	46.006	ENSPMGG00000016141	rif1	82	47.246	Periophthalmus_magnuspinnatus
ENSLACG00000005425	RIF1	87	63.265	ENSPEMG00000000446	Rif1	85	63.265	Peromyscus_maniculatus_bairdii
ENSLACG00000005425	RIF1	99	49.534	ENSPCIG00000009185	RIF1	99	49.372	Phascolarctos_cinereus
ENSLACG00000005425	RIF1	71	52.460	ENSPLAG00000017945	rif1	99	49.710	Poecilia_latipinna
ENSLACG00000005425	RIF1	75	53.864	ENSPREG00000018052	rif1	83	53.864	Poecilia_reticulata
ENSLACG00000005425	RIF1	89	62.985	ENSPPYG00000012846	RIF1	85	62.985	Pongo_abelii
ENSLACG00000005425	RIF1	72	63.725	ENSPCAG00000009032	RIF1	52	63.725	Procavia_capensis
ENSLACG00000005425	RIF1	89	63.582	ENSPCOG00000027888	RIF1	85	63.582	Propithecus_coquereli
ENSLACG00000005425	RIF1	81	64.906	ENSPVAG00000014276	RIF1	80	64.906	Pteropus_vampyrus
ENSLACG00000005425	RIF1	70	52.262	ENSPNYG00000012940	rif1	71	52.262	Pundamilia_nyererei
ENSLACG00000005425	RIF1	53	56.748	ENSPNAG00000016685	rif1	52	56.843	Pygocentrus_nattereri
ENSLACG00000005425	RIF1	90	61.404	ENSRNOG00000054901	Rif1	86	61.404	Rattus_norvegicus
ENSLACG00000005425	RIF1	91	63.905	ENSRBIG00000003704	RIF1	86	63.905	Rhinopithecus_bieti
ENSLACG00000005425	RIF1	91	63.582	ENSRROG00000028206	RIF1	86	63.582	Rhinopithecus_roxellana
ENSLACG00000005425	RIF1	87	63.690	ENSSBOG00000029530	RIF1	84	63.690	Saimiri_boliviensis_boliviensis
ENSLACG00000005425	RIF1	92	64.841	ENSSHAG00000018552	RIF1	66	64.265	Sarcophilus_harrisii
ENSLACG00000005425	RIF1	67	57.554	ENSSFOG00015021539	rif1	75	57.440	Scleropages_formosus
ENSLACG00000005425	RIF1	67	55.414	ENSSMAG00000011704	rif1	67	50.983	Scophthalmus_maximus
ENSLACG00000005425	RIF1	52	56.220	ENSSDUG00000015632	rif1	54	55.827	Seriola_dumerili
ENSLACG00000005425	RIF1	66	56.994	ENSSLDG00000019531	rif1	65	56.396	Seriola_lalandi_dorsalis
ENSLACG00000005425	RIF1	98	50.524	ENSSPUG00000003062	RIF1	99	50.733	Sphenodon_punctatus
ENSLACG00000005425	RIF1	65	58.149	ENSSPAG00000018359	rif1	75	58.149	Stegastes_partitus
ENSLACG00000005425	RIF1	89	63.582	ENSSSCG00000016395	RIF1	84	63.582	Sus_scrofa
ENSLACG00000005425	RIF1	67	47.163	ENSTNIG00000011538	rif1	60	50.925	Tetraodon_nigroviridis
ENSLACG00000005425	RIF1	72	60.494	ENSTBEG00000016082	RIF1	57	60.494	Tupaia_belangeri
ENSLACG00000005425	RIF1	89	64.201	ENSTTRG00000011190	RIF1	64	63.881	Tursiops_truncatus
ENSLACG00000005425	RIF1	78	62.757	ENSUAMG00000026385	RIF1	82	62.757	Ursus_americanus
ENSLACG00000005425	RIF1	89	62.941	ENSUMAG00000000337	RIF1	85	62.941	Ursus_maritimus
ENSLACG00000005425	RIF1	89	63.284	ENSVPAG00000002162	RIF1	85	63.284	Vicugna_pacos
ENSLACG00000005425	RIF1	89	62.647	ENSVVUG00000011293	RIF1	86	62.647	Vulpes_vulpes
ENSLACG00000005425	RIF1	97	63.173	ENSXETG00000004530	rif1	93	63.173	Xenopus_tropicalis
ENSLACG00000005425	RIF1	78	50.036	ENSXMAG00000000506	rif1	57	50.328	Xiphophorus_maculatus