EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000005466 (Gene tree)
Gene ID: 102363480
Gene Symbol: SRSF6
Alias: B52|SFRS6|SRP55
Full Name: serine and arginine rich splicing factor 6
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 28134 bases
Position: chrJH126768.1:169001-197134
Accession: 102363480
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000006161	RRM_1	PF00076.22	4.7e-32	1	2
ENSLACP00000006161	RRM_1	PF00076.22	4.7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000006213	SRSF6-201	6042	XM_005994360	ENSLACP00000006161	338 (aa)	XP_005994422	H3A940

Gene Model

Click here to download ENSLACG00000005466's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG
lcm05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000005466's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000005466	SRSF6	53	63.687	ENSLACG00000017874	-	69	63.889
ENSLACG00000005466	SRSF6	53	66.854	ENSLACG00000005874	SRSF5	98	53.488
ENSLACG00000005466	SRSF6	54	80.769	ENSLACG00000009389	-	61	59.317
ENSLACG00000005466	SRSF6	50	40.805	ENSLACG00000018228	SRSF9	71	41.714
ENSLACG00000005466	SRSF6	50	43.429	ENSLACG00000014160	srsf1a	61	44.571

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000005466	SRSF6	54	91.848	ENSG00000124193	SRSF6	89	82.903	Homo_sapiens
ENSLACG00000005466	SRSF6	54	72.043	ENSAMEG00000003710	SRSF6	90	69.649	Ailuropoda_melanoleuca
ENSLACG00000005466	SRSF6	71	73.770	ENSACIG00000020091	-	95	81.102	Amphilophus_citrinellus
ENSLACG00000005466	SRSF6	95	65.846	ENSACIG00000023658	-	95	66.871	Amphilophus_citrinellus
ENSLACG00000005466	SRSF6	54	85.792	ENSAOCG00000004309	-	97	71.383	Amphiprion_ocellaris
ENSLACG00000005466	SRSF6	54	88.649	ENSAPEG00000013086	-	91	71.787	Amphiprion_percula
ENSLACG00000005466	SRSF6	56	83.333	ENSAPEG00000020746	-	90	65.646	Amphiprion_percula
ENSLACG00000005466	SRSF6	54	84.153	ENSATEG00000007255	-	91	63.462	Anabas_testudineus
ENSLACG00000005466	SRSF6	54	90.710	ENSACAG00000002061	SRSF6	87	83.871	Anolis_carolinensis
ENSLACG00000005466	SRSF6	54	91.848	ENSANAG00000024080	SRSF6	89	82.848	Aotus_nancymaae
ENSLACG00000005466	SRSF6	54	81.720	ENSAMXG00000042692	-	96	85.185	Astyanax_mexicanus
ENSLACG00000005466	SRSF6	54	87.097	ENSAMXG00000003101	-	76	66.026	Astyanax_mexicanus
ENSLACG00000005466	SRSF6	54	91.848	ENSBTAG00000008527	SRSF6	89	82.051	Bos_taurus
ENSLACG00000005466	SRSF6	54	91.848	ENSCJAG00000048403	SRSF6	99	85.240	Callithrix_jacchus
ENSLACG00000005466	SRSF6	54	91.848	ENSCAFG00000009289	SRSF6	90	81.731	Canis_familiaris
ENSLACG00000005466	SRSF6	54	91.848	ENSCAFG00020013559	SRSF6	90	81.731	Canis_lupus_dingo
ENSLACG00000005466	SRSF6	96	73.476	ENSCHIG00000015890	-	96	78.824	Capra_hircus
ENSLACG00000005466	SRSF6	96	72.866	ENSCHIG00000009148	-	96	78.235	Capra_hircus
ENSLACG00000005466	SRSF6	54	67.568	ENSTSYG00000026476	SRSF6	87	66.987	Carlito_syrichta
ENSLACG00000005466	SRSF6	96	64.417	ENSCPOG00000011761	SRSF6	100	68.362	Cavia_porcellus
ENSLACG00000005466	SRSF6	54	91.848	ENSCCAG00000026018	-	89	82.581	Cebus_capucinus
ENSLACG00000005466	SRSF6	64	73.272	ENSCCAG00000018540	-	92	63.487	Cebus_capucinus
ENSLACG00000005466	SRSF6	54	91.848	ENSCATG00000030794	SRSF6	89	83.226	Cercocebus_atys
ENSLACG00000005466	SRSF6	54	91.848	ENSCLAG00000010247	SRSF6	89	82.692	Chinchilla_lanigera
ENSLACG00000005466	SRSF6	54	91.848	ENSCSAG00000014022	SRSF6	89	83.226	Chlorocebus_sabaeus
ENSLACG00000005466	SRSF6	54	91.444	ENSCPBG00000018200	SRSF6	93	82.609	Chrysemys_picta_bellii
ENSLACG00000005466	SRSF6	54	90.761	ENSCANG00000037774	-	89	82.258	Colobus_angolensis_palliatus
ENSLACG00000005466	SRSF6	54	67.568	ENSCANG00000042529	-	87	67.419	Colobus_angolensis_palliatus
ENSLACG00000005466	SRSF6	54	91.848	ENSCGRG00001022339	Srsf6	90	82.258	Cricetulus_griseus_chok1gshd
ENSLACG00000005466	SRSF6	54	82.888	ENSDARG00000016783	srsf6b	98	81.633	Danio_rerio
ENSLACG00000005466	SRSF6	54	79.781	ENSDARG00000013729	srsf6a	90	60.116	Danio_rerio
ENSLACG00000005466	SRSF6	100	77.874	ENSDNOG00000008410	SRSF6	100	81.089	Dasypus_novemcinctus
ENSLACG00000005466	SRSF6	54	91.848	ENSDORG00000028378	Srsf6	89	82.692	Dipodomys_ordii
ENSLACG00000005466	SRSF6	54	86.957	ENSETEG00000006221	SRSF6	93	77.469	Echinops_telfairi
ENSLACG00000005466	SRSF6	54	91.848	ENSEASG00005023429	SRSF6	90	81.731	Equus_asinus_asinus
ENSLACG00000005466	SRSF6	54	91.848	ENSECAG00000023932	SRSF6	89	84.138	Equus_caballus
ENSLACG00000005466	SRSF6	64	72.685	ENSELUG00000013506	SRSF6	96	70.154	Esox_lucius
ENSLACG00000005466	SRSF6	54	91.848	ENSFCAG00000032814	SRSF6	90	81.731	Felis_catus
ENSLACG00000005466	SRSF6	54	67.568	ENSFDAG00000012191	SRSF6	87	67.308	Fukomys_damarensis
ENSLACG00000005466	SRSF6	88	72.368	ENSFHEG00000023065	srsf6a	90	75.082	Fundulus_heteroclitus
ENSLACG00000005466	SRSF6	53	73.743	ENSGMOG00000006105	srsf6a	97	53.398	Gadus_morhua
ENSLACG00000005466	SRSF6	54	82.320	ENSGMOG00000014458	srsf6a	90	63.501	Gadus_morhua
ENSLACG00000005466	SRSF6	54	90.374	ENSGALG00000000990	SRSF6	93	81.040	Gallus_gallus
ENSLACG00000005466	SRSF6	88	61.012	ENSGACG00000006084	srsf6a	100	65.819	Gasterosteus_aculeatus
ENSLACG00000005466	SRSF6	54	91.444	ENSGAGG00000003238	SRSF6	93	82.609	Gopherus_agassizii
ENSLACG00000005466	SRSF6	54	91.848	ENSGGOG00000009808	SRSF6	89	82.903	Gorilla_gorilla
ENSLACG00000005466	SRSF6	66	74.043	ENSHBUG00000006386	-	95	66.129	Haplochromis_burtoni
ENSLACG00000005466	SRSF6	54	91.848	ENSHGLG00000007348	SRSF6	89	82.692	Heterocephalus_glaber_female
ENSLACG00000005466	SRSF6	57	74.093	ENSHGLG00000007701	-	92	67.987	Heterocephalus_glaber_female
ENSLACG00000005466	SRSF6	54	67.568	ENSHGLG00100005043	SRSF6	87	67.308	Heterocephalus_glaber_male
ENSLACG00000005466	SRSF6	88	66.667	ENSHCOG00000002740	srsf6a	90	68.647	Hippocampus_comes
ENSLACG00000005466	SRSF6	61	78.744	ENSIPUG00000004776	-	92	66.667	Ictalurus_punctatus
ENSLACG00000005466	SRSF6	62	71.963	ENSIPUG00000016856	SRSF6	99	64.470	Ictalurus_punctatus
ENSLACG00000005466	SRSF6	54	91.848	ENSSTOG00000010866	SRSF6	89	82.903	Ictidomys_tridecemlineatus
ENSLACG00000005466	SRSF6	62	63.981	ENSJJAG00000020690	Srsf6	100	68.636	Jaculus_jaculus
ENSLACG00000005466	SRSF6	88	66.333	ENSKMAG00000011934	srsf6a	89	68.439	Kryptolebias_marmoratus
ENSLACG00000005466	SRSF6	54	85.326	ENSLBEG00000007356	srsf6a	92	67.560	Labrus_bergylta
ENSLACG00000005466	SRSF6	54	91.848	ENSMFAG00000036925	SRSF6	89	83.226	Macaca_fascicularis
ENSLACG00000005466	SRSF6	54	91.848	ENSMMUG00000006742	SRSF6	89	83.226	Macaca_mulatta
ENSLACG00000005466	SRSF6	54	90.761	ENSMNEG00000027392	-	89	82.581	Macaca_nemestrina
ENSLACG00000005466	SRSF6	54	90.761	ENSMNEG00000038270	-	87	83.667	Macaca_nemestrina
ENSLACG00000005466	SRSF6	54	88.108	ENSMAMG00000017161	srsf6a	91	70.219	Mastacembelus_armatus
ENSLACG00000005466	SRSF6	80	64.312	ENSMZEG00005020658	-	89	63.961	Maylandia_zebra
ENSLACG00000005466	SRSF6	70	80.085	ENSMZEG00005008032	-	95	64.516	Maylandia_zebra
ENSLACG00000005466	SRSF6	54	91.304	ENSMICG00000008537	SRSF6	89	81.350	Microcebus_murinus
ENSLACG00000005466	SRSF6	54	94.054	ENSMODG00000003107	SRSF6	93	83.019	Monodelphis_domestica
ENSLACG00000005466	SRSF6	68	68.103	ENSMALG00000003702	srsf6a	91	57.064	Monopterus_albus
ENSLACG00000005466	SRSF6	100	75.731	MGP_CAROLIEiJ_G0024606	Srsf6	100	78.125	Mus_caroli
ENSLACG00000005466	SRSF6	100	74.269	ENSMUSG00000016921	Srsf6	100	78.409	Mus_musculus
ENSLACG00000005466	SRSF6	100	75.731	MGP_PahariEiJ_G0026050	Srsf6	100	78.125	Mus_pahari
ENSLACG00000005466	SRSF6	100	74.269	MGP_SPRETEiJ_G0025528	Srsf6	100	78.409	Mus_spretus
ENSLACG00000005466	SRSF6	54	91.848	ENSMPUG00000017692	SRSF6	99	84.138	Mustela_putorius_furo
ENSLACG00000005466	SRSF6	54	61.792	ENSMLUG00000016618	SRSF6	89	62.832	Myotis_lucifugus
ENSLACG00000005466	SRSF6	54	91.848	ENSNGAG00000017560	Srsf6	93	81.646	Nannospalax_galili
ENSLACG00000005466	SRSF6	54	84.699	ENSNBRG00000014709	-	94	66.343	Neolamprologus_brichardi
ENSLACG00000005466	SRSF6	54	88.525	ENSNBRG00000001846	-	95	69.364	Neolamprologus_brichardi
ENSLACG00000005466	SRSF6	54	91.848	ENSNLEG00000006524	SRSF6	89	82.903	Nomascus_leucogenys
ENSLACG00000005466	SRSF6	54	94.054	ENSMEUG00000014615	SRSF6	99	83.819	Notamacropus_eugenii
ENSLACG00000005466	SRSF6	54	84.153	ENSONIG00000020247	-	80	63.578	Oreochromis_niloticus
ENSLACG00000005466	SRSF6	54	85.792	ENSONIG00000001925	-	85	77.199	Oreochromis_niloticus
ENSLACG00000005466	SRSF6	54	70.833	ENSOCUG00000009785	-	98	69.799	Oryctolagus_cuniculus
ENSLACG00000005466	SRSF6	53	58.101	ENSOCUG00000023999	-	97	52.536	Oryctolagus_cuniculus
ENSLACG00000005466	SRSF6	54	77.596	ENSORLG00000003530	srsf6a	81	57.068	Oryzias_latipes
ENSLACG00000005466	SRSF6	54	77.049	ENSORLG00015009410	srsf6a	81	57.068	Oryzias_latipes_hsok
ENSLACG00000005466	SRSF6	67	63.556	ENSOMEG00000006001	srsf6a	69	58.117	Oryzias_melastigma
ENSLACG00000005466	SRSF6	54	91.304	ENSOGAG00000014468	SRSF6	89	81.029	Otolemur_garnettii
ENSLACG00000005466	SRSF6	100	69.801	ENSOARG00000003117	SRSF6	100	75.424	Ovis_aries
ENSLACG00000005466	SRSF6	54	77.174	ENSPPAG00000043131	-	99	73.139	Pan_paniscus
ENSLACG00000005466	SRSF6	54	91.304	ENSPPAG00000034327	-	89	82.581	Pan_paniscus
ENSLACG00000005466	SRSF6	54	91.848	ENSPPRG00000008917	SRSF6	90	81.731	Panthera_pardus
ENSLACG00000005466	SRSF6	54	82.162	ENSPTIG00000021305	-	56	61.935	Panthera_tigris_altaica
ENSLACG00000005466	SRSF6	54	77.174	ENSPTRG00000046274	-	99	73.139	Pan_troglodytes
ENSLACG00000005466	SRSF6	54	91.848	ENSPTRG00000044686	-	89	82.903	Pan_troglodytes
ENSLACG00000005466	SRSF6	54	91.848	ENSPANG00000035224	SRSF6	89	83.226	Papio_anubis
ENSLACG00000005466	SRSF6	53	74.595	ENSPKIG00000015703	-	95	65.772	Paramormyrops_kingsleyae
ENSLACG00000005466	SRSF6	89	71.521	ENSPKIG00000018463	-	83	94.048	Paramormyrops_kingsleyae
ENSLACG00000005466	SRSF6	88	74.342	ENSPMGG00000014963	srsf6a	88	72.240	Periophthalmus_magnuspinnatus
ENSLACG00000005466	SRSF6	54	94.054	ENSPCIG00000003820	SRSF6	93	83.386	Phascolarctos_cinereus
ENSLACG00000005466	SRSF6	54	83.060	ENSPCIG00000022430	-	54	61.889	Phascolarctos_cinereus
ENSLACG00000005466	SRSF6	69	86.207	ENSPFOG00000006437	srsf6a	91	67.241	Poecilia_formosa
ENSLACG00000005466	SRSF6	88	65.938	ENSPLAG00000009243	srsf6a	79	84.496	Poecilia_latipinna
ENSLACG00000005466	SRSF6	54	85.326	ENSPMEG00000006042	SRSF6	90	73.567	Poecilia_mexicana
ENSLACG00000005466	SRSF6	54	91.848	ENSPPYG00000011019	SRSF6	89	82.903	Pongo_abelii
ENSLACG00000005466	SRSF6	54	91.304	ENSPCAG00000010954	SRSF6	89	82.943	Procavia_capensis
ENSLACG00000005466	SRSF6	54	91.304	ENSPCOG00000026364	SRSF6	88	81.994	Propithecus_coquereli
ENSLACG00000005466	SRSF6	54	92.391	ENSPVAG00000015232	SRSF6	89	82.581	Pteropus_vampyrus
ENSLACG00000005466	SRSF6	54	84.699	ENSPNYG00000004944	-	95	66.129	Pundamilia_nyererei
ENSLACG00000005466	SRSF6	54	88.525	ENSPNYG00000011272	-	87	69.375	Pundamilia_nyererei
ENSLACG00000005466	SRSF6	52	57.339	ENSPNAG00000023145	-	89	57.534	Pygocentrus_nattereri
ENSLACG00000005466	SRSF6	100	74.269	ENSRNOG00000006380	Srsf6	100	78.409	Rattus_norvegicus
ENSLACG00000005466	SRSF6	54	86.957	ENSRBIG00000041414	SRSF6	89	81.290	Rhinopithecus_bieti
ENSLACG00000005466	SRSF6	54	91.848	ENSRROG00000029989	SRSF6	89	82.581	Rhinopithecus_roxellana
ENSLACG00000005466	SRSF6	62	66.667	ENSSBOG00000034078	-	54	74.033	Saimiri_boliviensis_boliviensis
ENSLACG00000005466	SRSF6	54	91.848	ENSSBOG00000033708	-	89	82.581	Saimiri_boliviensis_boliviensis
ENSLACG00000005466	SRSF6	54	94.054	ENSSHAG00000012805	SRSF6	93	83.072	Sarcophilus_harrisii
ENSLACG00000005466	SRSF6	91	65.797	ENSSFOG00015019681	-	93	65.527	Scleropages_formosus
ENSLACG00000005466	SRSF6	71	71.901	ENSSFOG00015015169	SRSF6	93	73.548	Scleropages_formosus
ENSLACG00000005466	SRSF6	54	80.220	ENSSMAG00000017447	-	98	63.385	Scophthalmus_maximus
ENSLACG00000005466	SRSF6	61	73.113	ENSSMAG00000014819	-	83	70.233	Scophthalmus_maximus
ENSLACG00000005466	SRSF6	54	88.108	ENSSDUG00000016097	srsf6a	91	72.100	Seriola_dumerili
ENSLACG00000005466	SRSF6	54	91.803	ENSSPUG00000004967	SRSF6	93	81.677	Sphenodon_punctatus
ENSLACG00000005466	SRSF6	78	69.288	ENSSPAG00000002362	srsf6a	91	68.060	Stegastes_partitus
ENSLACG00000005466	SRSF6	96	73.476	ENSSSCG00000007362	SRSF6	96	83.505	Sus_scrofa
ENSLACG00000005466	SRSF6	54	94.022	ENSTGUG00000003455	SRSF6	93	82.407	Taeniopygia_guttata
ENSLACG00000005466	SRSF6	88	72.185	ENSTNIG00000001692	srsf6a	91	72.787	Tetraodon_nigroviridis
ENSLACG00000005466	SRSF6	54	91.848	ENSUAMG00000003559	SRSF6	90	81.731	Ursus_americanus
ENSLACG00000005466	SRSF6	54	86.339	ENSXMAG00000021849	srsf6a	90	72.403	Xiphophorus_maculatus