EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000005694 (Gene tree)
Gene ID: 102357835
Gene Symbol: ALYREF
Alias: ALY|ALY/REF|BEF|REF|THOC4
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 14335 bases
Position: chrJH126596.1:180319-194653
Accession: 102357835
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000006417	RRM_1	PF00076.22	1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000006470	ALYREF-201	2798	XM_005989042	ENSLACP00000006417	258 (aa)	XP_005989104	H3A9U6

Gene Model

Click here to download ENSLACG00000005694's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03013	RNA transport	KEGG
lcm03015	mRNA surveillance pathway	KEGG
lcm03040	Spliceosome	KEGG
lcm05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000005694's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000005694	ALYREF	100	71.212	ENSG00000183684	ALYREF	97	70.455	Homo_sapiens
ENSLACG00000005694	ALYREF	100	68.382	ENSAPOG00000018455	ALYREF	100	71.324	Acanthochromis_polyacanthus
ENSLACG00000005694	ALYREF	74	79.688	ENSAMEG00000017463	ALYREF	74	78.307	Ailuropoda_melanoleuca
ENSLACG00000005694	ALYREF	100	68.061	ENSACAG00000010526	ALYREF	100	65.779	Anolis_carolinensis
ENSLACG00000005694	ALYREF	100	65.152	ENSANAG00000028229	-	78	62.879	Aotus_nancymaae
ENSLACG00000005694	ALYREF	71	79.121	ENSANAG00000022638	-	81	73.469	Aotus_nancymaae
ENSLACG00000005694	ALYREF	100	71.591	ENSBTAG00000008498	ALYREF	100	70.833	Bos_taurus
ENSLACG00000005694	ALYREF	100	70.833	ENSCJAG00000039942	ALYREF	97	70.455	Callithrix_jacchus
ENSLACG00000005694	ALYREF	100	72.348	ENSCAFG00000005877	ALYREF	100	71.212	Canis_familiaris
ENSLACG00000005694	ALYREF	100	72.348	ENSCAFG00020009815	ALYREF	100	71.212	Canis_lupus_dingo
ENSLACG00000005694	ALYREF	100	70.566	ENSCHIG00000017396	ALYREF	97	70.189	Capra_hircus
ENSLACG00000005694	ALYREF	70	81.667	ENSTSYG00000002272	ALYREF	78	72.414	Carlito_syrichta
ENSLACG00000005694	ALYREF	52	79.259	ENSCAPG00000014727	-	100	77.778	Cavia_aperea
ENSLACG00000005694	ALYREF	100	71.970	ENSCPOG00000013710	ALYREF	100	70.833	Cavia_porcellus
ENSLACG00000005694	ALYREF	100	65.637	ENSCCAG00000030237	-	100	62.934	Cebus_capucinus
ENSLACG00000005694	ALYREF	100	72.727	ENSCCAG00000020578	-	97	70.833	Cebus_capucinus
ENSLACG00000005694	ALYREF	100	71.970	ENSCATG00000033169	ALYREF	97	70.833	Cercocebus_atys
ENSLACG00000005694	ALYREF	100	68.966	ENSCLAG00000015026	ALYREF	100	67.442	Chinchilla_lanigera
ENSLACG00000005694	ALYREF	100	71.970	ENSCSAG00000002216	ALYREF	97	70.833	Chlorocebus_sabaeus
ENSLACG00000005694	ALYREF	81	70.698	ENSCANG00000034056	ALYREF	95	73.958	Colobus_angolensis_palliatus
ENSLACG00000005694	ALYREF	100	73.004	ENSCGRG00001018191	-	100	71.103	Cricetulus_griseus_chok1gshd
ENSLACG00000005694	ALYREF	74	77.604	ENSCGRG00000015871	-	100	69.458	Cricetulus_griseus_crigri
ENSLACG00000005694	ALYREF	72	60.417	ENSCSEG00000015438	-	98	59.375	Cynoglossus_semilaevis
ENSLACG00000005694	ALYREF	71	80.874	ENSDNOG00000002563	ALYREF	79	75.521	Dasypus_novemcinctus
ENSLACG00000005694	ALYREF	90	70.690	ENSDORG00000025849	-	73	77.838	Dipodomys_ordii
ENSLACG00000005694	ALYREF	71	80.435	ENSETEG00000016596	ALYREF	100	76.503	Echinops_telfairi
ENSLACG00000005694	ALYREF	100	71.212	ENSEASG00005005824	ALYREF	95	70.455	Equus_asinus_asinus
ENSLACG00000005694	ALYREF	100	71.212	ENSECAG00000018754	ALYREF	95	70.455	Equus_caballus
ENSLACG00000005694	ALYREF	67	73.596	ENSEEUG00000010164	ALYREF	100	73.034	Erinaceus_europaeus
ENSLACG00000005694	ALYREF	100	71.591	ENSFCAG00000022549	ALYREF	98	70.833	Felis_catus
ENSLACG00000005694	ALYREF	81	74.528	ENSFDAG00000001213	ALYREF	90	73.399	Fukomys_damarensis
ENSLACG00000005694	ALYREF	100	76.923	ENSGALG00000007237	ALYREF	100	73.462	Gallus_gallus
ENSLACG00000005694	ALYREF	100	72.453	ENSGACG00000013328	ALYREF	100	71.483	Gasterosteus_aculeatus
ENSLACG00000005694	ALYREF	100	75.573	ENSGAGG00000008536	ALYREF	100	74.046	Gopherus_agassizii
ENSLACG00000005694	ALYREF	100	71.212	ENSGGOG00000013935	ALYREF	99	70.189	Gorilla_gorilla
ENSLACG00000005694	ALYREF	100	72.624	ENSHGLG00000008293	ALYREF	100	71.103	Heterocephalus_glaber_female
ENSLACG00000005694	ALYREF	81	66.379	ENSHGLG00100006949	ALYREF	85	71.220	Heterocephalus_glaber_male
ENSLACG00000005694	ALYREF	100	70.677	ENSHCOG00000015046	ALYREF	100	72.556	Hippocampus_comes
ENSLACG00000005694	ALYREF	100	70.909	ENSJJAG00000004134	-	100	70.076	Jaculus_jaculus
ENSLACG00000005694	ALYREF	75	80.829	ENSLAFG00000003083	ALYREF	100	79.275	Loxodonta_africana
ENSLACG00000005694	ALYREF	100	72.093	ENSMFAG00000001394	ALYREF	97	69.767	Macaca_fascicularis
ENSLACG00000005694	ALYREF	100	71.970	ENSMMUG00000012884	ALYREF	97	70.833	Macaca_mulatta
ENSLACG00000005694	ALYREF	100	71.970	ENSMNEG00000043666	ALYREF	97	70.833	Macaca_nemestrina
ENSLACG00000005694	ALYREF	74	74.872	ENSMLEG00000043353	ALYREF	87	73.846	Mandrillus_leucophaeus
ENSLACG00000005694	ALYREF	100	69.767	ENSMAUG00000020552	-	100	66.667	Mesocricetus_auratus
ENSLACG00000005694	ALYREF	100	71.591	ENSMICG00000017403	ALYREF	97	71.212	Microcebus_murinus
ENSLACG00000005694	ALYREF	100	67.829	ENSMOCG00000016792	-	100	67.424	Microtus_ochrogaster
ENSLACG00000005694	ALYREF	99	73.004	ENSMODG00000003030	ALYREF	84	71.103	Monodelphis_domestica
ENSLACG00000005694	ALYREF	100	69.145	ENSMALG00000019408	ALYREF	100	69.888	Monopterus_albus
ENSLACG00000005694	ALYREF	100	73.384	MGP_CAROLIEiJ_G0017529	Alyref	100	71.863	Mus_caroli
ENSLACG00000005694	ALYREF	100	67.954	MGP_CAROLIEiJ_G0014874	Alyref2	100	64.093	Mus_caroli
ENSLACG00000005694	ALYREF	91	59.494	ENSMUSG00000094314	Gm4301	58	61.458	Mus_musculus
ENSLACG00000005694	ALYREF	91	58.898	ENSMUSG00000112856	Gm4305	58	61.979	Mus_musculus
ENSLACG00000005694	ALYREF	100	55.401	ENSMUSG00000097427	Gm6763	98	56.886	Mus_musculus
ENSLACG00000005694	ALYREF	100	56.343	ENSMUSG00000117091	AC153137.1	100	52.830	Mus_musculus
ENSLACG00000005694	ALYREF	91	58.898	ENSMUSG00000096744	Gm4307	58	61.979	Mus_musculus
ENSLACG00000005694	ALYREF	100	55.401	ENSMUSG00000095022	Gm20765	100	48.421	Mus_musculus
ENSLACG00000005694	ALYREF	100	55.401	ENSMUSG00000094144	Gm21312	100	48.421	Mus_musculus
ENSLACG00000005694	ALYREF	91	58.898	ENSMUSG00000112931	Gm4303	58	61.979	Mus_musculus
ENSLACG00000005694	ALYREF	100	55.401	ENSMUSG00000091779	Gm21293	100	48.421	Mus_musculus
ENSLACG00000005694	ALYREF	100	54.639	ENSMUSG00000090854	Gm4340	100	47.751	Mus_musculus
ENSLACG00000005694	ALYREF	91	59.494	ENSMUSG00000096640	Gm4312	58	61.458	Mus_musculus
ENSLACG00000005694	ALYREF	100	67.692	ENSMUSG00000060244	Alyref2	100	64.479	Mus_musculus
ENSLACG00000005694	ALYREF	100	55.401	ENSMUSG00000097878	Gm8764	98	56.886	Mus_musculus
ENSLACG00000005694	ALYREF	100	56.343	ENSMUSG00000086727	4931428L18Rik	100	52.453	Mus_musculus
ENSLACG00000005694	ALYREF	100	73.384	ENSMUSG00000025134	Alyref	100	71.863	Mus_musculus
ENSLACG00000005694	ALYREF	91	59.072	ENSMUSG00000091101	Gm4302	57	61.979	Mus_musculus
ENSLACG00000005694	ALYREF	100	55.401	ENSMUSG00000097550	Gm21304	100	48.421	Mus_musculus
ENSLACG00000005694	ALYREF	73	77.320	MGP_PahariEiJ_G0018656	-	99	76.289	Mus_pahari
ENSLACG00000005694	ALYREF	100	73.384	MGP_PahariEiJ_G0018655	-	100	71.863	Mus_pahari
ENSLACG00000005694	ALYREF	82	60.185	MGP_PahariEiJ_G0027255	-	76	61.026	Mus_pahari
ENSLACG00000005694	ALYREF	82	60.185	MGP_PahariEiJ_G0027254	-	78	60.513	Mus_pahari
ENSLACG00000005694	ALYREF	71	53.448	MGP_SPRETEiJ_G0016590	-	51	74.790	Mus_spretus
ENSLACG00000005694	ALYREF	100	73.384	MGP_SPRETEiJ_G0018373	Alyref	100	71.863	Mus_spretus
ENSLACG00000005694	ALYREF	100	67.308	MGP_SPRETEiJ_G0015679	Alyref2	100	64.479	Mus_spretus
ENSLACG00000005694	ALYREF	76	57.868	ENSMLUG00000028343	-	91	55.102	Myotis_lucifugus
ENSLACG00000005694	ALYREF	98	57.708	ENSMLUG00000027352	-	77	53.755	Myotis_lucifugus
ENSLACG00000005694	ALYREF	98	53.846	ENSMLUG00000024447	-	65	59.391	Myotis_lucifugus
ENSLACG00000005694	ALYREF	98	57.529	ENSMLUG00000026271	-	66	61.224	Myotis_lucifugus
ENSLACG00000005694	ALYREF	98	57.708	ENSMLUG00000024976	-	79	54.724	Myotis_lucifugus
ENSLACG00000005694	ALYREF	98	56.863	ENSMLUG00000030407	-	77	54.902	Myotis_lucifugus
ENSLACG00000005694	ALYREF	98	53.906	ENSMLUG00000022869	-	69	58.209	Myotis_lucifugus
ENSLACG00000005694	ALYREF	98	60.311	ENSMLUG00000002626	-	98	59.375	Myotis_lucifugus
ENSLACG00000005694	ALYREF	98	52.692	ENSMLUG00000024471	-	70	55.610	Myotis_lucifugus
ENSLACG00000005694	ALYREF	100	49.265	ENSMLUG00000023213	-	67	55.000	Myotis_lucifugus
ENSLACG00000005694	ALYREF	98	51.923	ENSMLUG00000015043	-	84	53.202	Myotis_lucifugus
ENSLACG00000005694	ALYREF	98	59.766	ENSMLUG00000025677	-	77	55.294	Myotis_lucifugus
ENSLACG00000005694	ALYREF	98	63.636	ENSMLUG00000027516	-	78	60.474	Myotis_lucifugus
ENSLACG00000005694	ALYREF	75	77.320	ENSMLUG00000009555	-	68	74.611	Myotis_lucifugus
ENSLACG00000005694	ALYREF	100	71.212	ENSNLEG00000010313	ALYREF	97	70.833	Nomascus_leucogenys
ENSLACG00000005694	ALYREF	52	80.000	ENSMEUG00000002210	ALYREF	89	57.416	Notamacropus_eugenii
ENSLACG00000005694	ALYREF	52	79.259	ENSOPRG00000005551	-	52	77.778	Ochotona_princeps
ENSLACG00000005694	ALYREF	100	71.161	ENSODEG00000008359	ALYREF	100	70.412	Octodon_degus
ENSLACG00000005694	ALYREF	100	70.956	ENSORLG00000012331	ALYREF	100	72.761	Oryzias_latipes
ENSLACG00000005694	ALYREF	88	71.053	ENSOGAG00000012409	ALYREF	76	77.717	Otolemur_garnettii
ENSLACG00000005694	ALYREF	71	81.421	ENSOARG00000017932	ALYREF	69	76.562	Ovis_aries
ENSLACG00000005694	ALYREF	100	71.591	ENSPPRG00000010829	ALYREF	98	70.833	Panthera_pardus
ENSLACG00000005694	ALYREF	50	88.281	ENSPTIG00000006399	ALYREF	65	90.833	Panthera_tigris_altaica
ENSLACG00000005694	ALYREF	100	71.212	ENSPTRG00000009774	ALYREF	97	70.833	Pan_troglodytes
ENSLACG00000005694	ALYREF	100	71.970	ENSPANG00000019265	ALYREF	97	70.833	Papio_anubis
ENSLACG00000005694	ALYREF	52	78.947	ENSPSIG00000017541	ALYREF	98	78.947	Pelodiscus_sinensis
ENSLACG00000005694	ALYREF	100	71.212	ENSPPYG00000008749	ALYREF	97	70.833	Pongo_abelii
ENSLACG00000005694	ALYREF	100	71.591	ENSPCOG00000020874	ALYREF	97	71.212	Propithecus_coquereli
ENSLACG00000005694	ALYREF	100	64.151	ENSPVAG00000017866	ALYREF	69	77.596	Pteropus_vampyrus
ENSLACG00000005694	ALYREF	67	73.743	ENSRNOG00000036687	Alyref	91	74.157	Rattus_norvegicus
ENSLACG00000005694	ALYREF	72	78.495	ENSRBIG00000039651	ALYREF	74	75.806	Rhinopithecus_bieti
ENSLACG00000005694	ALYREF	92	69.262	ENSRROG00000045364	ALYREF	80	74.762	Rhinopithecus_roxellana
ENSLACG00000005694	ALYREF	74	78.947	ENSSHAG00000010459	ALYREF	96	76.842	Sarcophilus_harrisii
ENSLACG00000005694	ALYREF	100	53.623	ENSSDUG00000003992	-	100	53.986	Seriola_dumerili
ENSLACG00000005694	ALYREF	100	54.212	ENSSLDG00000005386	-	100	54.182	Seriola_lalandi_dorsalis
ENSLACG00000005694	ALYREF	100	75.285	ENSSPUG00000004600	ALYREF	100	71.863	Sphenodon_punctatus
ENSLACG00000005694	ALYREF	100	68.864	ENSSPAG00000011178	ALYREF	97	69.231	Stegastes_partitus
ENSLACG00000005694	ALYREF	100	73.384	ENSSSCG00000032655	ALYREF	100	71.103	Sus_scrofa
ENSLACG00000005694	ALYREF	52	78.947	ENSTGUG00000003513	ALYREF	100	73.529	Taeniopygia_guttata
ENSLACG00000005694	ALYREF	100	72.593	ENSTRUG00000008828	ALYREF	100	73.208	Takifugu_rubripes
ENSLACG00000005694	ALYREF	71	80.874	ENSTBEG00000005834	ALYREF	100	78.689	Tupaia_belangeri
ENSLACG00000005694	ALYREF	100	70.455	ENSTTRG00000012275	ALYREF	100	69.697	Tursiops_truncatus
ENSLACG00000005694	ALYREF	71	70.330	ENSUAMG00000016931	ALYREF	66	68.132	Ursus_americanus
ENSLACG00000005694	ALYREF	71	70.330	ENSUMAG00000016384	ALYREF	65	66.484	Ursus_maritimus
ENSLACG00000005694	ALYREF	100	72.932	ENSXETG00000005391	alyref	100	69.434	Xenopus_tropicalis