EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000005758 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 4773 bases
Position: chrJH128608.1:183302-188074
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000006496	RVT_1	PF00078.27	4.3e-15	1	1
ENSLACP00000006495	RVT_1	PF00078.27	1.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000006549	-	822	-	ENSLACP00000006496	274 (aa)	-	H3AA25
ENSLACT00000006548	-	1446	-	ENSLACP00000006495	482 (aa)	-	H3AA24
ENSLACT00000006550	-	1011	-	ENSLACP00000006497	337 (aa)	-	H3AA26

Gene Model

Click here to download ENSLACG00000005758's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000005758's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000005758	-	93	77.734	ENSLACG00000004832	-	88	49.605
ENSLACG00000005758	-	86	64.440	ENSLACG00000001539	-	92	64.440
ENSLACG00000005758	-	95	42.300	ENSLACG00000004233	-	75	43.326
ENSLACG00000005758	-	91	52.823	ENSLACG00000013546	-	95	64.228
ENSLACG00000005758	-	84	64.655	ENSLACG00000006083	-	76	70.435
ENSLACG00000005758	-	91	62.000	ENSLACG00000012911	-	74	43.863
ENSLACG00000005758	-	91	52.400	ENSLACG00000013644	-	58	39.700
ENSLACG00000005758	-	91	58.065	ENSLACG00000011106	-	92	72.689
ENSLACG00000005758	-	94	67.671	ENSLACG00000006107	-	79	67.671
ENSLACG00000005758	-	91	58.800	ENSLACG00000008392	-	93	70.732
ENSLACG00000005758	-	94	64.356	ENSLACG00000016962	-	93	67.411
ENSLACG00000005758	-	94	69.895	ENSLACG00000013633	-	94	69.895
ENSLACG00000005758	-	90	42.683	ENSLACG00000001271	-	74	31.351
ENSLACG00000005758	-	89	60.246	ENSLACG00000012377	-	53	54.314
ENSLACG00000005758	-	86	62.447	ENSLACG00000010696	-	82	73.200

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000005758	-	90	44.130	ENSACLG00000017721	-	63	34.455	Astatotilapia_calliptera
ENSLACG00000005758	-	90	44.130	ENSACLG00000025178	-	52	34.800	Astatotilapia_calliptera
ENSLACG00000005758	-	90	44.130	ENSACLG00000021830	-	57	34.195	Astatotilapia_calliptera
ENSLACG00000005758	-	90	43.725	ENSACLG00000004963	-	64	34.257	Astatotilapia_calliptera
ENSLACG00000005758	-	90	44.130	ENSACLG00000013574	-	51	34.911	Astatotilapia_calliptera
ENSLACG00000005758	-	90	44.130	ENSACLG00000005419	-	63	34.257	Astatotilapia_calliptera
ENSLACG00000005758	-	90	44.534	ENSACLG00000021406	-	56	35.200	Astatotilapia_calliptera
ENSLACG00000005758	-	90	44.130	ENSACLG00000009148	-	52	35.259	Astatotilapia_calliptera
ENSLACG00000005758	-	90	44.130	ENSACLG00000018006	-	52	34.455	Astatotilapia_calliptera
ENSLACG00000005758	-	90	44.130	ENSACLG00000006057	-	64	34.653	Astatotilapia_calliptera
ENSLACG00000005758	-	90	43.725	ENSACLG00000013139	-	56	33.861	Astatotilapia_calliptera
ENSLACG00000005758	-	89	44.082	ENSORLG00000023528	-	61	36.217	Oryzias_latipes
ENSLACG00000005758	-	89	44.898	ENSORLG00000027125	-	55	36.747	Oryzias_latipes
ENSLACG00000005758	-	89	44.082	ENSORLG00000022216	-	59	36.327	Oryzias_latipes
ENSLACG00000005758	-	89	44.082	ENSORLG00000025660	-	58	36.273	Oryzias_latipes
ENSLACG00000005758	-	89	44.898	ENSORLG00000023099	-	52	36.673	Oryzias_latipes
ENSLACG00000005758	-	89	44.490	ENSORLG00000028072	-	56	36.473	Oryzias_latipes
ENSLACG00000005758	-	89	44.490	ENSORLG00020020703	-	56	36.874	Oryzias_latipes_hni
ENSLACG00000005758	-	89	44.898	ENSORLG00020020895	-	56	36.473	Oryzias_latipes_hni
ENSLACG00000005758	-	89	44.898	ENSORLG00020006197	-	58	36.473	Oryzias_latipes_hni
ENSLACG00000005758	-	89	43.673	ENSXMAG00000021428	-	58	35.600	Xiphophorus_maculatus