EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000006232 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 1419 bases
Position: chrJH128776.1:207546-208964
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000007021	RVT_1	PF00078.27	3.4e-33	1	1
ENSLACP00000007020	RVT_1	PF00078.27	1.1e-32	1	1
ENSLACP00000007022	RVT_1	PF00078.27	1.3e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000007079	-	1134	-	ENSLACP00000007020	378 (aa)	-	H3ABJ9
ENSLACT00000007081	-	639	-	ENSLACP00000007022	213 (aa)	-	H3ABK1
ENSLACT00000007080	-	1026	-	ENSLACP00000007021	342 (aa)	-	H3ABK0

Gene Model

Click here to download ENSLACG00000006232's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000006232's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000006232	-	94	31.068	ENSLACG00000011039	-	58	33.452
ENSLACG00000006232	-	100	32.869	ENSLACG00000007383	-	51	31.701
ENSLACG00000006232	-	79	30.000	ENSLACG00000012050	-	88	30.222
ENSLACG00000006232	-	85	84.946	ENSLACG00000007658	-	69	77.305
ENSLACG00000006232	-	73	30.268	ENSLACG00000009128	-	75	30.268
ENSLACG00000006232	-	75	31.737	ENSLACG00000010217	-	83	31.737
ENSLACG00000006232	-	98	32.642	ENSLACG00000014709	-	95	32.208
ENSLACG00000006232	-	99	78.475	ENSLACG00000017359	-	99	78.475
ENSLACG00000006232	-	51	32.240	ENSLACG00000007362	-	88	31.220
ENSLACG00000006232	-	64	30.357	ENSLACG00000002615	-	85	30.357
ENSLACG00000006232	-	50	34.906	ENSLACG00000015520	-	69	34.906
ENSLACG00000006232	-	90	30.542	ENSLACG00000011144	-	70	30.542

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000006232	-	91	33.663	ENSACIG00000002701	-	81	33.663	Amphilophus_citrinellus
ENSLACG00000006232	-	91	32.673	ENSACIG00000017535	-	80	32.673	Amphilophus_citrinellus
ENSLACG00000006232	-	91	34.158	ENSACIG00000002047	-	79	34.158	Amphilophus_citrinellus
ENSLACG00000006232	-	91	31.416	ENSAMXG00000037183	-	83	31.416	Astyanax_mexicanus
ENSLACG00000006232	-	83	35.450	ENSHCOG00000010320	-	76	35.450	Hippocampus_comes
ENSLACG00000006232	-	95	32.407	ENSIPUG00000010429	-	83	32.407	Ictalurus_punctatus
ENSLACG00000006232	-	88	33.333	ENSIPUG00000002371	-	75	33.333	Ictalurus_punctatus
ENSLACG00000006232	-	90	32.500	ENSIPUG00000000759	-	91	32.500	Ictalurus_punctatus
ENSLACG00000006232	-	93	32.524	ENSMZEG00005010519	-	81	32.524	Maylandia_zebra
ENSLACG00000006232	-	79	30.460	ENSORLG00000028489	-	68	30.460	Oryzias_latipes
ENSLACG00000006232	-	57	33.065	ENSORLG00015017583	-	62	33.065	Oryzias_latipes_hsok