EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000006280 (Gene tree)
Gene ID: 102355780
Gene Symbol: si:ch211-11k18.4
Alias: -
Full Name: uncharacterized LOC102355780
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 41758 bases
Position: chrJH127832.1:209576-251333
Accession: 102355780
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000007078	MMR_HSR1	PF01926.23	2.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000007137	-	2196	XM_006005919	ENSLACP00000007078	451 (aa)	XP_006005981	H3ABQ7

Gene Model

Click here to download ENSLACG00000006280's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000006280's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000006280	si:ch211-11k18.4	98	62.980	ENSLACG00000004899	-	99	62.838
ENSLACG00000006280	si:ch211-11k18.4	99	63.535	ENSLACG00000017433	si:dkey-98f17.5	98	63.535

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000006280	si:ch211-11k18.4	98	62.472	ENSAPOG00000010378	si:dkey-98f17.5	99	62.022	Acanthochromis_polyacanthus
ENSLACG00000006280	si:ch211-11k18.4	99	70.444	ENSAPOG00000018833	si:ch211-11k18.4	99	70.444	Acanthochromis_polyacanthus
ENSLACG00000006280	si:ch211-11k18.4	98	62.022	ENSACIG00000017719	si:dkey-98f17.5	99	61.798	Amphilophus_citrinellus
ENSLACG00000006280	si:ch211-11k18.4	99	69.401	ENSACIG00000006696	si:ch211-11k18.4	99	67.849	Amphilophus_citrinellus
ENSLACG00000006280	si:ch211-11k18.4	100	70.732	ENSAOCG00000014284	si:ch211-11k18.4	99	70.732	Amphiprion_ocellaris
ENSLACG00000006280	si:ch211-11k18.4	98	62.921	ENSAOCG00000008661	si:dkey-98f17.5	99	62.472	Amphiprion_ocellaris
ENSLACG00000006280	si:ch211-11k18.4	100	70.510	ENSAPEG00000014910	si:ch211-11k18.4	99	70.510	Amphiprion_percula
ENSLACG00000006280	si:ch211-11k18.4	98	62.697	ENSAPEG00000022447	si:dkey-98f17.5	99	62.247	Amphiprion_percula
ENSLACG00000006280	si:ch211-11k18.4	98	61.798	ENSATEG00000007188	si:dkey-98f17.5	99	61.348	Anabas_testudineus
ENSLACG00000006280	si:ch211-11k18.4	100	71.840	ENSATEG00000004775	si:ch211-11k18.4	99	71.840	Anabas_testudineus
ENSLACG00000006280	si:ch211-11k18.4	99	64.574	ENSACAG00000028632	-	99	64.430	Anolis_carolinensis
ENSLACG00000006280	si:ch211-11k18.4	98	62.472	ENSACLG00000001308	si:dkey-98f17.5	99	62.247	Astatotilapia_calliptera
ENSLACG00000006280	si:ch211-11k18.4	99	70.667	ENSACLG00000007907	si:ch211-11k18.4	99	70.667	Astatotilapia_calliptera
ENSLACG00000006280	si:ch211-11k18.4	100	70.288	ENSAMXG00000017817	si:ch211-11k18.4	100	70.288	Astyanax_mexicanus
ENSLACG00000006280	si:ch211-11k18.4	98	61.261	ENSAMXG00000001190	si:dkey-98f17.5	99	61.124	Astyanax_mexicanus
ENSLACG00000006280	si:ch211-11k18.4	83	62.933	ENSCING00000020807	-	98	62.933	Ciona_intestinalis
ENSLACG00000006280	si:ch211-11k18.4	99	61.211	ENSCSAVG00000009987	-	99	61.211	Ciona_savignyi
ENSLACG00000006280	si:ch211-11k18.4	99	62.306	ENSCSEG00000017512	si:dkey-98f17.5	98	61.085	Cynoglossus_semilaevis
ENSLACG00000006280	si:ch211-11k18.4	100	70.732	ENSCSEG00000017661	si:ch211-11k18.4	99	70.732	Cynoglossus_semilaevis
ENSLACG00000006280	si:ch211-11k18.4	100	72.062	ENSCVAG00000015346	si:ch211-11k18.4	99	72.062	Cyprinodon_variegatus
ENSLACG00000006280	si:ch211-11k18.4	98	61.798	ENSCVAG00000011351	si:dkey-98f17.5	99	62.022	Cyprinodon_variegatus
ENSLACG00000006280	si:ch211-11k18.4	100	73.230	ENSDARG00000087869	si:ch211-11k18.4	100	80.711	Danio_rerio
ENSLACG00000006280	si:ch211-11k18.4	96	62.243	ENSDARG00000068863	si:dkey-98f17.5	99	62.014	Danio_rerio
ENSLACG00000006280	si:ch211-11k18.4	78	59.429	ENSEBUG00000007620	si:dkey-98f17.5	93	59.429	Eptatretus_burgeri
ENSLACG00000006280	si:ch211-11k18.4	98	62.332	ENSELUG00000003365	si:dkey-98f17.5	99	62.108	Esox_lucius
ENSLACG00000006280	si:ch211-11k18.4	100	71.840	ENSFHEG00000019820	si:ch211-11k18.4	99	71.840	Fundulus_heteroclitus
ENSLACG00000006280	si:ch211-11k18.4	98	62.697	ENSFHEG00000012744	si:dkey-98f17.5	99	62.472	Fundulus_heteroclitus
ENSLACG00000006280	si:ch211-11k18.4	90	65.025	ENSGMOG00000003492	si:ch211-11k18.4	94	65.183	Gadus_morhua
ENSLACG00000006280	si:ch211-11k18.4	100	70.510	ENSGAFG00000005677	si:ch211-11k18.4	99	70.510	Gambusia_affinis
ENSLACG00000006280	si:ch211-11k18.4	98	62.022	ENSGAFG00000012362	si:dkey-98f17.5	89	61.798	Gambusia_affinis
ENSLACG00000006280	si:ch211-11k18.4	90	71.921	ENSGACG00000013134	si:ch211-11k18.4	94	72.775	Gasterosteus_aculeatus
ENSLACG00000006280	si:ch211-11k18.4	57	75.294	ENSGACG00000009399	si:dkey-98f17.5	98	75.294	Gasterosteus_aculeatus
ENSLACG00000006280	si:ch211-11k18.4	99	70.667	ENSHBUG00000020638	si:ch211-11k18.4	99	70.667	Haplochromis_burtoni
ENSLACG00000006280	si:ch211-11k18.4	98	62.697	ENSHBUG00000008331	si:dkey-98f17.5	99	62.472	Haplochromis_burtoni
ENSLACG00000006280	si:ch211-11k18.4	98	60.135	ENSHCOG00000016505	si:dkey-98f17.5	83	67.292	Hippocampus_comes
ENSLACG00000006280	si:ch211-11k18.4	100	70.067	ENSHCOG00000014773	si:ch211-11k18.4	100	70.067	Hippocampus_comes
ENSLACG00000006280	si:ch211-11k18.4	99	59.284	ENSIPUG00000019981	si:dkey-98f17.5	99	58.427	Ictalurus_punctatus
ENSLACG00000006280	si:ch211-11k18.4	89	60.149	ENSIPUG00000016694	si:ch211-11k18.4	83	61.170	Ictalurus_punctatus
ENSLACG00000006280	si:ch211-11k18.4	96	67.436	ENSIPUG00000016678	si:ch211-11k18.4	99	67.206	Ictalurus_punctatus
ENSLACG00000006280	si:ch211-11k18.4	100	70.510	ENSKMAG00000009327	si:ch211-11k18.4	99	70.510	Kryptolebias_marmoratus
ENSLACG00000006280	si:ch211-11k18.4	98	61.798	ENSKMAG00000014997	si:dkey-98f17.5	99	61.798	Kryptolebias_marmoratus
ENSLACG00000006280	si:ch211-11k18.4	98	62.247	ENSLBEG00000012756	si:dkey-98f17.5	99	62.022	Labrus_bergylta
ENSLACG00000006280	si:ch211-11k18.4	98	61.607	ENSLOCG00000003824	si:dkey-98f17.5	99	61.161	Lepisosteus_oculatus
ENSLACG00000006280	si:ch211-11k18.4	96	71.132	ENSMAMG00000002536	si:ch211-11k18.4	99	71.132	Mastacembelus_armatus
ENSLACG00000006280	si:ch211-11k18.4	98	60.987	ENSMAMG00000014528	si:dkey-98f17.5	99	60.762	Mastacembelus_armatus
ENSLACG00000006280	si:ch211-11k18.4	99	70.444	ENSMZEG00005008941	si:ch211-11k18.4	99	70.444	Maylandia_zebra
ENSLACG00000006280	si:ch211-11k18.4	98	62.697	ENSMZEG00005016572	si:dkey-98f17.5	99	62.472	Maylandia_zebra
ENSLACG00000006280	si:ch211-11k18.4	99	66.887	ENSMMOG00000012485	si:ch211-11k18.4	99	67.111	Mola_mola
ENSLACG00000006280	si:ch211-11k18.4	96	62.069	ENSMALG00000012761	si:dkey-98f17.5	99	61.468	Monopterus_albus
ENSLACG00000006280	si:ch211-11k18.4	100	71.619	ENSMALG00000019735	si:ch211-11k18.4	99	71.619	Monopterus_albus
ENSLACG00000006280	si:ch211-11k18.4	98	62.613	ENSNBRG00000006068	si:dkey-98f17.5	99	62.387	Neolamprologus_brichardi
ENSLACG00000006280	si:ch211-11k18.4	96	70.208	ENSNBRG00000002220	si:ch211-11k18.4	98	70.208	Neolamprologus_brichardi
ENSLACG00000006280	si:ch211-11k18.4	99	70.000	ENSONIG00000019412	si:ch211-11k18.4	99	70.000	Oreochromis_niloticus
ENSLACG00000006280	si:ch211-11k18.4	98	62.921	ENSONIG00000013568	si:dkey-98f17.5	99	62.697	Oreochromis_niloticus
ENSLACG00000006280	si:ch211-11k18.4	100	71.175	ENSORLG00000012015	si:ch211-11k18.4	99	71.175	Oryzias_latipes
ENSLACG00000006280	si:ch211-11k18.4	98	59.326	ENSORLG00000007958	si:dkey-98f17.5	99	59.326	Oryzias_latipes
ENSLACG00000006280	si:ch211-11k18.4	98	61.798	ENSORLG00020013350	si:dkey-98f17.5	99	61.798	Oryzias_latipes_hni
ENSLACG00000006280	si:ch211-11k18.4	100	70.953	ENSORLG00020012386	si:ch211-11k18.4	99	70.953	Oryzias_latipes_hni
ENSLACG00000006280	si:ch211-11k18.4	100	71.397	ENSORLG00015022862	si:ch211-11k18.4	99	71.397	Oryzias_latipes_hsok
ENSLACG00000006280	si:ch211-11k18.4	98	61.573	ENSORLG00015002000	si:dkey-98f17.5	99	61.573	Oryzias_latipes_hsok
ENSLACG00000006280	si:ch211-11k18.4	100	71.175	ENSOMEG00000018686	si:ch211-11k18.4	99	71.175	Oryzias_melastigma
ENSLACG00000006280	si:ch211-11k18.4	98	61.798	ENSOMEG00000003154	si:dkey-98f17.5	99	61.949	Oryzias_melastigma
ENSLACG00000006280	si:ch211-11k18.4	100	71.619	ENSPKIG00000018807	si:ch211-11k18.4	100	71.619	Paramormyrops_kingsleyae
ENSLACG00000006280	si:ch211-11k18.4	100	67.627	ENSPKIG00000023918	-	98	67.627	Paramormyrops_kingsleyae
ENSLACG00000006280	si:ch211-11k18.4	98	62.022	ENSPKIG00000024621	si:dkey-98f17.5	99	61.124	Paramormyrops_kingsleyae
ENSLACG00000006280	si:ch211-11k18.4	100	70.510	ENSPMGG00000016507	si:ch211-11k18.4	99	70.510	Periophthalmus_magnuspinnatus
ENSLACG00000006280	si:ch211-11k18.4	98	60.899	ENSPMGG00000019065	si:dkey-98f17.5	99	60.674	Periophthalmus_magnuspinnatus
ENSLACG00000006280	si:ch211-11k18.4	100	71.840	ENSPFOG00000007976	si:ch211-11k18.4	99	71.840	Poecilia_formosa
ENSLACG00000006280	si:ch211-11k18.4	98	61.693	ENSPFOG00000015142	si:dkey-98f17.5	99	61.470	Poecilia_formosa
ENSLACG00000006280	si:ch211-11k18.4	100	71.840	ENSPLAG00000019794	si:ch211-11k18.4	99	71.840	Poecilia_latipinna
ENSLACG00000006280	si:ch211-11k18.4	98	61.573	ENSPLAG00000003709	si:dkey-98f17.5	99	61.348	Poecilia_latipinna
ENSLACG00000006280	si:ch211-11k18.4	98	62.247	ENSPMEG00000018709	si:dkey-98f17.5	93	62.022	Poecilia_mexicana
ENSLACG00000006280	si:ch211-11k18.4	100	71.840	ENSPMEG00000024198	si:ch211-11k18.4	99	71.840	Poecilia_mexicana
ENSLACG00000006280	si:ch211-11k18.4	96	62.759	ENSPREG00000000708	si:dkey-98f17.5	99	62.529	Poecilia_reticulata
ENSLACG00000006280	si:ch211-11k18.4	94	67.981	ENSPREG00000015319	si:ch211-11k18.4	87	72.135	Poecilia_reticulata
ENSLACG00000006280	si:ch211-11k18.4	99	70.667	ENSPNYG00000017099	si:ch211-11k18.4	99	70.667	Pundamilia_nyererei
ENSLACG00000006280	si:ch211-11k18.4	98	62.697	ENSPNYG00000017266	si:dkey-98f17.5	99	62.472	Pundamilia_nyererei
ENSLACG00000006280	si:ch211-11k18.4	99	71.333	ENSPNAG00000022138	si:ch211-11k18.4	99	71.333	Pygocentrus_nattereri
ENSLACG00000006280	si:ch211-11k18.4	98	61.486	ENSPNAG00000021352	si:dkey-98f17.5	99	61.573	Pygocentrus_nattereri
ENSLACG00000006280	si:ch211-11k18.4	99	71.111	ENSSFOG00015000985	si:ch211-11k18.4	94	71.111	Scleropages_formosus
ENSLACG00000006280	si:ch211-11k18.4	98	60.449	ENSSFOG00015017965	si:dkey-98f17.5	99	59.775	Scleropages_formosus
ENSLACG00000006280	si:ch211-11k18.4	99	62.528	ENSSMAG00000011905	si:dkey-98f17.5	100	62.306	Scophthalmus_maximus
ENSLACG00000006280	si:ch211-11k18.4	100	69.845	ENSSMAG00000009651	si:ch211-11k18.4	99	69.845	Scophthalmus_maximus
ENSLACG00000006280	si:ch211-11k18.4	98	61.573	ENSSDUG00000013457	si:dkey-98f17.5	99	61.348	Seriola_dumerili
ENSLACG00000006280	si:ch211-11k18.4	100	71.397	ENSSDUG00000016411	si:ch211-11k18.4	99	71.397	Seriola_dumerili
ENSLACG00000006280	si:ch211-11k18.4	100	71.175	ENSSLDG00000019145	si:ch211-11k18.4	99	71.175	Seriola_lalandi_dorsalis
ENSLACG00000006280	si:ch211-11k18.4	98	61.348	ENSSLDG00000025395	si:dkey-98f17.5	99	61.124	Seriola_lalandi_dorsalis
ENSLACG00000006280	si:ch211-11k18.4	87	66.497	ENSSPUG00000010096	-	99	66.497	Sphenodon_punctatus
ENSLACG00000006280	si:ch211-11k18.4	98	62.247	ENSSPAG00000018800	si:dkey-98f17.5	99	62.247	Stegastes_partitus
ENSLACG00000006280	si:ch211-11k18.4	100	70.953	ENSSPAG00000010697	si:ch211-11k18.4	99	70.953	Stegastes_partitus
ENSLACG00000006280	si:ch211-11k18.4	98	61.798	ENSTRUG00000021287	si:dkey-98f17.5	99	61.798	Takifugu_rubripes
ENSLACG00000006280	si:ch211-11k18.4	100	70.510	ENSTRUG00000020291	si:ch211-11k18.4	99	70.510	Takifugu_rubripes
ENSLACG00000006280	si:ch211-11k18.4	99	68.212	ENSXETG00000031783	-	99	68.212	Xenopus_tropicalis
ENSLACG00000006280	si:ch211-11k18.4	98	61.937	ENSXCOG00000017002	si:dkey-98f17.5	99	61.712	Xiphophorus_couchianus
ENSLACG00000006280	si:ch211-11k18.4	100	69.011	ENSXCOG00000018094	si:ch211-11k18.4	99	68.071	Xiphophorus_couchianus
ENSLACG00000006280	si:ch211-11k18.4	100	71.397	ENSXMAG00000021235	si:ch211-11k18.4	99	71.397	Xiphophorus_maculatus
ENSLACG00000006280	si:ch211-11k18.4	98	61.798	ENSXMAG00000007688	si:dkey-98f17.5	94	62.022	Xiphophorus_maculatus