EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000006343 (Gene tree)
Gene ID: 102361456
Gene Symbol: zgc:77262
Alias: -
Full Name: RNA-binding protein lark-like
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 861 bases
Position: chrJH127632.1:213432-214292
Accession: 102361456
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000007148	RRM_5	PF13893.6	2.6e-10	1	2
ENSLACP00000007148	RRM_5	PF13893.6	2.6e-10	2	2
ENSLACP00000007148	RRM_1	PF00076.22	1.9e-34	1	2
ENSLACP00000007148	RRM_1	PF00076.22	1.9e-34	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000007207	-	861	XM_006004590	ENSLACP00000007148	286 (aa)	XP_006004652	H3ABX7

Gene Model

Click here to download ENSLACG00000006343's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000006343's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000006343	zgc:77262	52	31.646	ENSLACG00000014160	srsf1a	69	31.707
ENSLACG00000006343	zgc:77262	51	34.247	ENSLACG00000004052	SRSF7	59	30.380

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000006343	zgc:77262	52	53.237	ENSAPOG00000012375	-	97	52.482	Acanthochromis_polyacanthus
ENSLACG00000006343	zgc:77262	52	54.676	ENSACIG00000016472	-	86	54.676	Amphilophus_citrinellus
ENSLACG00000006343	zgc:77262	52	53.237	ENSAOCG00000010907	-	97	53.237	Amphiprion_ocellaris
ENSLACG00000006343	zgc:77262	52	52.055	ENSAPEG00000009476	-	90	52.055	Amphiprion_percula
ENSLACG00000006343	zgc:77262	52	54.478	ENSATEG00000001912	-	89	54.478	Anabas_testudineus
ENSLACG00000006343	zgc:77262	52	46.043	ENSAMXG00000032121	rbm4.2	87	46.043	Astyanax_mexicanus
ENSLACG00000006343	zgc:77262	55	72.785	ENSCPBG00000023666	-	93	75.676	Chrysemys_picta_bellii
ENSLACG00000006343	zgc:77262	51	47.482	ENSCSEG00000007739	-	99	47.482	Cynoglossus_semilaevis
ENSLACG00000006343	zgc:77262	99	50.151	ENSDARG00000044545	zgc:77262	100	52.537	Danio_rerio
ENSLACG00000006343	zgc:77262	52	50.725	ENSDARG00000036386	rbm4.1	79	50.725	Danio_rerio
ENSLACG00000006343	zgc:77262	67	50.993	ENSEBUG00000007174	-	88	50.993	Eptatretus_burgeri
ENSLACG00000006343	zgc:77262	52	53.237	ENSFHEG00000003483	-	91	53.237	Fundulus_heteroclitus
ENSLACG00000006343	zgc:77262	52	54.676	ENSGAFG00000019301	-	91	54.676	Gambusia_affinis
ENSLACG00000006343	zgc:77262	55	72.152	ENSGAGG00000014558	-	93	75.000	Gopherus_agassizii
ENSLACG00000006343	zgc:77262	52	53.571	ENSHBUG00000011624	-	91	53.571	Haplochromis_burtoni
ENSLACG00000006343	zgc:77262	58	47.024	ENSHCOG00000011413	-	81	52.174	Hippocampus_comes
ENSLACG00000006343	zgc:77262	99	50.000	ENSIPUG00000021035	zgc:77262	99	50.459	Ictalurus_punctatus
ENSLACG00000006343	zgc:77262	52	53.378	ENSLBEG00000019756	-	83	54.348	Labrus_bergylta
ENSLACG00000006343	zgc:77262	51	50.694	ENSLOCG00000002772	rbm4.1	97	50.694	Lepisosteus_oculatus
ENSLACG00000006343	zgc:77262	58	46.707	ENSMZEG00005009210	-	78	50.714	Maylandia_zebra
ENSLACG00000006343	zgc:77262	52	55.224	ENSMZEG00005028160	-	91	55.224	Maylandia_zebra
ENSLACG00000006343	zgc:77262	51	40.288	ENSMZEG00005028161	-	77	40.288	Maylandia_zebra
ENSLACG00000006343	zgc:77262	52	54.478	ENSMMOG00000020484	-	91	54.478	Mola_mola
ENSLACG00000006343	zgc:77262	52	53.571	ENSNBRG00000017763	-	90	53.571	Neolamprologus_brichardi
ENSLACG00000006343	zgc:77262	52	52.027	ENSPKIG00000020805	rbm4.1	87	51.773	Paramormyrops_kingsleyae
ENSLACG00000006343	zgc:77262	51	51.079	ENSPMGG00000004331	rbm4.1	99	48.366	Periophthalmus_magnuspinnatus
ENSLACG00000006343	zgc:77262	53	45.223	ENSPMAG00000003433	rbm4.2	74	45.223	Petromyzon_marinus
ENSLACG00000006343	zgc:77262	56	55.970	ENSPLAG00000018569	-	96	55.970	Poecilia_latipinna
ENSLACG00000006343	zgc:77262	56	55.970	ENSPMEG00000006278	-	96	55.970	Poecilia_mexicana
ENSLACG00000006343	zgc:77262	52	53.571	ENSPNYG00000004649	-	90	53.571	Pundamilia_nyererei
ENSLACG00000006343	zgc:77262	50	71.642	ENSSFOG00015018567	zgc:77262	89	71.642	Scleropages_formosus
ENSLACG00000006343	zgc:77262	52	53.957	ENSSMAG00000007575	-	90	53.957	Scophthalmus_maximus
ENSLACG00000006343	zgc:77262	51	53.957	ENSXCOG00000003730	-	86	53.957	Xiphophorus_couchianus