EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000006645 (Gene tree)
Gene ID: 102346438
Gene Symbol: UPF3A
Alias: HUPF3A|RENT3A|UPF3
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 26590 bases
Position: chrJH129423.1:228476-255065
Accession: 102346438
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000007494	Smg4_UPF3	PF03467.15	2.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000007557	UPF3A-201	1057	-	ENSLACP00000007494	332 (aa)	-	H3ACX3
ENSLACT00000007559	UPF3A-203	844	XM_006011697	ENSLACP00000007496	261 (aa)	-	H3ACX5
ENSLACT00000007558	UPF3A-202	1048	-	ENSLACP00000007495	329 (aa)	-	H3ACX4

Gene Model

Click here to download ENSLACG00000006645's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03013	RNA transport	KEGG
lcm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000006645's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000006645	UPF3A	75	67.308	ENSG00000125351	UPF3B	66	37.647	Homo_sapiens
ENSLACG00000006645	UPF3A	93	33.711	ENSAPOG00000012775	upf3b	67	34.884	Acanthochromis_polyacanthus
ENSLACG00000006645	UPF3A	66	87.500	ENSAPOG00000013484	upf3a	60	43.402	Acanthochromis_polyacanthus
ENSLACG00000006645	UPF3A	100	43.935	ENSAMEG00000004259	UPF3A	68	48.368	Ailuropoda_melanoleuca
ENSLACG00000006645	UPF3A	75	69.231	ENSAMEG00000000163	UPF3B	66	39.003	Ailuropoda_melanoleuca
ENSLACG00000006645	UPF3A	74	87.500	ENSACIG00000020468	upf3a	68	39.898	Amphilophus_citrinellus
ENSLACG00000006645	UPF3A	66	87.500	ENSAOCG00000020784	upf3a	60	43.402	Amphiprion_ocellaris
ENSLACG00000006645	UPF3A	58	32.719	ENSAOCG00000000706	upf3b	67	35.569	Amphiprion_ocellaris
ENSLACG00000006645	UPF3A	66	87.500	ENSAPEG00000003519	upf3a	60	43.402	Amphiprion_percula
ENSLACG00000006645	UPF3A	66	87.500	ENSATEG00000005843	upf3a	60	43.988	Anabas_testudineus
ENSLACG00000006645	UPF3A	99	51.515	ENSACAG00000001540	UPF3A	75	52.342	Anolis_carolinensis
ENSLACG00000006645	UPF3A	72	74.510	ENSACAG00000003625	UPF3B	65	39.458	Anolis_carolinensis
ENSLACG00000006645	UPF3A	69	77.358	ENSANAG00000021713	UPF3A	64	45.847	Aotus_nancymaae
ENSLACG00000006645	UPF3A	75	67.308	ENSANAG00000021894	-	66	37.941	Aotus_nancymaae
ENSLACG00000006645	UPF3A	94	37.500	ENSANAG00000025598	-	65	38.095	Aotus_nancymaae
ENSLACG00000006645	UPF3A	66	87.500	ENSACLG00000026274	upf3a	61	40.947	Astatotilapia_calliptera
ENSLACG00000006645	UPF3A	74	89.286	ENSAMXG00000002608	upf3a	66	46.467	Astyanax_mexicanus
ENSLACG00000006645	UPF3A	90	40.719	ENSCJAG00000019102	UPF3A	63	45.667	Callithrix_jacchus
ENSLACG00000006645	UPF3A	75	67.308	ENSCJAG00000004975	UPF3B	66	37.647	Callithrix_jacchus
ENSLACG00000006645	UPF3A	90	41.791	ENSCAFG00000006504	UPF3A	61	46.667	Canis_familiaris
ENSLACG00000006645	UPF3A	67	69.231	ENSCAFG00000018426	UPF3B	66	39.053	Canis_familiaris
ENSLACG00000006645	UPF3A	94	41.714	ENSCAFG00020014268	UPF3A	63	46.349	Canis_lupus_dingo
ENSLACG00000006645	UPF3A	71	69.231	ENSCAFG00020004074	UPF3B	67	36.795	Canis_lupus_dingo
ENSLACG00000006645	UPF3A	97	37.725	ENSCHIG00000000247	-	66	38.235	Capra_hircus
ENSLACG00000006645	UPF3A	89	42.517	ENSCHIG00000008682	UPF3A	55	43.537	Capra_hircus
ENSLACG00000006645	UPF3A	73	52.294	ENSTSYG00000001918	UPF3A	84	40.717	Carlito_syrichta
ENSLACG00000006645	UPF3A	75	69.231	ENSTSYG00000014690	UPF3B	65	38.776	Carlito_syrichta
ENSLACG00000006645	UPF3A	70	44.444	ENSCPOG00000006824	UPF3A	50	44.444	Cavia_porcellus
ENSLACG00000006645	UPF3A	90	41.791	ENSCCAG00000018406	UPF3A	64	47.508	Cebus_capucinus
ENSLACG00000006645	UPF3A	75	67.308	ENSCATG00000017506	UPF3B	66	37.647	Cercocebus_atys
ENSLACG00000006645	UPF3A	70	84.211	ENSCSAG00000017388	UPF3A	58	42.388	Chlorocebus_sabaeus
ENSLACG00000006645	UPF3A	67	69.231	ENSCGRG00001006858	-	61	37.942	Cricetulus_griseus_chok1gshd
ENSLACG00000006645	UPF3A	67	69.231	ENSCGRG00000007627	Upf3b	68	37.539	Cricetulus_griseus_crigri
ENSLACG00000006645	UPF3A	66	87.500	ENSCSEG00000005106	upf3a	61	43.149	Cynoglossus_semilaevis
ENSLACG00000006645	UPF3A	65	85.185	ENSCVAG00000022333	upf3a	60	43.402	Cyprinodon_variegatus
ENSLACG00000006645	UPF3A	74	87.500	ENSDARG00000069297	upf3a	67	45.902	Danio_rerio
ENSLACG00000006645	UPF3A	82	48.693	ENSDNOG00000034391	UPF3A	58	49.020	Dasypus_novemcinctus
ENSLACG00000006645	UPF3A	70	67.308	ENSDORG00000006077	Upf3b	62	37.224	Dipodomys_ordii
ENSLACG00000006645	UPF3A	100	40.921	ENSEASG00005021884	UPF3A	64	45.994	Equus_asinus_asinus
ENSLACG00000006645	UPF3A	76	67.925	ENSEASG00005012919	UPF3B	65	39.296	Equus_asinus_asinus
ENSLACG00000006645	UPF3A	76	67.925	ENSECAG00000016947	UPF3B	65	39.296	Equus_caballus
ENSLACG00000006645	UPF3A	100	40.921	ENSECAG00000017141	UPF3A	64	45.970	Equus_caballus
ENSLACG00000006645	UPF3A	74	87.500	ENSELUG00000011050	upf3a	67	41.711	Esox_lucius
ENSLACG00000006645	UPF3A	73	69.231	ENSFCAG00000004388	UPF3B	66	38.095	Felis_catus
ENSLACG00000006645	UPF3A	100	42.935	ENSFCAG00000014602	UPF3A	68	47.904	Felis_catus
ENSLACG00000006645	UPF3A	97	37.647	ENSFALG00000001569	UPF3B	66	38.824	Ficedula_albicollis
ENSLACG00000006645	UPF3A	75	67.308	ENSFDAG00000018869	UPF3B	65	36.257	Fukomys_damarensis
ENSLACG00000006645	UPF3A	73	36.691	ENSGMOG00000019615	upf3a	68	37.410	Gadus_morhua
ENSLACG00000006645	UPF3A	66	85.714	ENSGAFG00000021170	upf3a	60	42.522	Gambusia_affinis
ENSLACG00000006645	UPF3A	73	36.559	ENSGACG00000001972	upf3a	67	38.214	Gasterosteus_aculeatus
ENSLACG00000006645	UPF3A	67	72.549	ENSGAGG00000001219	UPF3B	62	41.158	Gopherus_agassizii
ENSLACG00000006645	UPF3A	75	67.308	ENSGGOG00000023995	UPF3B	66	37.647	Gorilla_gorilla
ENSLACG00000006645	UPF3A	70	84.211	ENSGGOG00000043074	-	65	45.364	Gorilla_gorilla
ENSLACG00000006645	UPF3A	70	84.211	ENSGGOG00000041219	-	69	45.364	Gorilla_gorilla
ENSLACG00000006645	UPF3A	66	87.500	ENSHBUG00000011325	upf3a	60	43.109	Haplochromis_burtoni
ENSLACG00000006645	UPF3A	71	36.397	ENSHGLG00000001544	UPF3A	50	42.616	Heterocephalus_glaber_female
ENSLACG00000006645	UPF3A	75	67.308	ENSHGLG00000019582	-	65	36.257	Heterocephalus_glaber_female
ENSLACG00000006645	UPF3A	71	36.397	ENSHGLG00100013244	UPF3A	50	42.616	Heterocephalus_glaber_male
ENSLACG00000006645	UPF3A	75	67.308	ENSHGLG00100002042	-	64	36.310	Heterocephalus_glaber_male
ENSLACG00000006645	UPF3A	67	65.385	ENSHCOG00000017004	upf3b	63	34.906	Hippocampus_comes
ENSLACG00000006645	UPF3A	66	86.792	ENSHCOG00000013985	upf3a	60	43.323	Hippocampus_comes
ENSLACG00000006645	UPF3A	74	89.286	ENSIPUG00000023450	upf3a	66	45.504	Ictalurus_punctatus
ENSLACG00000006645	UPF3A	73	67.308	ENSSTOG00000001101	UPF3B	65	38.529	Ictidomys_tridecemlineatus
ENSLACG00000006645	UPF3A	67	87.500	ENSKMAG00000004381	upf3a	60	42.815	Kryptolebias_marmoratus
ENSLACG00000006645	UPF3A	66	85.965	ENSLBEG00000021570	upf3a	60	44.242	Labrus_bergylta
ENSLACG00000006645	UPF3A	78	89.474	ENSLOCG00000002665	upf3a	67	48.361	Lepisosteus_oculatus
ENSLACG00000006645	UPF3A	95	49.112	ENSLAFG00000023358	UPF3A	73	49.112	Loxodonta_africana
ENSLACG00000006645	UPF3A	75	67.308	ENSLAFG00000001267	UPF3B	65	36.994	Loxodonta_africana
ENSLACG00000006645	UPF3A	75	67.308	ENSMFAG00000045414	UPF3B	66	37.647	Macaca_fascicularis
ENSLACG00000006645	UPF3A	75	67.308	ENSMMUG00000020222	UPF3B	66	37.647	Macaca_mulatta
ENSLACG00000006645	UPF3A	75	67.308	ENSMNEG00000039794	UPF3B	66	37.647	Macaca_nemestrina
ENSLACG00000006645	UPF3A	75	67.308	ENSMLEG00000010999	UPF3B	66	37.647	Mandrillus_leucophaeus
ENSLACG00000006645	UPF3A	66	87.719	ENSMAMG00000018364	upf3a	61	40.896	Mastacembelus_armatus
ENSLACG00000006645	UPF3A	66	87.500	ENSMZEG00005021571	upf3a	61	40.947	Maylandia_zebra
ENSLACG00000006645	UPF3A	100	54.496	ENSMGAG00000014837	UPF3A	78	54.768	Meleagris_gallopavo
ENSLACG00000006645	UPF3A	67	67.308	ENSMAUG00000008705	Upf3b	61	36.482	Mesocricetus_auratus
ENSLACG00000006645	UPF3A	66	83.929	ENSMMOG00000019751	upf3a	61	41.061	Mola_mola
ENSLACG00000006645	UPF3A	100	56.948	ENSMODG00000003159	UPF3A	74	56.948	Monodelphis_domestica
ENSLACG00000006645	UPF3A	73	73.077	ENSMODG00000010232	UPF3B	72	39.458	Monodelphis_domestica
ENSLACG00000006645	UPF3A	83	36.422	MGP_CAROLIEiJ_G0030848	Upf3a	58	41.007	Mus_caroli
ENSLACG00000006645	UPF3A	67	69.231	MGP_CAROLIEiJ_G0032999	Upf3b	81	34.259	Mus_caroli
ENSLACG00000006645	UPF3A	83	37.380	ENSMUSG00000038398	Upf3a	59	41.727	Mus_musculus
ENSLACG00000006645	UPF3A	67	69.231	ENSMUSG00000036572	Upf3b	80	33.333	Mus_musculus
ENSLACG00000006645	UPF3A	67	69.231	MGP_PahariEiJ_G0031543	Upf3b	81	35.185	Mus_pahari
ENSLACG00000006645	UPF3A	83	38.339	MGP_PahariEiJ_G0021311	Upf3a	59	42.446	Mus_pahari
ENSLACG00000006645	UPF3A	83	37.380	MGP_SPRETEiJ_G0031958	Upf3a	59	41.727	Mus_spretus
ENSLACG00000006645	UPF3A	67	69.231	MGP_SPRETEiJ_G0034152	Upf3b	81	33.333	Mus_spretus
ENSLACG00000006645	UPF3A	73	69.231	ENSMPUG00000001531	UPF3B	61	40.000	Mustela_putorius_furo
ENSLACG00000006645	UPF3A	100	44.744	ENSMPUG00000009139	UPF3A	64	49.258	Mustela_putorius_furo
ENSLACG00000006645	UPF3A	73	69.231	ENSMLUG00000010821	UPF3B	65	39.296	Myotis_lucifugus
ENSLACG00000006645	UPF3A	100	45.799	ENSMLUG00000015905	UPF3A	74	50.746	Myotis_lucifugus
ENSLACG00000006645	UPF3A	83	37.700	ENSNGAG00000019314	Upf3a	59	42.806	Nannospalax_galili
ENSLACG00000006645	UPF3A	66	87.500	ENSNBRG00000000828	upf3a	60	43.109	Neolamprologus_brichardi
ENSLACG00000006645	UPF3A	75	67.308	ENSNLEG00000014897	UPF3B	66	37.647	Nomascus_leucogenys
ENSLACG00000006645	UPF3A	61	74.510	ENSMEUG00000015615	UPF3B	73	35.192	Notamacropus_eugenii
ENSLACG00000006645	UPF3A	75	65.385	ENSODEG00000002186	-	64	34.211	Octodon_degus
ENSLACG00000006645	UPF3A	66	89.286	ENSONIG00000006817	upf3a	60	42.815	Oreochromis_niloticus
ENSLACG00000006645	UPF3A	83	51.282	ENSOANG00000006985	-	75	51.282	Ornithorhynchus_anatinus
ENSLACG00000006645	UPF3A	97	38.150	ENSOANG00000002594	-	74	38.439	Ornithorhynchus_anatinus
ENSLACG00000006645	UPF3A	100	36.950	ENSOCUG00000008450	UPF3A	62	37.313	Oryctolagus_cuniculus
ENSLACG00000006645	UPF3A	92	41.449	ENSORLG00000010911	upf3a	60	41.449	Oryzias_latipes
ENSLACG00000006645	UPF3A	67	82.456	ENSORLG00020014317	upf3a	60	44.892	Oryzias_latipes_hni
ENSLACG00000006645	UPF3A	66	87.719	ENSOMEG00000014425	upf3a	60	42.229	Oryzias_melastigma
ENSLACG00000006645	UPF3A	72	40.364	ENSOGAG00000004788	UPF3A	54	45.833	Otolemur_garnettii
ENSLACG00000006645	UPF3A	67	59.615	ENSOGAG00000033003	-	62	36.656	Otolemur_garnettii
ENSLACG00000006645	UPF3A	94	39.769	ENSOARG00000009004	UPF3A	61	44.089	Ovis_aries
ENSLACG00000006645	UPF3A	89	34.797	ENSOARG00000007869	-	64	34.628	Ovis_aries
ENSLACG00000006645	UPF3A	91	42.136	ENSPPAG00000042267	UPF3A	60	46.026	Pan_paniscus
ENSLACG00000006645	UPF3A	75	67.308	ENSPPAG00000040390	UPF3B	66	37.647	Pan_paniscus
ENSLACG00000006645	UPF3A	73	69.231	ENSPPRG00000023536	UPF3B	66	38.806	Panthera_pardus
ENSLACG00000006645	UPF3A	100	42.391	ENSPPRG00000025062	UPF3A	68	47.305	Panthera_pardus
ENSLACG00000006645	UPF3A	94	35.988	ENSPTIG00000015264	UPF3B	67	37.283	Panthera_tigris_altaica
ENSLACG00000006645	UPF3A	91	42.136	ENSPTRG00000006073	UPF3A	64	46.026	Pan_troglodytes
ENSLACG00000006645	UPF3A	91	42.593	ENSPTRG00000041835	-	68	46.026	Pan_troglodytes
ENSLACG00000006645	UPF3A	75	67.308	ENSPTRG00000022228	UPF3B	66	37.647	Pan_troglodytes
ENSLACG00000006645	UPF3A	91	45.395	ENSPTRG00000041187	-	69	45.695	Pan_troglodytes
ENSLACG00000006645	UPF3A	91	39.394	ENSPTRG00000051640	-	68	42.715	Pan_troglodytes
ENSLACG00000006645	UPF3A	75	67.308	ENSPANG00000000900	UPF3B	66	37.647	Papio_anubis
ENSLACG00000006645	UPF3A	74	89.474	ENSPKIG00000004422	upf3a	74	40.404	Paramormyrops_kingsleyae
ENSLACG00000006645	UPF3A	100	55.858	ENSPSIG00000007468	UPF3A	74	55.858	Pelodiscus_sinensis
ENSLACG00000006645	UPF3A	74	89.286	ENSPMGG00000012696	upf3a	67	38.265	Periophthalmus_magnuspinnatus
ENSLACG00000006645	UPF3A	67	69.231	ENSPEMG00000012352	Upf3b	62	37.500	Peromyscus_maniculatus_bairdii
ENSLACG00000006645	UPF3A	63	73.684	ENSPCIG00000028914	UPF3B	60	38.562	Phascolarctos_cinereus
ENSLACG00000006645	UPF3A	66	72.308	ENSPCIG00000019590	-	51	72.308	Phascolarctos_cinereus
ENSLACG00000006645	UPF3A	66	87.500	ENSPFOG00000013222	upf3a	60	44.575	Poecilia_formosa
ENSLACG00000006645	UPF3A	66	83.929	ENSPLAG00000011960	upf3a	61	43.567	Poecilia_latipinna
ENSLACG00000006645	UPF3A	66	87.500	ENSPMEG00000000836	upf3a	61	41.944	Poecilia_mexicana
ENSLACG00000006645	UPF3A	75	67.308	ENSPCOG00000021960	UPF3B	66	37.941	Propithecus_coquereli
ENSLACG00000006645	UPF3A	100	40.761	ENSPVAG00000005656	UPF3A	64	44.611	Pteropus_vampyrus
ENSLACG00000006645	UPF3A	66	87.500	ENSPNYG00000011289	upf3a	61	40.947	Pundamilia_nyererei
ENSLACG00000006645	UPF3A	74	89.286	ENSPNAG00000019532	upf3a	66	46.467	Pygocentrus_nattereri
ENSLACG00000006645	UPF3A	73	38.489	ENSRNOG00000017397	Upf3a	53	44.033	Rattus_norvegicus
ENSLACG00000006645	UPF3A	67	69.231	ENSRNOG00000039994	Upf3b	61	36.977	Rattus_norvegicus
ENSLACG00000006645	UPF3A	75	67.308	ENSRROG00000041031	UPF3B	66	37.647	Rhinopithecus_roxellana
ENSLACG00000006645	UPF3A	90	41.194	ENSSBOG00000029989	UPF3A	70	46.844	Saimiri_boliviensis_boliviensis
ENSLACG00000006645	UPF3A	75	67.308	ENSSBOG00000019740	UPF3B	66	38.529	Saimiri_boliviensis_boliviensis
ENSLACG00000006645	UPF3A	95	56.695	ENSSHAG00000009895	UPF3A	73	56.056	Sarcophilus_harrisii
ENSLACG00000006645	UPF3A	67	74.510	ENSSHAG00000008634	UPF3B	61	40.705	Sarcophilus_harrisii
ENSLACG00000006645	UPF3A	79	51.493	ENSSFOG00015021851	upf3a	64	51.493	Scleropages_formosus
ENSLACG00000006645	UPF3A	64	87.500	ENSSMAG00000003858	upf3a	60	41.436	Scophthalmus_maximus
ENSLACG00000006645	UPF3A	66	87.500	ENSSDUG00000009680	upf3a	57	46.405	Seriola_dumerili
ENSLACG00000006645	UPF3A	66	87.500	ENSSLDG00000009700	upf3a	60	43.402	Seriola_lalandi_dorsalis
ENSLACG00000006645	UPF3A	78	82.143	ENSSARG00000007262	UPF3A	73	46.951	Sorex_araneus
ENSLACG00000006645	UPF3A	71	71.053	ENSSPUG00000013082	UPF3B	65	36.795	Sphenodon_punctatus
ENSLACG00000006645	UPF3A	65	86.792	ENSSPAG00000007938	upf3a	59	43.917	Stegastes_partitus
ENSLACG00000006645	UPF3A	75	69.231	ENSSSCG00000012617	UPF3B	65	37.135	Sus_scrofa
ENSLACG00000006645	UPF3A	88	55.963	ENSTGUG00000009493	UPF3A	70	56.269	Taeniopygia_guttata
ENSLACG00000006645	UPF3A	75	72.549	ENSTGUG00000003413	UPF3B	73	39.466	Taeniopygia_guttata
ENSLACG00000006645	UPF3A	68	81.818	ENSTRUG00000012730	upf3a	61	41.349	Takifugu_rubripes
ENSLACG00000006645	UPF3A	66	82.143	ENSTNIG00000014973	upf3a	68	43.492	Tetraodon_nigroviridis
ENSLACG00000006645	UPF3A	63	37.500	ENSTBEG00000017186	-	60	39.423	Tupaia_belangeri
ENSLACG00000006645	UPF3A	100	40.599	ENSTTRG00000015414	UPF3A	63	44.277	Tursiops_truncatus
ENSLACG00000006645	UPF3A	71	69.231	ENSUAMG00000024565	UPF3B	65	37.830	Ursus_americanus
ENSLACG00000006645	UPF3A	71	69.231	ENSUMAG00000002150	UPF3B	66	35.799	Ursus_maritimus
ENSLACG00000006645	UPF3A	99	41.144	ENSVPAG00000003525	UPF3A	73	45.783	Vicugna_pacos
ENSLACG00000006645	UPF3A	71	69.231	ENSVVUG00000011594	UPF3B	65	36.982	Vulpes_vulpes
ENSLACG00000006645	UPF3A	100	40.970	ENSVVUG00000013538	UPF3A	62	45.536	Vulpes_vulpes
ENSLACG00000006645	UPF3A	89	35.669	ENSXETG00000007440	upf3b	64	35.669	Xenopus_tropicalis
ENSLACG00000006645	UPF3A	88	53.425	ENSXETG00000002572	upf3a	64	53.425	Xenopus_tropicalis
ENSLACG00000006645	UPF3A	50	81.579	ENSXCOG00000018591	upf3a	58	35.650	Xiphophorus_couchianus
ENSLACG00000006645	UPF3A	66	85.714	ENSXMAG00000013452	upf3a	55	53.125	Xiphophorus_maculatus