EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000007196 (Gene tree)
Gene ID: 102347185
Gene Symbol: RBM47
Alias: FLJ20273|NET18
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 89086 bases
Position: chrJH127267.1:181270-270355
Accession: 102347185
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000008127	RRM_1	PF00076.22	5e-37	1	3
ENSLACP00000008127	RRM_1	PF00076.22	5e-37	2	3
ENSLACP00000008127	RRM_1	PF00076.22	5e-37	3	3
ENSLACP00000021895	RRM_1	PF00076.22	5.7e-37	1	3
ENSLACP00000021895	RRM_1	PF00076.22	5.7e-37	2	3
ENSLACP00000021895	RRM_1	PF00076.22	5.7e-37	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000026327	RBM47-201	2662	XM_006001479	ENSLACP00000021895	609 (aa)	XP_006001541	M3XGN9
ENSLACT00000008193	RBM47-202	1773	XM_006001480	ENSLACP00000008127	590 (aa)	XP_006001542	H3AEQ6

Gene Model

Click here to download ENSLACG00000007196's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000007196's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000007196	RBM47	51	72.848	ENSLACG00000002062	RBM46	57	72.848
ENSLACG00000007196	RBM47	52	55.128	ENSLACG00000003246	HNRNPR	64	47.666
ENSLACG00000007196	RBM47	52	54.167	ENSLACG00000006547	SYNCRIP	79	45.928
ENSLACG00000007196	RBM47	82	53.690	ENSLACG00000008061	A1CF	89	54.389

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000007196	RBM47	100	84.422	ENSG00000163694	RBM47	100	90.783	Homo_sapiens
ENSLACG00000007196	RBM47	100	78.464	ENSAPOG00000011062	rbm47	93	87.955	Acanthochromis_polyacanthus
ENSLACG00000007196	RBM47	100	81.500	ENSAMEG00000009672	RBM47	100	84.333	Ailuropoda_melanoleuca
ENSLACG00000007196	RBM47	100	79.328	ENSACIG00000011531	rbm47	100	79.160	Amphilophus_citrinellus
ENSLACG00000007196	RBM47	100	80.034	ENSAOCG00000022245	rbm47	93	87.955	Amphiprion_ocellaris
ENSLACG00000007196	RBM47	100	79.832	ENSAPEG00000018304	rbm47	93	87.955	Amphiprion_percula
ENSLACG00000007196	RBM47	100	78.197	ENSATEG00000018400	rbm47	94	80.522	Anabas_testudineus
ENSLACG00000007196	RBM47	100	84.422	ENSAPLG00000013974	RBM47	100	83.585	Anas_platyrhynchos
ENSLACG00000007196	RBM47	100	84.307	ENSACAG00000011833	RBM47	100	84.140	Anolis_carolinensis
ENSLACG00000007196	RBM47	100	84.422	ENSANAG00000029440	RBM47	100	88.032	Aotus_nancymaae
ENSLACG00000007196	RBM47	100	77.578	ENSACLG00000016902	rbm47	93	89.076	Astatotilapia_calliptera
ENSLACG00000007196	RBM47	100	77.087	ENSAMXG00000021794	rbm47	100	77.087	Astyanax_mexicanus
ENSLACG00000007196	RBM47	100	85.210	ENSBTAG00000002356	RBM47	100	85.882	Bos_taurus
ENSLACG00000007196	RBM47	100	84.148	ENSCJAG00000019385	RBM47	100	87.766	Callithrix_jacchus
ENSLACG00000007196	RBM47	96	83.770	ENSCAFG00000015898	RBM47	100	83.752	Canis_familiaris
ENSLACG00000007196	RBM47	82	86.122	ENSCAFG00020010558	RBM47	94	85.224	Canis_lupus_dingo
ENSLACG00000007196	RBM47	100	85.210	ENSCHIG00000026214	RBM47	100	85.882	Capra_hircus
ENSLACG00000007196	RBM47	86	72.549	ENSTSYG00000033612	RBM47	93	72.745	Carlito_syrichta
ENSLACG00000007196	RBM47	100	78.319	ENSCAPG00000008426	RBM47	100	78.824	Cavia_aperea
ENSLACG00000007196	RBM47	100	84.370	ENSCPOG00000014100	RBM47	100	87.798	Cavia_porcellus
ENSLACG00000007196	RBM47	99	57.815	ENSCCAG00000024397	-	99	57.983	Cebus_capucinus
ENSLACG00000007196	RBM47	100	84.486	ENSCCAG00000030129	-	100	88.564	Cebus_capucinus
ENSLACG00000007196	RBM47	100	85.135	ENSCATG00000042064	RBM47	100	88.298	Cercocebus_atys
ENSLACG00000007196	RBM47	100	83.838	ENSCLAG00000001684	RBM47	100	87.533	Chinchilla_lanigera
ENSLACG00000007196	RBM47	100	84.422	ENSCSAG00000017060	RBM47	100	85.260	Chlorocebus_sabaeus
ENSLACG00000007196	RBM47	89	81.941	ENSCHOG00000011731	RBM47	88	81.941	Choloepus_hoffmanni
ENSLACG00000007196	RBM47	100	88.423	ENSCPBG00000013831	RBM47	100	88.255	Chrysemys_picta_bellii
ENSLACG00000007196	RBM47	100	85.642	ENSCANG00000019997	RBM47	100	88.298	Colobus_angolensis_palliatus
ENSLACG00000007196	RBM47	88	81.649	ENSCGRG00001020102	-	99	81.649	Cricetulus_griseus_chok1gshd
ENSLACG00000007196	RBM47	100	83.167	ENSCGRG00001000623	-	100	86.170	Cricetulus_griseus_chok1gshd
ENSLACG00000007196	RBM47	100	82.333	ENSCGRG00000007762	-	100	86.076	Cricetulus_griseus_crigri
ENSLACG00000007196	RBM47	88	81.383	ENSCGRG00000014760	-	99	81.383	Cricetulus_griseus_crigri
ENSLACG00000007196	RBM47	100	76.549	ENSCSEG00000004545	rbm47	100	76.549	Cynoglossus_semilaevis
ENSLACG00000007196	RBM47	100	78.319	ENSCVAG00000020144	rbm47	93	88.764	Cyprinodon_variegatus
ENSLACG00000007196	RBM47	100	77.011	ENSDARG00000061985	rbm47	100	77.340	Danio_rerio
ENSLACG00000007196	RBM47	100	83.165	ENSDNOG00000046854	RBM47	100	85.185	Dasypus_novemcinctus
ENSLACG00000007196	RBM47	100	83.860	ENSDORG00000010144	Rbm47	100	84.692	Dipodomys_ordii
ENSLACG00000007196	RBM47	100	84.641	ENSETEG00000009194	RBM47	100	84.641	Echinops_telfairi
ENSLACG00000007196	RBM47	99	56.860	ENSEBUG00000011912	rbm47	88	62.476	Eptatretus_burgeri
ENSLACG00000007196	RBM47	100	83.866	ENSEASG00005008443	RBM47	100	85.546	Equus_asinus_asinus
ENSLACG00000007196	RBM47	100	83.866	ENSECAG00000004400	RBM47	100	85.546	Equus_caballus
ENSLACG00000007196	RBM47	75	89.610	ENSEEUG00000001194	RBM47	75	88.745	Erinaceus_europaeus
ENSLACG00000007196	RBM47	100	74.110	ENSELUG00000006148	rbm47	93	87.955	Esox_lucius
ENSLACG00000007196	RBM47	100	85.160	ENSFCAG00000012399	RBM47	100	86.678	Felis_catus
ENSLACG00000007196	RBM47	100	86.265	ENSFALG00000002861	RBM47	100	86.265	Ficedula_albicollis
ENSLACG00000007196	RBM47	100	82.997	ENSFDAG00000016326	RBM47	100	84.615	Fukomys_damarensis
ENSLACG00000007196	RBM47	100	79.027	ENSFHEG00000007938	rbm47	100	77.983	Fundulus_heteroclitus
ENSLACG00000007196	RBM47	100	73.990	ENSGMOG00000014802	rbm47	94	77.069	Gadus_morhua
ENSLACG00000007196	RBM47	63	88.298	ENSGALG00000014267	RBM47	100	89.655	Gallus_gallus
ENSLACG00000007196	RBM47	63	85.904	ENSGAFG00000020571	rbm47	98	85.904	Gambusia_affinis
ENSLACG00000007196	RBM47	100	75.410	ENSGACG00000016223	rbm47	93	85.112	Gasterosteus_aculeatus
ENSLACG00000007196	RBM47	100	88.423	ENSGAGG00000020051	RBM47	100	88.255	Gopherus_agassizii
ENSLACG00000007196	RBM47	100	85.135	ENSGGOG00000001367	RBM47	100	88.298	Gorilla_gorilla
ENSLACG00000007196	RBM47	100	77.325	ENSHBUG00000003520	rbm47	94	85.600	Haplochromis_burtoni
ENSLACG00000007196	RBM47	84	72.441	ENSHGLG00000016914	RBM47	100	86.076	Heterocephalus_glaber_female
ENSLACG00000007196	RBM47	100	74.242	ENSHGLG00100003071	-	100	74.579	Heterocephalus_glaber_male
ENSLACG00000007196	RBM47	100	81.987	ENSHGLG00100014028	-	100	86.076	Heterocephalus_glaber_male
ENSLACG00000007196	RBM47	99	77.946	ENSHCOG00000002074	rbm47	93	87.640	Hippocampus_comes
ENSLACG00000007196	RBM47	100	78.992	ENSIPUG00000004743	rbm47	96	83.420	Ictalurus_punctatus
ENSLACG00000007196	RBM47	100	84.281	ENSSTOG00000004727	RBM47	100	87.268	Ictidomys_tridecemlineatus
ENSLACG00000007196	RBM47	100	82.667	ENSJJAG00000013823	Rbm47	100	83.500	Jaculus_jaculus
ENSLACG00000007196	RBM47	100	78.798	ENSKMAG00000000084	rbm47	93	87.709	Kryptolebias_marmoratus
ENSLACG00000007196	RBM47	100	78.487	ENSLBEG00000008436	rbm47	92	88.102	Labrus_bergylta
ENSLACG00000007196	RBM47	100	85.666	ENSLOCG00000012966	rbm47	95	85.497	Lepisosteus_oculatus
ENSLACG00000007196	RBM47	100	85.260	ENSLAFG00000011998	RBM47	100	85.427	Loxodonta_africana
ENSLACG00000007196	RBM47	100	85.135	ENSMFAG00000037967	RBM47	100	88.298	Macaca_fascicularis
ENSLACG00000007196	RBM47	100	84.422	ENSMMUG00000012036	RBM47	100	89.637	Macaca_mulatta
ENSLACG00000007196	RBM47	100	85.135	ENSMNEG00000040774	RBM47	100	88.298	Macaca_nemestrina
ENSLACG00000007196	RBM47	100	90.476	ENSMLEG00000041432	RBM47	100	90.476	Mandrillus_leucophaeus
ENSLACG00000007196	RBM47	100	77.504	ENSMAMG00000019143	rbm47	94	87.675	Mastacembelus_armatus
ENSLACG00000007196	RBM47	100	77.578	ENSMZEG00005023659	rbm47	93	89.076	Maylandia_zebra
ENSLACG00000007196	RBM47	100	86.288	ENSMGAG00000012226	RBM47	100	86.957	Meleagris_gallopavo
ENSLACG00000007196	RBM47	100	82.638	ENSMAUG00000006493	Rbm47	100	86.709	Mesocricetus_auratus
ENSLACG00000007196	RBM47	100	81.356	ENSMICG00000026417	RBM47	100	82.620	Microcebus_murinus
ENSLACG00000007196	RBM47	100	82.609	ENSMOCG00000021170	Rbm47	100	85.904	Microtus_ochrogaster
ENSLACG00000007196	RBM47	100	78.125	ENSMMOG00000007260	rbm47	95	80.522	Mola_mola
ENSLACG00000007196	RBM47	52	81.029	ENSMODG00000015426	-	98	79.747	Monodelphis_domestica
ENSLACG00000007196	RBM47	100	85.906	ENSMODG00000007003	RBM47	100	85.906	Monodelphis_domestica
ENSLACG00000007196	RBM47	100	77.496	ENSMODG00000020561	-	100	78.003	Monodelphis_domestica
ENSLACG00000007196	RBM47	100	77.629	ENSMALG00000005167	rbm47	94	87.395	Monopterus_albus
ENSLACG00000007196	RBM47	100	82.915	MGP_CAROLIEiJ_G0027258	Rbm47	100	85.904	Mus_caroli
ENSLACG00000007196	RBM47	100	83.250	ENSMUSG00000070780	Rbm47	100	86.170	Mus_musculus
ENSLACG00000007196	RBM47	100	82.915	MGP_PahariEiJ_G0017040	Rbm47	100	85.638	Mus_pahari
ENSLACG00000007196	RBM47	100	83.670	MGP_SPRETEiJ_G0028253	Rbm47	100	86.170	Mus_spretus
ENSLACG00000007196	RBM47	100	84.590	ENSMPUG00000006177	RBM47	94	85.595	Mustela_putorius_furo
ENSLACG00000007196	RBM47	100	85.042	ENSMLUG00000000889	RBM47	100	86.050	Myotis_lucifugus
ENSLACG00000007196	RBM47	100	83.472	ENSNGAG00000003325	Rbm47	100	84.140	Nannospalax_galili
ENSLACG00000007196	RBM47	100	77.614	ENSNBRG00000015092	rbm47	95	80.517	Neolamprologus_brichardi
ENSLACG00000007196	RBM47	100	85.135	ENSNLEG00000017151	RBM47	100	88.298	Nomascus_leucogenys
ENSLACG00000007196	RBM47	72	84.615	ENSMEUG00000009516	-	99	84.906	Notamacropus_eugenii
ENSLACG00000007196	RBM47	75	89.167	ENSOPRG00000016507	-	75	89.167	Ochotona_princeps
ENSLACG00000007196	RBM47	100	83.670	ENSODEG00000004873	RBM47	100	84.007	Octodon_degus
ENSLACG00000007196	RBM47	100	77.778	ENSONIG00000009061	rbm47	94	80.382	Oreochromis_niloticus
ENSLACG00000007196	RBM47	100	84.448	ENSOANG00000008978	RBM47	100	85.284	Ornithorhynchus_anatinus
ENSLACG00000007196	RBM47	100	85.042	ENSOCUG00000012034	RBM47	100	85.546	Oryctolagus_cuniculus
ENSLACG00000007196	RBM47	100	77.722	ENSORLG00000005847	rbm47	94	83.777	Oryzias_latipes
ENSLACG00000007196	RBM47	100	77.722	ENSORLG00020005154	rbm47	94	83.777	Oryzias_latipes_hni
ENSLACG00000007196	RBM47	100	77.349	ENSORLG00015000066	rbm47	94	83.511	Oryzias_latipes_hsok
ENSLACG00000007196	RBM47	100	79.027	ENSOMEG00000010730	rbm47	100	78.319	Oryzias_melastigma
ENSLACG00000007196	RBM47	100	78.078	ENSOGAG00000025193	-	100	79.258	Otolemur_garnettii
ENSLACG00000007196	RBM47	100	84.087	ENSOGAG00000029367	-	100	85.092	Otolemur_garnettii
ENSLACG00000007196	RBM47	100	76.975	ENSOARG00000012711	RBM47	100	77.647	Ovis_aries
ENSLACG00000007196	RBM47	100	85.135	ENSPPAG00000029763	RBM47	100	85.811	Pan_paniscus
ENSLACG00000007196	RBM47	100	83.305	ENSPPRG00000012873	RBM47	99	88.533	Panthera_pardus
ENSLACG00000007196	RBM47	85	83.135	ENSPTIG00000017046	RBM47	100	83.730	Panthera_tigris_altaica
ENSLACG00000007196	RBM47	100	85.135	ENSPTRG00000016006	RBM47	100	88.298	Pan_troglodytes
ENSLACG00000007196	RBM47	100	85.135	ENSPANG00000005980	RBM47	100	88.298	Papio_anubis
ENSLACG00000007196	RBM47	96	76.736	ENSPKIG00000013431	RBM47	92	89.577	Paramormyrops_kingsleyae
ENSLACG00000007196	RBM47	96	79.232	ENSPKIG00000005037	rbm47	100	77.575	Paramormyrops_kingsleyae
ENSLACG00000007196	RBM47	89	88.636	ENSPSIG00000017516	RBM47	97	88.447	Pelodiscus_sinensis
ENSLACG00000007196	RBM47	100	76.936	ENSPMGG00000018540	rbm47	100	76.768	Periophthalmus_magnuspinnatus
ENSLACG00000007196	RBM47	100	82.638	ENSPEMG00000011088	Rbm47	100	85.904	Peromyscus_maniculatus_bairdii
ENSLACG00000007196	RBM47	96	80.829	ENSPFOG00000007997	rbm47	94	79.758	Poecilia_formosa
ENSLACG00000007196	RBM47	96	80.796	ENSPLAG00000002072	rbm47	100	85.411	Poecilia_latipinna
ENSLACG00000007196	RBM47	100	79.500	ENSPMEG00000017492	rbm47	93	88.483	Poecilia_mexicana
ENSLACG00000007196	RBM47	96	80.796	ENSPREG00000008456	rbm47	100	85.411	Poecilia_reticulata
ENSLACG00000007196	RBM47	98	73.445	ENSPPYG00000014688	RBM47	98	72.821	Pongo_abelii
ENSLACG00000007196	RBM47	81	87.250	ENSPCAG00000011879	RBM47	81	88.500	Procavia_capensis
ENSLACG00000007196	RBM47	100	81.956	ENSPCOG00000023451	RBM47	100	84.350	Propithecus_coquereli
ENSLACG00000007196	RBM47	100	84.448	ENSPVAG00000003812	RBM47	100	85.117	Pteropus_vampyrus
ENSLACG00000007196	RBM47	100	77.362	ENSPNYG00000022868	rbm47	95	79.725	Pundamilia_nyererei
ENSLACG00000007196	RBM47	100	75.738	ENSPNAG00000007940	rbm47	100	77.087	Pygocentrus_nattereri
ENSLACG00000007196	RBM47	100	83.250	ENSRNOG00000002408	Rbm47	100	83.920	Rattus_norvegicus
ENSLACG00000007196	RBM47	100	85.642	ENSRBIG00000039601	RBM47	100	88.298	Rhinopithecus_bieti
ENSLACG00000007196	RBM47	100	85.642	ENSRROG00000044696	RBM47	100	88.298	Rhinopithecus_roxellana
ENSLACG00000007196	RBM47	100	81.757	ENSSBOG00000028475	RBM47	100	87.164	Saimiri_boliviensis_boliviensis
ENSLACG00000007196	RBM47	100	85.859	ENSSHAG00000017576	RBM47	100	86.532	Sarcophilus_harrisii
ENSLACG00000007196	RBM47	100	75.377	ENSSFOG00015024101	RBM47	96	77.951	Scleropages_formosus
ENSLACG00000007196	RBM47	100	74.752	ENSSFOG00015012445	rbm47	100	74.917	Scleropages_formosus
ENSLACG00000007196	RBM47	100	75.614	ENSSMAG00000009744	rbm47	93	85.955	Scophthalmus_maximus
ENSLACG00000007196	RBM47	100	79.530	ENSSDUG00000022684	rbm47	100	78.992	Seriola_dumerili
ENSLACG00000007196	RBM47	100	79.899	ENSSLDG00000003109	rbm47	92	88.202	Seriola_lalandi_dorsalis
ENSLACG00000007196	RBM47	85	87.277	ENSSARG00000001735	RBM47	84	87.500	Sorex_araneus
ENSLACG00000007196	RBM47	100	85.811	ENSSPUG00000007515	RBM47	100	89.628	Sphenodon_punctatus
ENSLACG00000007196	RBM47	100	80.201	ENSSPAG00000001257	rbm47	93	88.235	Stegastes_partitus
ENSLACG00000007196	RBM47	100	85.042	ENSSSCG00000008796	RBM47	100	85.378	Sus_scrofa
ENSLACG00000007196	RBM47	100	86.409	ENSTGUG00000008705	RBM47	100	86.409	Taeniopygia_guttata
ENSLACG00000007196	RBM47	100	77.852	ENSTRUG00000014050	rbm47	100	77.441	Takifugu_rubripes
ENSLACG00000007196	RBM47	100	76.316	ENSTNIG00000006127	rbm47	94	79.407	Tetraodon_nigroviridis
ENSLACG00000007196	RBM47	77	83.690	ENSTBEG00000001607	RBM47	76	83.690	Tupaia_belangeri
ENSLACG00000007196	RBM47	100	85.017	ENSTTRG00000002839	RBM47	100	85.522	Tursiops_truncatus
ENSLACG00000007196	RBM47	100	83.752	ENSUAMG00000021346	RBM47	100	84.757	Ursus_americanus
ENSLACG00000007196	RBM47	58	86.897	ENSVPAG00000000641	-	56	86.897	Vicugna_pacos
ENSLACG00000007196	RBM47	96	85.140	ENSVVUG00000014774	RBM47	100	83.893	Vulpes_vulpes
ENSLACG00000007196	RBM47	100	84.590	ENSXETG00000012802	rbm47	100	84.925	Xenopus_tropicalis
ENSLACG00000007196	RBM47	89	85.411	ENSXCOG00000000780	rbm47	100	85.411	Xiphophorus_couchianus
ENSLACG00000007196	RBM47	100	79.564	ENSXMAG00000009874	rbm47	93	88.202	Xiphophorus_maculatus