EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000007452 (Gene tree)
Gene ID: 102361561
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 36586 bases
Position: chrJH128287.1:276775-313360
Accession: 102361561
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000008418	zf-C2H2	PF00096.26	8.9e-22	1	3
ENSLACP00000008418	zf-C2H2	PF00096.26	8.9e-22	2	3
ENSLACP00000008418	zf-C2H2	PF00096.26	8.9e-22	3	3
ENSLACP00000008418	zf-met	PF12874.7	5.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000008486	PRDM4-201	3046	XM_006008203	ENSLACP00000008418	795 (aa)	XP_006008265	H3AFJ7

Gene Model

Click here to download ENSLACG00000007452's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000007452's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000007452	PRDM4	99	73.020	ENSG00000110851	PRDM4	98	75.824	Homo_sapiens
ENSLACG00000007452	PRDM4	99	73.424	ENSAMEG00000016174	PRDM4	99	72.435	Ailuropoda_melanoleuca
ENSLACG00000007452	PRDM4	99	73.762	ENSAPLG00000009846	PRDM4	99	73.391	Anas_platyrhynchos
ENSLACG00000007452	PRDM4	99	72.772	ENSANAG00000024800	PRDM4	99	72.525	Aotus_nancymaae
ENSLACG00000007452	PRDM4	99	73.267	ENSBTAG00000012999	PRDM4	99	73.020	Bos_taurus
ENSLACG00000007452	PRDM4	99	75.758	ENSCJAG00000015261	PRDM4	99	72.772	Callithrix_jacchus
ENSLACG00000007452	PRDM4	99	73.886	ENSCAFG00000001788	PRDM4	99	73.144	Canis_familiaris
ENSLACG00000007452	PRDM4	99	73.886	ENSCAFG00020004916	PRDM4	99	73.144	Canis_lupus_dingo
ENSLACG00000007452	PRDM4	99	73.144	ENSCHIG00000019409	PRDM4	99	72.401	Capra_hircus
ENSLACG00000007452	PRDM4	99	73.391	ENSTSYG00000009248	PRDM4	99	72.649	Carlito_syrichta
ENSLACG00000007452	PRDM4	99	71.163	ENSCAPG00000013937	PRDM4	99	70.916	Cavia_aperea
ENSLACG00000007452	PRDM4	99	70.762	ENSCPOG00000022385	PRDM4	100	70.516	Cavia_porcellus
ENSLACG00000007452	PRDM4	99	73.020	ENSCCAG00000036033	PRDM4	99	72.772	Cebus_capucinus
ENSLACG00000007452	PRDM4	99	72.772	ENSCATG00000044797	PRDM4	99	72.525	Cercocebus_atys
ENSLACG00000007452	PRDM4	99	71.656	ENSCLAG00000007545	PRDM4	100	71.902	Chinchilla_lanigera
ENSLACG00000007452	PRDM4	99	73.020	ENSCSAG00000002896	PRDM4	99	72.772	Chlorocebus_sabaeus
ENSLACG00000007452	PRDM4	71	79.245	ENSCHOG00000001744	PRDM4	85	79.245	Choloepus_hoffmanni
ENSLACG00000007452	PRDM4	99	74.752	ENSCPBG00000023187	PRDM4	100	74.629	Chrysemys_picta_bellii
ENSLACG00000007452	PRDM4	99	73.020	ENSCANG00000021804	PRDM4	99	72.772	Colobus_angolensis_palliatus
ENSLACG00000007452	PRDM4	99	71.288	ENSCGRG00001015102	-	100	71.043	Cricetulus_griseus_chok1gshd
ENSLACG00000007452	PRDM4	97	71.628	ENSCGRG00000004044	-	100	71.374	Cricetulus_griseus_crigri
ENSLACG00000007452	PRDM4	99	73.416	ENSDNOG00000032478	PRDM4	99	73.601	Dasypus_novemcinctus
ENSLACG00000007452	PRDM4	99	60.396	ENSDORG00000015081	-	100	60.149	Dipodomys_ordii
ENSLACG00000007452	PRDM4	93	46.217	ENSEBUG00000003775	prdm4	99	46.217	Eptatretus_burgeri
ENSLACG00000007452	PRDM4	99	73.762	ENSECAG00000015423	PRDM4	100	73.046	Equus_caballus
ENSLACG00000007452	PRDM4	95	72.105	ENSEEUG00000006569	PRDM4	99	71.842	Erinaceus_europaeus
ENSLACG00000007452	PRDM4	94	64.369	ENSELUG00000015265	prdm4	94	64.629	Esox_lucius
ENSLACG00000007452	PRDM4	99	73.391	ENSFCAG00000022478	PRDM4	99	72.649	Felis_catus
ENSLACG00000007452	PRDM4	99	74.629	ENSFALG00000013342	PRDM4	100	74.381	Ficedula_albicollis
ENSLACG00000007452	PRDM4	99	73.333	ENSGALG00000012619	PRDM4	99	72.963	Gallus_gallus
ENSLACG00000007452	PRDM4	99	74.505	ENSGAGG00000002763	PRDM4	95	74.381	Gopherus_agassizii
ENSLACG00000007452	PRDM4	99	73.144	ENSGGOG00000001244	PRDM4	99	72.896	Gorilla_gorilla
ENSLACG00000007452	PRDM4	99	71.411	ENSHGLG00000004590	PRDM4	98	71.163	Heterocephalus_glaber_female
ENSLACG00000007452	PRDM4	99	70.588	ENSHGLG00100007464	PRDM4	100	70.343	Heterocephalus_glaber_male
ENSLACG00000007452	PRDM4	94	61.387	ENSIPUG00000024162	prdm4	93	61.518	Ictalurus_punctatus
ENSLACG00000007452	PRDM4	99	72.896	ENSSTOG00000016168	PRDM4	99	72.401	Ictidomys_tridecemlineatus
ENSLACG00000007452	PRDM4	79	72.426	ENSJJAG00000022448	-	94	68.198	Jaculus_jaculus
ENSLACG00000007452	PRDM4	75	53.617	ENSLOCG00000017092	prdm4	100	53.617	Lepisosteus_oculatus
ENSLACG00000007452	PRDM4	94	74.476	ENSLAFG00000001483	PRDM4	97	73.992	Loxodonta_africana
ENSLACG00000007452	PRDM4	99	73.020	ENSMFAG00000041862	PRDM4	99	72.772	Macaca_fascicularis
ENSLACG00000007452	PRDM4	99	73.020	ENSMMUG00000015550	PRDM4	99	72.772	Macaca_mulatta
ENSLACG00000007452	PRDM4	99	73.020	ENSMNEG00000032319	PRDM4	99	72.772	Macaca_nemestrina
ENSLACG00000007452	PRDM4	99	72.896	ENSMLEG00000039607	PRDM4	99	72.649	Mandrillus_leucophaeus
ENSLACG00000007452	PRDM4	99	67.407	ENSMGAG00000012815	PRDM4	100	67.037	Meleagris_gallopavo
ENSLACG00000007452	PRDM4	99	72.153	ENSMICG00000007807	PRDM4	99	71.990	Microcebus_murinus
ENSLACG00000007452	PRDM4	99	72.070	ENSMOCG00000000753	Prdm4	99	71.945	Microtus_ochrogaster
ENSLACG00000007452	PRDM4	99	71.906	ENSMUSG00000035529	Prdm4	100	71.040	Mus_musculus
ENSLACG00000007452	PRDM4	99	71.906	MGP_PahariEiJ_G0031398	Prdm4	100	71.287	Mus_pahari
ENSLACG00000007452	PRDM4	99	72.277	MGP_SPRETEiJ_G0016505	Prdm4	100	71.287	Mus_spretus
ENSLACG00000007452	PRDM4	99	68.103	ENSMPUG00000012238	PRDM4	99	67.118	Mustela_putorius_furo
ENSLACG00000007452	PRDM4	99	73.020	ENSMLUG00000000767	PRDM4	99	72.277	Myotis_lucifugus
ENSLACG00000007452	PRDM4	99	73.144	ENSNGAG00000018627	Prdm4	100	72.896	Nannospalax_galili
ENSLACG00000007452	PRDM4	99	73.020	ENSNLEG00000006748	PRDM4	99	72.772	Nomascus_leucogenys
ENSLACG00000007452	PRDM4	88	77.358	ENSMEUG00000004495	PRDM4	84	81.606	Notamacropus_eugenii
ENSLACG00000007452	PRDM4	89	74.052	ENSOPRG00000010192	PRDM4	89	73.469	Ochotona_princeps
ENSLACG00000007452	PRDM4	99	71.945	ENSODEG00000014750	PRDM4	99	72.070	Octodon_degus
ENSLACG00000007452	PRDM4	99	74.134	ENSOANG00000005526	PRDM4	99	73.762	Ornithorhynchus_anatinus
ENSLACG00000007452	PRDM4	94	74.359	ENSOCUG00000012859	PRDM4	96	74.074	Oryctolagus_cuniculus
ENSLACG00000007452	PRDM4	99	73.144	ENSOGAG00000011945	PRDM4	100	72.896	Otolemur_garnettii
ENSLACG00000007452	PRDM4	99	73.267	ENSOARG00000017955	PRDM4	99	72.525	Ovis_aries
ENSLACG00000007452	PRDM4	99	73.144	ENSPPAG00000038438	PRDM4	99	72.896	Pan_paniscus
ENSLACG00000007452	PRDM4	99	73.391	ENSPPRG00000004144	PRDM4	99	72.649	Panthera_pardus
ENSLACG00000007452	PRDM4	99	73.391	ENSPTIG00000005847	PRDM4	99	72.649	Panthera_tigris_altaica
ENSLACG00000007452	PRDM4	99	73.020	ENSPTRG00000005400	PRDM4	99	72.772	Pan_troglodytes
ENSLACG00000007452	PRDM4	99	73.020	ENSPANG00000022084	PRDM4	99	72.772	Papio_anubis
ENSLACG00000007452	PRDM4	94	64.331	ENSPKIG00000000875	prdm4	93	64.459	Paramormyrops_kingsleyae
ENSLACG00000007452	PRDM4	87	77.901	ENSPSIG00000012066	PRDM4	100	77.901	Pelodiscus_sinensis
ENSLACG00000007452	PRDM4	99	72.401	ENSPEMG00000014598	Prdm4	100	71.906	Peromyscus_maniculatus_bairdii
ENSLACG00000007452	PRDM4	94	75.754	ENSPCIG00000009471	PRDM4	94	75.753	Phascolarctos_cinereus
ENSLACG00000007452	PRDM4	99	72.896	ENSPPYG00000004913	PRDM4	99	72.649	Pongo_abelii
ENSLACG00000007452	PRDM4	83	72.452	ENSPCAG00000009987	PRDM4	83	72.134	Procavia_capensis
ENSLACG00000007452	PRDM4	99	71.782	ENSPCOG00000021060	PRDM4	99	71.040	Propithecus_coquereli
ENSLACG00000007452	PRDM4	99	73.020	ENSPVAG00000001596	PRDM4	99	72.401	Pteropus_vampyrus
ENSLACG00000007452	PRDM4	99	71.535	ENSRNOG00000004962	Prdm4	100	71.040	Rattus_norvegicus
ENSLACG00000007452	PRDM4	99	73.144	ENSRBIG00000035488	PRDM4	99	72.896	Rhinopithecus_bieti
ENSLACG00000007452	PRDM4	99	73.020	ENSRROG00000012779	PRDM4	99	72.772	Rhinopithecus_roxellana
ENSLACG00000007452	PRDM4	99	76.364	ENSSBOG00000000403	PRDM4	99	72.772	Saimiri_boliviensis_boliviensis
ENSLACG00000007452	PRDM4	94	67.666	ENSSFOG00015023358	prdm4	94	67.797	Scleropages_formosus
ENSLACG00000007452	PRDM4	99	73.639	ENSSSCG00000000160	PRDM4	99	72.649	Sus_scrofa
ENSLACG00000007452	PRDM4	99	74.505	ENSTGUG00000010962	-	99	74.257	Taeniopygia_guttata
ENSLACG00000007452	PRDM4	81	66.216	ENSTBEG00000001732	PRDM4	84	65.878	Tupaia_belangeri
ENSLACG00000007452	PRDM4	99	72.772	ENSTTRG00000011056	PRDM4	99	72.030	Tursiops_truncatus
ENSLACG00000007452	PRDM4	99	73.515	ENSUAMG00000022796	PRDM4	99	72.772	Ursus_americanus
ENSLACG00000007452	PRDM4	99	73.665	ENSUMAG00000017231	PRDM4	99	72.772	Ursus_maritimus
ENSLACG00000007452	PRDM4	99	73.267	ENSVPAG00000002215	PRDM4	100	72.772	Vicugna_pacos
ENSLACG00000007452	PRDM4	99	73.886	ENSVVUG00000023397	PRDM4	99	73.144	Vulpes_vulpes