EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000007661 (Gene tree)
Gene ID: 102349744
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: vigilin-like
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 31804 bases
Position: chrJH127111.1:291064-322867
Accession: 102349744
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000008666	KH_1	PF00013.29	2.4e-137	1	10
ENSLACP00000008666	KH_1	PF00013.29	2.4e-137	2	10
ENSLACP00000008666	KH_1	PF00013.29	2.4e-137	3	10
ENSLACP00000008666	KH_1	PF00013.29	2.4e-137	4	10
ENSLACP00000008666	KH_1	PF00013.29	2.4e-137	5	10
ENSLACP00000008666	KH_1	PF00013.29	2.4e-137	6	10
ENSLACP00000008666	KH_1	PF00013.29	2.4e-137	7	10
ENSLACP00000008666	KH_1	PF00013.29	2.4e-137	8	10
ENSLACP00000008666	KH_1	PF00013.29	2.4e-137	9	10
ENSLACP00000008666	KH_1	PF00013.29	2.4e-137	10	10

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000008734	-	3474	XM_005999819	ENSLACP00000008666	1157 (aa)	-	H3AG95

Gene Model

Click here to download ENSLACG00000007661's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000007661's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000007661	hdlbpb	100	67.854	ENSLACG00000003592	HDLBP	100	67.854

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000007661	hdlbpb	94	85.189	ENSAPOG00000006904	hdlbpb	100	85.189	Acanthochromis_polyacanthus
ENSLACG00000007661	hdlbpb	100	68.978	ENSACIG00000016154	hdlbpb	100	68.978	Amphilophus_citrinellus
ENSLACG00000007661	hdlbpb	90	85.189	ENSAOCG00000004083	hdlbpb	100	85.189	Amphiprion_ocellaris
ENSLACG00000007661	hdlbpb	90	85.189	ENSAPEG00000012270	hdlbpb	100	85.189	Amphiprion_percula
ENSLACG00000007661	hdlbpb	90	85.189	ENSATEG00000019877	hdlbpb	100	85.189	Anabas_testudineus
ENSLACG00000007661	hdlbpb	100	89.886	ENSACAG00000003606	-	100	89.886	Anolis_carolinensis
ENSLACG00000007661	hdlbpb	90	84.960	ENSACLG00000006618	hdlbpb	100	84.960	Astatotilapia_calliptera
ENSLACG00000007661	hdlbpb	100	75.917	ENSAMXG00000019946	hdlbpb	100	75.917	Astyanax_mexicanus
ENSLACG00000007661	hdlbpb	100	84.247	ENSCSEG00000000955	hdlbpb	100	84.375	Cynoglossus_semilaevis
ENSLACG00000007661	hdlbpb	90	84.845	ENSCVAG00000005345	hdlbpb	100	84.845	Cyprinodon_variegatus
ENSLACG00000007661	hdlbpb	92	82.874	ENSDARG00000061864	hdlbpb	99	69.755	Danio_rerio
ENSLACG00000007661	hdlbpb	94	63.201	ENSEBUG00000005304	hdlbpb	98	63.201	Eptatretus_burgeri
ENSLACG00000007661	hdlbpb	100	75.553	ENSELUG00000019925	hdlbpb	100	75.553	Esox_lucius
ENSLACG00000007661	hdlbpb	100	67.261	ENSFHEG00000001701	hdlbpb	100	67.261	Fundulus_heteroclitus
ENSLACG00000007661	hdlbpb	95	79.180	ENSGMOG00000004522	hdlbpb	74	79.180	Gadus_morhua
ENSLACG00000007661	hdlbpb	92	85.075	ENSGAFG00000005278	hdlbpb	100	85.075	Gambusia_affinis
ENSLACG00000007661	hdlbpb	90	82.319	ENSGACG00000019361	hdlbpb	100	82.434	Gasterosteus_aculeatus
ENSLACG00000007661	hdlbpb	90	84.960	ENSHBUG00000018434	hdlbpb	100	84.960	Haplochromis_burtoni
ENSLACG00000007661	hdlbpb	100	70.916	ENSIPUG00000003291	HDLBP	100	70.916	Ictalurus_punctatus
ENSLACG00000007661	hdlbpb	90	84.845	ENSKMAG00000016562	hdlbpb	100	84.845	Kryptolebias_marmoratus
ENSLACG00000007661	hdlbpb	90	84.386	ENSLBEG00000027855	hdlbpb	100	84.386	Labrus_bergylta
ENSLACG00000007661	hdlbpb	91	73.088	ENSLOCG00000013909	hdlbpb	95	73.088	Lepisosteus_oculatus
ENSLACG00000007661	hdlbpb	90	85.075	ENSMAMG00000003035	hdlbpb	100	85.075	Mastacembelus_armatus
ENSLACG00000007661	hdlbpb	90	84.960	ENSMZEG00005021465	hdlbpb	100	84.960	Maylandia_zebra
ENSLACG00000007661	hdlbpb	90	84.730	ENSMMOG00000012525	hdlbpb	100	84.730	Mola_mola
ENSLACG00000007661	hdlbpb	90	83.238	ENSMALG00000008938	hdlbpb	100	83.238	Monopterus_albus
ENSLACG00000007661	hdlbpb	90	84.960	ENSNBRG00000002236	hdlbpb	100	84.960	Neolamprologus_brichardi
ENSLACG00000007661	hdlbpb	90	84.960	ENSONIG00000009211	hdlbpb	100	84.960	Oreochromis_niloticus
ENSLACG00000007661	hdlbpb	90	85.649	ENSORLG00000006581	hdlbpb	100	85.649	Oryzias_latipes
ENSLACG00000007661	hdlbpb	90	85.534	ENSORLG00020010012	hdlbpb	100	85.534	Oryzias_latipes_hni
ENSLACG00000007661	hdlbpb	90	85.649	ENSORLG00015006863	hdlbpb	100	85.649	Oryzias_latipes_hsok
ENSLACG00000007661	hdlbpb	88	85.304	ENSOMEG00000011131	hdlbpb	98	85.304	Oryzias_melastigma
ENSLACG00000007661	hdlbpb	100	70.815	ENSPKIG00000005966	hdlbpb	100	70.815	Paramormyrops_kingsleyae
ENSLACG00000007661	hdlbpb	75	81.267	ENSPMGG00000019853	hdlbpb	99	81.267	Periophthalmus_magnuspinnatus
ENSLACG00000007661	hdlbpb	90	75.085	ENSPMAG00000002131	hdlbpb	100	75.085	Petromyzon_marinus
ENSLACG00000007661	hdlbpb	81	52.486	ENSPMAG00000000249	-	98	52.486	Petromyzon_marinus
ENSLACG00000007661	hdlbpb	100	73.152	ENSPFOG00000008755	hdlbpb	100	73.152	Poecilia_formosa
ENSLACG00000007661	hdlbpb	92	85.075	ENSPLAG00000007055	hdlbpb	100	85.075	Poecilia_latipinna
ENSLACG00000007661	hdlbpb	92	84.960	ENSPMEG00000001952	hdlbpb	100	84.960	Poecilia_mexicana
ENSLACG00000007661	hdlbpb	92	85.189	ENSPREG00000012848	hdlbpb	100	85.189	Poecilia_reticulata
ENSLACG00000007661	hdlbpb	90	84.960	ENSPNYG00000022467	hdlbpb	100	84.960	Pundamilia_nyererei
ENSLACG00000007661	hdlbpb	100	83.563	ENSPNAG00000011104	hdlbpb	100	71.792	Pygocentrus_nattereri
ENSLACG00000007661	hdlbpb	90	84.598	ENSSFOG00015023199	hdlbpb	100	84.598	Scleropages_formosus
ENSLACG00000007661	hdlbpb	90	84.960	ENSSMAG00000008790	hdlbpb	100	84.960	Scophthalmus_maximus
ENSLACG00000007661	hdlbpb	90	85.189	ENSSDUG00000020694	hdlbpb	100	85.189	Seriola_dumerili
ENSLACG00000007661	hdlbpb	91	85.189	ENSSLDG00000020807	hdlbpb	100	85.189	Seriola_lalandi_dorsalis
ENSLACG00000007661	hdlbpb	91	90.455	ENSSPUG00000018688	-	100	90.455	Sphenodon_punctatus
ENSLACG00000007661	hdlbpb	90	85.075	ENSSPAG00000016969	hdlbpb	100	85.075	Stegastes_partitus
ENSLACG00000007661	hdlbpb	97	69.069	ENSTRUG00000012888	hdlbpb	99	72.326	Takifugu_rubripes
ENSLACG00000007661	hdlbpb	99	70.652	ENSTNIG00000002555	hdlbpb	100	70.652	Tetraodon_nigroviridis
ENSLACG00000007661	hdlbpb	100	62.428	ENSXCOG00000001797	hdlbpb	100	62.428	Xiphophorus_couchianus
ENSLACG00000007661	hdlbpb	92	84.960	ENSXMAG00000015633	hdlbpb	100	84.960	Xiphophorus_maculatus