EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000007784 (Gene tree)
Gene ID: 102367508
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 19551 bases
Position: chrJH127039.1:298839-318389
Accession: 102367508
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000008810	SMN	PF06003.12	3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000008879	SMNDC1-201	1980	XM_005998790	ENSLACP00000008810	238 (aa)	XP_005998852	H3AGN9

Gene Model

Click here to download ENSLACG00000007784's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000007784's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000007784	SMNDC1	100	84.454	ENSG00000119953	SMNDC1	100	84.454	Homo_sapiens
ENSLACG00000007784	SMNDC1	100	75.630	ENSAPOG00000021772	smndc1	100	75.630	Acanthochromis_polyacanthus
ENSLACG00000007784	SMNDC1	100	84.034	ENSAMEG00000005251	SMNDC1	100	84.034	Ailuropoda_melanoleuca
ENSLACG00000007784	SMNDC1	100	74.370	ENSACIG00000004819	smndc1	100	74.370	Amphilophus_citrinellus
ENSLACG00000007784	SMNDC1	100	75.630	ENSAOCG00000017869	smndc1	100	75.630	Amphiprion_ocellaris
ENSLACG00000007784	SMNDC1	100	75.630	ENSAPEG00000007752	smndc1	100	75.630	Amphiprion_percula
ENSLACG00000007784	SMNDC1	100	76.050	ENSATEG00000006830	smndc1	100	76.050	Anabas_testudineus
ENSLACG00000007784	SMNDC1	83	83.333	ENSAPLG00000004322	SMNDC1	100	83.333	Anas_platyrhynchos
ENSLACG00000007784	SMNDC1	100	82.773	ENSACAG00000005983	SMNDC1	100	82.773	Anolis_carolinensis
ENSLACG00000007784	SMNDC1	100	84.034	ENSANAG00000032875	SMNDC1	100	84.034	Aotus_nancymaae
ENSLACG00000007784	SMNDC1	100	74.790	ENSACLG00000016360	smndc1	100	74.790	Astatotilapia_calliptera
ENSLACG00000007784	SMNDC1	100	76.891	ENSAMXG00000020310	smndc1	100	76.891	Astyanax_mexicanus
ENSLACG00000007784	SMNDC1	100	83.613	ENSBTAG00000000551	SMNDC1	100	83.613	Bos_taurus
ENSLACG00000007784	SMNDC1	100	84.034	ENSCJAG00000018624	SMNDC1	100	84.034	Callithrix_jacchus
ENSLACG00000007784	SMNDC1	100	84.034	ENSCAFG00000010720	SMNDC1	100	84.034	Canis_familiaris
ENSLACG00000007784	SMNDC1	100	84.034	ENSCAFG00020011913	SMNDC1	100	84.034	Canis_lupus_dingo
ENSLACG00000007784	SMNDC1	100	83.613	ENSCHIG00000010604	SMNDC1	100	83.613	Capra_hircus
ENSLACG00000007784	SMNDC1	100	84.034	ENSTSYG00000026454	SMNDC1	100	84.034	Carlito_syrichta
ENSLACG00000007784	SMNDC1	84	80.597	ENSCAPG00000009132	SMNDC1	100	80.597	Cavia_aperea
ENSLACG00000007784	SMNDC1	100	83.613	ENSCPOG00000031666	SMNDC1	100	83.613	Cavia_porcellus
ENSLACG00000007784	SMNDC1	100	84.034	ENSCCAG00000021793	SMNDC1	100	84.034	Cebus_capucinus
ENSLACG00000007784	SMNDC1	100	83.613	ENSCATG00000035910	SMNDC1	100	83.613	Cercocebus_atys
ENSLACG00000007784	SMNDC1	100	83.613	ENSCLAG00000002838	SMNDC1	100	83.613	Chinchilla_lanigera
ENSLACG00000007784	SMNDC1	100	84.034	ENSCSAG00000005169	SMNDC1	100	84.034	Chlorocebus_sabaeus
ENSLACG00000007784	SMNDC1	81	79.793	ENSCHOG00000002936	SMNDC1	100	79.793	Choloepus_hoffmanni
ENSLACG00000007784	SMNDC1	100	84.874	ENSCPBG00000012837	SMNDC1	100	84.874	Chrysemys_picta_bellii
ENSLACG00000007784	SMNDC1	100	66.387	ENSCANG00000036994	-	100	66.387	Colobus_angolensis_palliatus
ENSLACG00000007784	SMNDC1	100	84.034	ENSCANG00000031720	-	100	84.034	Colobus_angolensis_palliatus
ENSLACG00000007784	SMNDC1	100	77.311	ENSCANG00000034620	-	100	77.311	Colobus_angolensis_palliatus
ENSLACG00000007784	SMNDC1	100	84.034	ENSCGRG00001012973	Smndc1	100	84.034	Cricetulus_griseus_chok1gshd
ENSLACG00000007784	SMNDC1	100	84.034	ENSCGRG00000012396	Smndc1	100	84.034	Cricetulus_griseus_crigri
ENSLACG00000007784	SMNDC1	100	76.050	ENSCSEG00000015621	smndc1	100	76.050	Cynoglossus_semilaevis
ENSLACG00000007784	SMNDC1	100	74.790	ENSCVAG00000020432	smndc1	100	74.790	Cyprinodon_variegatus
ENSLACG00000007784	SMNDC1	100	78.992	ENSDARG00000056235	smndc1	100	78.992	Danio_rerio
ENSLACG00000007784	SMNDC1	100	84.034	ENSDNOG00000016387	SMNDC1	83	84.034	Dasypus_novemcinctus
ENSLACG00000007784	SMNDC1	100	84.034	ENSDORG00000023715	Smndc1	100	84.034	Dipodomys_ordii
ENSLACG00000007784	SMNDC1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSLACG00000007784	SMNDC1	100	68.880	ENSEBUG00000010929	smndc1	100	70.370	Eptatretus_burgeri
ENSLACG00000007784	SMNDC1	100	84.034	ENSEASG00005014930	SMNDC1	100	84.034	Equus_asinus_asinus
ENSLACG00000007784	SMNDC1	100	84.034	ENSECAG00000029973	SMNDC1	100	84.034	Equus_caballus
ENSLACG00000007784	SMNDC1	83	62.121	ENSEEUG00000013407	-	100	62.121	Erinaceus_europaeus
ENSLACG00000007784	SMNDC1	100	76.050	ENSELUG00000000227	smndc1	100	76.050	Esox_lucius
ENSLACG00000007784	SMNDC1	100	84.034	ENSFCAG00000027353	SMNDC1	100	84.034	Felis_catus
ENSLACG00000007784	SMNDC1	100	83.193	ENSFALG00000002306	SMNDC1	100	83.193	Ficedula_albicollis
ENSLACG00000007784	SMNDC1	100	84.034	ENSFDAG00000006468	SMNDC1	100	84.034	Fukomys_damarensis
ENSLACG00000007784	SMNDC1	100	75.630	ENSFHEG00000020150	smndc1	100	75.630	Fundulus_heteroclitus
ENSLACG00000007784	SMNDC1	100	78.571	ENSGMOG00000016585	smndc1	100	78.571	Gadus_morhua
ENSLACG00000007784	SMNDC1	100	83.193	ENSGALG00000008561	SMNDC1	100	83.193	Gallus_gallus
ENSLACG00000007784	SMNDC1	100	73.529	ENSGAFG00000011582	smndc1	100	73.529	Gambusia_affinis
ENSLACG00000007784	SMNDC1	100	75.210	ENSGACG00000009468	smndc1	100	75.210	Gasterosteus_aculeatus
ENSLACG00000007784	SMNDC1	100	84.874	ENSGAGG00000024547	SMNDC1	100	84.874	Gopherus_agassizii
ENSLACG00000007784	SMNDC1	100	84.034	ENSGGOG00000010071	SMNDC1	100	84.034	Gorilla_gorilla
ENSLACG00000007784	SMNDC1	100	74.790	ENSHBUG00000017596	smndc1	100	74.790	Haplochromis_burtoni
ENSLACG00000007784	SMNDC1	100	84.034	ENSHGLG00000013390	-	100	84.034	Heterocephalus_glaber_female
ENSLACG00000007784	SMNDC1	100	59.836	ENSHGLG00000001157	-	100	58.197	Heterocephalus_glaber_female
ENSLACG00000007784	SMNDC1	100	84.034	ENSHGLG00100004814	-	100	84.034	Heterocephalus_glaber_male
ENSLACG00000007784	SMNDC1	100	66.803	ENSHGLG00100004278	-	100	66.803	Heterocephalus_glaber_male
ENSLACG00000007784	SMNDC1	100	73.640	ENSHCOG00000000783	smndc1	100	73.640	Hippocampus_comes
ENSLACG00000007784	SMNDC1	100	76.891	ENSIPUG00000004217	smndc1	100	76.891	Ictalurus_punctatus
ENSLACG00000007784	SMNDC1	100	84.034	ENSSTOG00000006088	SMNDC1	100	84.034	Ictidomys_tridecemlineatus
ENSLACG00000007784	SMNDC1	100	83.613	ENSJJAG00000019974	Smndc1	100	83.613	Jaculus_jaculus
ENSLACG00000007784	SMNDC1	100	73.109	ENSKMAG00000020134	smndc1	100	73.109	Kryptolebias_marmoratus
ENSLACG00000007784	SMNDC1	100	76.891	ENSLBEG00000004598	smndc1	100	76.891	Labrus_bergylta
ENSLACG00000007784	SMNDC1	100	84.034	ENSLOCG00000012355	smndc1	100	84.034	Lepisosteus_oculatus
ENSLACG00000007784	SMNDC1	100	83.613	ENSLAFG00000014353	SMNDC1	100	83.613	Loxodonta_africana
ENSLACG00000007784	SMNDC1	100	69.328	ENSMFAG00000038381	-	100	69.328	Macaca_fascicularis
ENSLACG00000007784	SMNDC1	100	84.034	ENSMFAG00000002433	-	100	84.034	Macaca_fascicularis
ENSLACG00000007784	SMNDC1	100	84.034	ENSMMUG00000007775	SMNDC1	100	84.034	Macaca_mulatta
ENSLACG00000007784	SMNDC1	100	69.328	ENSMMUG00000045875	-	100	69.328	Macaca_mulatta
ENSLACG00000007784	SMNDC1	100	73.950	ENSMNEG00000033853	-	100	73.950	Macaca_nemestrina
ENSLACG00000007784	SMNDC1	100	84.034	ENSMNEG00000042963	-	100	84.034	Macaca_nemestrina
ENSLACG00000007784	SMNDC1	100	78.243	ENSMLEG00000040236	SMNDC1	100	77.824	Mandrillus_leucophaeus
ENSLACG00000007784	SMNDC1	89	72.300	ENSMAMG00000018233	smndc1	87	72.300	Mastacembelus_armatus
ENSLACG00000007784	SMNDC1	100	74.790	ENSMZEG00005027510	smndc1	100	74.790	Maylandia_zebra
ENSLACG00000007784	SMNDC1	99	74.790	ENSMGAG00000010777	SMNDC1	100	74.790	Meleagris_gallopavo
ENSLACG00000007784	SMNDC1	100	84.034	ENSMAUG00000012243	-	100	84.034	Mesocricetus_auratus
ENSLACG00000007784	SMNDC1	99	66.667	ENSMAUG00000005459	-	93	68.776	Mesocricetus_auratus
ENSLACG00000007784	SMNDC1	100	83.193	ENSMICG00000027336	-	100	83.193	Microcebus_murinus
ENSLACG00000007784	SMNDC1	100	72.269	ENSMICG00000031640	-	100	72.269	Microcebus_murinus
ENSLACG00000007784	SMNDC1	100	83.613	ENSMOCG00000002458	Smndc1	100	83.613	Microtus_ochrogaster
ENSLACG00000007784	SMNDC1	100	76.471	ENSMMOG00000008856	smndc1	100	76.471	Mola_mola
ENSLACG00000007784	SMNDC1	100	84.454	ENSMODG00000010542	SMNDC1	100	84.454	Monodelphis_domestica
ENSLACG00000007784	SMNDC1	100	75.630	ENSMALG00000017598	smndc1	100	75.630	Monopterus_albus
ENSLACG00000007784	SMNDC1	100	83.613	MGP_CAROLIEiJ_G0023072	Smndc1	100	83.613	Mus_caroli
ENSLACG00000007784	SMNDC1	100	84.034	ENSMUSG00000025024	Smndc1	100	84.034	Mus_musculus
ENSLACG00000007784	SMNDC1	100	84.034	MGP_PahariEiJ_G0014560	Smndc1	100	84.034	Mus_pahari
ENSLACG00000007784	SMNDC1	100	84.034	MGP_SPRETEiJ_G0023993	Smndc1	100	84.034	Mus_spretus
ENSLACG00000007784	SMNDC1	100	84.034	ENSMPUG00000002089	SMNDC1	100	84.034	Mustela_putorius_furo
ENSLACG00000007784	SMNDC1	100	83.613	ENSMLUG00000016007	SMNDC1	100	83.613	Myotis_lucifugus
ENSLACG00000007784	SMNDC1	100	83.613	ENSNGAG00000006833	Smndc1	100	83.613	Nannospalax_galili
ENSLACG00000007784	SMNDC1	100	74.790	ENSNBRG00000017089	smndc1	100	74.790	Neolamprologus_brichardi
ENSLACG00000007784	SMNDC1	100	84.034	ENSNLEG00000015471	SMNDC1	100	84.034	Nomascus_leucogenys
ENSLACG00000007784	SMNDC1	82	56.931	ENSMEUG00000010120	-	99	57.426	Notamacropus_eugenii
ENSLACG00000007784	SMNDC1	100	83.613	ENSOPRG00000015348	SMNDC1	100	83.613	Ochotona_princeps
ENSLACG00000007784	SMNDC1	100	61.765	ENSODEG00000007594	-	100	60.084	Octodon_degus
ENSLACG00000007784	SMNDC1	100	74.790	ENSONIG00000000434	smndc1	100	74.790	Oreochromis_niloticus
ENSLACG00000007784	SMNDC1	100	84.454	ENSOANG00000001598	SMNDC1	100	84.454	Ornithorhynchus_anatinus
ENSLACG00000007784	SMNDC1	100	62.185	ENSOCUG00000012274	-	100	64.286	Oryctolagus_cuniculus
ENSLACG00000007784	SMNDC1	100	84.034	ENSOCUG00000008145	-	100	84.034	Oryctolagus_cuniculus
ENSLACG00000007784	SMNDC1	100	76.471	ENSORLG00000005934	smndc1	95	76.471	Oryzias_latipes
ENSLACG00000007784	SMNDC1	100	76.471	ENSORLG00020008796	smndc1	95	76.471	Oryzias_latipes_hni
ENSLACG00000007784	SMNDC1	100	76.471	ENSORLG00015013666	smndc1	100	76.471	Oryzias_latipes_hsok
ENSLACG00000007784	SMNDC1	100	76.050	ENSOMEG00000007590	smndc1	100	76.050	Oryzias_melastigma
ENSLACG00000007784	SMNDC1	100	83.613	ENSOGAG00000000571	SMNDC1	100	83.613	Otolemur_garnettii
ENSLACG00000007784	SMNDC1	100	83.613	ENSOARG00000009500	SMNDC1	100	83.613	Ovis_aries
ENSLACG00000007784	SMNDC1	100	84.034	ENSPPAG00000027815	SMNDC1	100	84.034	Pan_paniscus
ENSLACG00000007784	SMNDC1	100	84.034	ENSPPRG00000013749	SMNDC1	100	84.034	Panthera_pardus
ENSLACG00000007784	SMNDC1	100	84.034	ENSPTIG00000011451	SMNDC1	100	84.034	Panthera_tigris_altaica
ENSLACG00000007784	SMNDC1	100	84.034	ENSPTRG00000002937	SMNDC1	100	84.034	Pan_troglodytes
ENSLACG00000007784	SMNDC1	100	79.832	ENSPANG00000031346	-	100	79.832	Papio_anubis
ENSLACG00000007784	SMNDC1	100	84.034	ENSPANG00000020805	-	100	84.034	Papio_anubis
ENSLACG00000007784	SMNDC1	100	81.513	ENSPKIG00000017164	smndc1	100	81.513	Paramormyrops_kingsleyae
ENSLACG00000007784	SMNDC1	100	85.294	ENSPSIG00000012257	SMNDC1	100	85.294	Pelodiscus_sinensis
ENSLACG00000007784	SMNDC1	100	75.210	ENSPMGG00000015651	smndc1	100	75.210	Periophthalmus_magnuspinnatus
ENSLACG00000007784	SMNDC1	100	84.034	ENSPEMG00000022058	Smndc1	100	84.034	Peromyscus_maniculatus_bairdii
ENSLACG00000007784	SMNDC1	100	65.432	ENSPMAG00000007705	smndc1	100	65.432	Petromyzon_marinus
ENSLACG00000007784	SMNDC1	97	60.000	ENSPCIG00000009693	-	98	61.062	Phascolarctos_cinereus
ENSLACG00000007784	SMNDC1	100	84.454	ENSPCIG00000018419	SMNDC1	100	84.454	Phascolarctos_cinereus
ENSLACG00000007784	SMNDC1	100	74.790	ENSPFOG00000017113	smndc1	100	74.790	Poecilia_formosa
ENSLACG00000007784	SMNDC1	100	74.790	ENSPLAG00000010372	smndc1	100	74.790	Poecilia_latipinna
ENSLACG00000007784	SMNDC1	100	75.210	ENSPMEG00000012288	smndc1	100	75.210	Poecilia_mexicana
ENSLACG00000007784	SMNDC1	100	75.210	ENSPREG00000012279	smndc1	100	75.210	Poecilia_reticulata
ENSLACG00000007784	SMNDC1	100	84.034	ENSPPYG00000002643	SMNDC1	100	84.034	Pongo_abelii
ENSLACG00000007784	SMNDC1	81	79.793	ENSPCAG00000016183	SMNDC1	100	79.793	Procavia_capensis
ENSLACG00000007784	SMNDC1	100	83.613	ENSPCOG00000024343	SMNDC1	100	83.613	Propithecus_coquereli
ENSLACG00000007784	SMNDC1	100	67.227	ENSPVAG00000004368	SMNDC1	100	67.227	Pteropus_vampyrus
ENSLACG00000007784	SMNDC1	83	72.727	ENSPNYG00000024093	smndc1	86	72.727	Pundamilia_nyererei
ENSLACG00000007784	SMNDC1	100	75.210	ENSPNAG00000025285	smndc1	100	75.210	Pygocentrus_nattereri
ENSLACG00000007784	SMNDC1	100	83.613	ENSRNOG00000014833	Smndc1	100	83.613	Rattus_norvegicus
ENSLACG00000007784	SMNDC1	100	83.613	ENSRBIG00000000224	-	100	83.613	Rhinopithecus_bieti
ENSLACG00000007784	SMNDC1	100	68.908	ENSRBIG00000032452	-	100	68.908	Rhinopithecus_bieti
ENSLACG00000007784	SMNDC1	100	84.034	ENSRROG00000044992	-	100	84.034	Rhinopithecus_roxellana
ENSLACG00000007784	SMNDC1	100	69.328	ENSRROG00000039125	-	100	69.328	Rhinopithecus_roxellana
ENSLACG00000007784	SMNDC1	100	84.034	ENSSBOG00000026789	SMNDC1	100	84.034	Saimiri_boliviensis_boliviensis
ENSLACG00000007784	SMNDC1	100	84.454	ENSSHAG00000015189	SMNDC1	100	84.454	Sarcophilus_harrisii
ENSLACG00000007784	SMNDC1	100	82.353	ENSSFOG00015008311	smndc1	100	82.353	Scleropages_formosus
ENSLACG00000007784	SMNDC1	100	75.210	ENSSMAG00000020118	smndc1	100	75.210	Scophthalmus_maximus
ENSLACG00000007784	SMNDC1	100	77.731	ENSSDUG00000015330	smndc1	100	77.731	Seriola_dumerili
ENSLACG00000007784	SMNDC1	100	77.731	ENSSLDG00000017325	smndc1	100	77.731	Seriola_lalandi_dorsalis
ENSLACG00000007784	SMNDC1	100	83.613	ENSSARG00000006063	SMNDC1	100	83.613	Sorex_araneus
ENSLACG00000007784	SMNDC1	100	83.613	ENSSPUG00000004574	SMNDC1	100	83.613	Sphenodon_punctatus
ENSLACG00000007784	SMNDC1	100	76.050	ENSSPAG00000000338	smndc1	100	76.050	Stegastes_partitus
ENSLACG00000007784	SMNDC1	100	84.034	ENSSSCG00000030507	SMNDC1	100	84.034	Sus_scrofa
ENSLACG00000007784	SMNDC1	100	83.193	ENSTGUG00000010599	SMNDC1	100	83.193	Taeniopygia_guttata
ENSLACG00000007784	SMNDC1	100	73.950	ENSTRUG00000023281	smndc1	100	73.950	Takifugu_rubripes
ENSLACG00000007784	SMNDC1	100	74.370	ENSTNIG00000013331	smndc1	100	74.370	Tetraodon_nigroviridis
ENSLACG00000007784	SMNDC1	100	83.613	ENSTBEG00000014337	SMNDC1	100	83.613	Tupaia_belangeri
ENSLACG00000007784	SMNDC1	100	84.034	ENSUAMG00000008142	SMNDC1	100	84.034	Ursus_americanus
ENSLACG00000007784	SMNDC1	100	84.034	ENSUMAG00000023722	SMNDC1	100	84.034	Ursus_maritimus
ENSLACG00000007784	SMNDC1	83	83.838	ENSVPAG00000003402	SMNDC1	100	83.838	Vicugna_pacos
ENSLACG00000007784	SMNDC1	100	84.034	ENSVVUG00000007820	SMNDC1	100	84.034	Vulpes_vulpes
ENSLACG00000007784	SMNDC1	60	65.493	ENSXETG00000015415	SMNDC1	100	65.493	Xenopus_tropicalis
ENSLACG00000007784	SMNDC1	100	73.529	ENSXCOG00000009159	smndc1	100	73.529	Xiphophorus_couchianus
ENSLACG00000007784	SMNDC1	100	73.529	ENSXMAG00000012755	smndc1	100	73.529	Xiphophorus_maculatus