EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000008061 (Gene tree)
Gene ID: 102354001
Gene Symbol: A1CF
Alias: ACF|ACF64|ACF65|APOBEC1CF|ASP
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 49160 bases
Position: chrJH127781.1:317778-366937
Accession: 102354001
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000009132	DND1_DSRM	PF14709.7	3.4e-27	1	1
ENSLACP00000009132	RRM_1	PF00076.22	2.2e-42	1	3
ENSLACP00000009132	RRM_1	PF00076.22	2.2e-42	2	3
ENSLACP00000009132	RRM_1	PF00076.22	2.2e-42	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000009201	A1CF-201	5311	XM_006005591	ENSLACP00000009132	583 (aa)	XP_006005653	H3AHL1

Gene Model

Click here to download ENSLACG00000008061's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000008061's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000008061	A1CF	53	53.674	ENSLACG00000006547	SYNCRIP	73	45.366
ENSLACG00000008061	A1CF	89	54.389	ENSLACG00000007196	RBM47	82	53.690
ENSLACG00000008061	A1CF	54	54.012	ENSLACG00000003246	HNRNPR	53	51.964
ENSLACG00000008061	A1CF	69	71.096	ENSLACG00000002062	RBM46	75	71.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000008061	A1CF	100	82.203	ENSG00000148584	A1CF	100	91.045	Homo_sapiens
ENSLACG00000008061	A1CF	100	76.007	ENSAPOG00000008259	a1cf	100	76.650	Acanthochromis_polyacanthus
ENSLACG00000008061	A1CF	100	81.208	ENSAMEG00000000523	A1CF	100	81.376	Ailuropoda_melanoleuca
ENSLACG00000008061	A1CF	100	77.190	ENSACIG00000008632	a1cf	100	79.008	Amphilophus_citrinellus
ENSLACG00000008061	A1CF	100	77.537	ENSAOCG00000023744	a1cf	91	89.058	Amphiprion_ocellaris
ENSLACG00000008061	A1CF	100	76.355	ENSAPEG00000009537	a1cf	100	78.146	Amphiprion_percula
ENSLACG00000008061	A1CF	100	78.383	ENSATEG00000013720	a1cf	100	79.734	Anabas_testudineus
ENSLACG00000008061	A1CF	100	83.811	ENSAPLG00000002964	A1CF	100	83.811	Anas_platyrhynchos
ENSLACG00000008061	A1CF	100	82.222	ENSACAG00000015269	A1CF	100	82.222	Anolis_carolinensis
ENSLACG00000008061	A1CF	100	82.203	ENSANAG00000019974	A1CF	100	82.373	Aotus_nancymaae
ENSLACG00000008061	A1CF	100	77.517	ENSACLG00000017428	a1cf	100	79.698	Astatotilapia_calliptera
ENSLACG00000008061	A1CF	100	76.073	ENSAMXG00000018180	a1cf	100	76.073	Astyanax_mexicanus
ENSLACG00000008061	A1CF	100	81.895	ENSBTAG00000021195	A1CF	98	84.615	Bos_taurus
ENSLACG00000008061	A1CF	100	81.438	ENSCJAG00000005045	A1CF	100	81.605	Callithrix_jacchus
ENSLACG00000008061	A1CF	100	80.504	ENSCAFG00000015581	A1CF	100	81.008	Canis_familiaris
ENSLACG00000008061	A1CF	100	80.504	ENSCAFG00020026421	A1CF	98	84.848	Canis_lupus_dingo
ENSLACG00000008061	A1CF	100	80.634	ENSCHIG00000020411	A1CF	100	80.801	Capra_hircus
ENSLACG00000008061	A1CF	94	82.523	ENSTSYG00000001755	A1CF	100	82.883	Carlito_syrichta
ENSLACG00000008061	A1CF	100	76.852	ENSCAPG00000017386	A1CF	100	76.543	Cavia_aperea
ENSLACG00000008061	A1CF	100	81.104	ENSCPOG00000009807	A1CF	100	81.271	Cavia_porcellus
ENSLACG00000008061	A1CF	100	81.742	ENSCCAG00000018168	A1CF	100	81.742	Cebus_capucinus
ENSLACG00000008061	A1CF	100	82.483	ENSCATG00000043715	A1CF	100	82.483	Cercocebus_atys
ENSLACG00000008061	A1CF	100	80.968	ENSCLAG00000010424	A1CF	100	80.968	Chinchilla_lanigera
ENSLACG00000008061	A1CF	100	81.711	ENSCSAG00000007032	A1CF	100	81.711	Chlorocebus_sabaeus
ENSLACG00000008061	A1CF	98	78.438	ENSCHOG00000009089	A1CF	99	78.438	Choloepus_hoffmanni
ENSLACG00000008061	A1CF	100	83.474	ENSCPBG00000026464	A1CF	100	83.474	Chrysemys_picta_bellii
ENSLACG00000008061	A1CF	100	81.376	ENSCANG00000038032	A1CF	100	81.376	Colobus_angolensis_palliatus
ENSLACG00000008061	A1CF	100	80.634	ENSCGRG00001017413	A1cf	100	81.135	Cricetulus_griseus_chok1gshd
ENSLACG00000008061	A1CF	100	80.301	ENSCGRG00000017332	A1cf	100	80.968	Cricetulus_griseus_crigri
ENSLACG00000008061	A1CF	100	75.413	ENSCSEG00000002361	a1cf	100	76.733	Cynoglossus_semilaevis
ENSLACG00000008061	A1CF	100	77.558	ENSCVAG00000010520	a1cf	100	79.900	Cyprinodon_variegatus
ENSLACG00000008061	A1CF	100	83.447	ENSDARG00000002968	a1cf	100	84.812	Danio_rerio
ENSLACG00000008061	A1CF	100	80.301	ENSDNOG00000002829	A1CF	100	80.634	Dasypus_novemcinctus
ENSLACG00000008061	A1CF	82	87.319	ENSETEG00000012527	A1CF	81	87.319	Echinops_telfairi
ENSLACG00000008061	A1CF	100	80.865	ENSEASG00005012924	A1CF	100	81.032	Equus_asinus_asinus
ENSLACG00000008061	A1CF	100	80.532	ENSECAG00000010424	A1CF	100	80.699	Equus_caballus
ENSLACG00000008061	A1CF	77	74.279	ENSEEUG00000000013	A1CF	98	74.279	Erinaceus_europaeus
ENSLACG00000008061	A1CF	100	84.317	ENSELUG00000003159	a1cf	100	84.317	Esox_lucius
ENSLACG00000008061	A1CF	100	81.973	ENSFCAG00000011179	A1CF	100	82.143	Felis_catus
ENSLACG00000008061	A1CF	100	84.786	ENSFALG00000013183	A1CF	100	84.786	Ficedula_albicollis
ENSLACG00000008061	A1CF	100	82.403	ENSFDAG00000019371	A1CF	100	82.403	Fukomys_damarensis
ENSLACG00000008061	A1CF	100	71.617	ENSFHEG00000019652	a1cf	96	85.156	Fundulus_heteroclitus
ENSLACG00000008061	A1CF	100	72.727	ENSGMOG00000018943	a1cf	100	72.937	Gadus_morhua
ENSLACG00000008061	A1CF	95	82.562	ENSGALG00000003765	A1CF	97	82.562	Gallus_gallus
ENSLACG00000008061	A1CF	100	72.093	ENSGAFG00000014868	a1cf	100	73.256	Gambusia_affinis
ENSLACG00000008061	A1CF	100	74.507	ENSGACG00000010241	a1cf	100	75.164	Gasterosteus_aculeatus
ENSLACG00000008061	A1CF	94	82.679	ENSGAGG00000016508	A1CF	97	82.679	Gopherus_agassizii
ENSLACG00000008061	A1CF	100	81.271	ENSGGOG00000009670	A1CF	100	81.438	Gorilla_gorilla
ENSLACG00000008061	A1CF	100	77.521	ENSHBUG00000021959	a1cf	100	79.174	Haplochromis_burtoni
ENSLACG00000008061	A1CF	100	80.467	ENSHGLG00000008955	A1CF	100	80.968	Heterocephalus_glaber_female
ENSLACG00000008061	A1CF	100	79.800	ENSHGLG00100000518	A1CF	100	80.301	Heterocephalus_glaber_male
ENSLACG00000008061	A1CF	100	68.679	ENSHCOG00000017669	a1cf	100	71.987	Hippocampus_comes
ENSLACG00000008061	A1CF	90	85.261	ENSIPUG00000010367	a1cf	99	83.784	Ictalurus_punctatus
ENSLACG00000008061	A1CF	100	77.073	ENSKMAG00000006568	a1cf	100	77.886	Kryptolebias_marmoratus
ENSLACG00000008061	A1CF	99	77.100	ENSLBEG00000020994	a1cf	98	78.583	Labrus_bergylta
ENSLACG00000008061	A1CF	100	84.317	ENSLOCG00000006302	a1cf	100	84.654	Lepisosteus_oculatus
ENSLACG00000008061	A1CF	100	82.137	ENSLAFG00000015462	A1CF	100	82.638	Loxodonta_africana
ENSLACG00000008061	A1CF	100	82.823	ENSMFAG00000035948	A1CF	100	82.823	Macaca_fascicularis
ENSLACG00000008061	A1CF	100	82.823	ENSMMUG00000007077	A1CF	100	82.823	Macaca_mulatta
ENSLACG00000008061	A1CF	100	82.823	ENSMNEG00000031454	A1CF	100	82.823	Macaca_nemestrina
ENSLACG00000008061	A1CF	100	81.376	ENSMLEG00000037223	A1CF	100	81.376	Mandrillus_leucophaeus
ENSLACG00000008061	A1CF	100	76.119	ENSMAMG00000010402	a1cf	100	78.146	Mastacembelus_armatus
ENSLACG00000008061	A1CF	100	78.057	ENSMZEG00005013245	a1cf	100	79.062	Maylandia_zebra
ENSLACG00000008061	A1CF	100	82.828	ENSMGAG00000001507	A1CF	100	82.828	Meleagris_gallopavo
ENSLACG00000008061	A1CF	100	80.301	ENSMAUG00000007422	A1cf	100	80.801	Mesocricetus_auratus
ENSLACG00000008061	A1CF	100	81.481	ENSMICG00000003377	A1CF	100	81.818	Microcebus_murinus
ENSLACG00000008061	A1CF	100	81.469	ENSMOCG00000021536	A1cf	100	81.970	Microtus_ochrogaster
ENSLACG00000008061	A1CF	100	70.420	ENSMMOG00000009422	a1cf	100	72.269	Mola_mola
ENSLACG00000008061	A1CF	90	84.981	ENSMODG00000016478	A1CF	99	82.967	Monodelphis_domestica
ENSLACG00000008061	A1CF	100	74.320	ENSMALG00000012992	a1cf	100	74.320	Monopterus_albus
ENSLACG00000008061	A1CF	100	80.711	MGP_CAROLIEiJ_G0022873	A1cf	100	81.049	Mus_caroli
ENSLACG00000008061	A1CF	100	80.711	ENSMUSG00000052595	A1cf	99	86.089	Mus_musculus
ENSLACG00000008061	A1CF	100	80.372	MGP_PahariEiJ_G0014366	A1cf	100	80.372	Mus_pahari
ENSLACG00000008061	A1CF	100	80.372	MGP_SPRETEiJ_G0023792	A1cf	100	80.711	Mus_spretus
ENSLACG00000008061	A1CF	100	75.000	ENSMPUG00000016971	A1CF	100	75.503	Mustela_putorius_furo
ENSLACG00000008061	A1CF	100	81.135	ENSMLUG00000016071	A1CF	100	81.302	Myotis_lucifugus
ENSLACG00000008061	A1CF	100	80.968	ENSNGAG00000015136	A1cf	100	81.302	Nannospalax_galili
ENSLACG00000008061	A1CF	100	77.355	ENSNBRG00000001712	a1cf	100	79.008	Neolamprologus_brichardi
ENSLACG00000008061	A1CF	100	81.469	ENSNLEG00000012028	A1CF	100	81.636	Nomascus_leucogenys
ENSLACG00000008061	A1CF	94	82.821	ENSMEUG00000015909	A1CF	100	82.821	Notamacropus_eugenii
ENSLACG00000008061	A1CF	89	72.727	ENSOPRG00000010667	A1CF	99	70.631	Ochotona_princeps
ENSLACG00000008061	A1CF	100	78.017	ENSONIG00000019105	a1cf	100	79.008	Oreochromis_niloticus
ENSLACG00000008061	A1CF	79	85.065	ENSOANG00000007360	A1CF	99	85.065	Ornithorhynchus_anatinus
ENSLACG00000008061	A1CF	100	81.419	ENSOCUG00000011587	A1CF	100	82.095	Oryctolagus_cuniculus
ENSLACG00000008061	A1CF	100	76.656	ENSORLG00000013342	a1cf	100	76.656	Oryzias_latipes
ENSLACG00000008061	A1CF	100	76.923	ENSORLG00020000586	a1cf	100	77.578	Oryzias_latipes_hni
ENSLACG00000008061	A1CF	100	76.923	ENSORLG00015018569	a1cf	100	77.578	Oryzias_latipes_hsok
ENSLACG00000008061	A1CF	100	78.441	ENSOMEG00000013531	a1cf	100	78.441	Oryzias_melastigma
ENSLACG00000008061	A1CF	100	80.872	ENSOGAG00000012884	A1CF	100	81.208	Otolemur_garnettii
ENSLACG00000008061	A1CF	100	80.634	ENSOARG00000013695	A1CF	100	80.634	Ovis_aries
ENSLACG00000008061	A1CF	97	79.828	ENSPPAG00000028115	A1CF	99	85.455	Pan_paniscus
ENSLACG00000008061	A1CF	100	80.872	ENSPPRG00000012180	A1CF	100	81.040	Panthera_pardus
ENSLACG00000008061	A1CF	100	80.872	ENSPTIG00000021223	A1CF	100	81.040	Panthera_tigris_altaica
ENSLACG00000008061	A1CF	100	82.542	ENSPTRG00000002508	A1CF	100	82.712	Pan_troglodytes
ENSLACG00000008061	A1CF	100	82.823	ENSPANG00000021988	A1CF	100	82.823	Papio_anubis
ENSLACG00000008061	A1CF	100	82.245	ENSPKIG00000025176	a1cf	100	82.245	Paramormyrops_kingsleyae
ENSLACG00000008061	A1CF	100	84.957	ENSPSIG00000010318	A1CF	100	84.957	Pelodiscus_sinensis
ENSLACG00000008061	A1CF	98	71.330	ENSPMGG00000013359	a1cf	99	72.366	Periophthalmus_magnuspinnatus
ENSLACG00000008061	A1CF	100	81.469	ENSPEMG00000015021	A1cf	100	81.469	Peromyscus_maniculatus_bairdii
ENSLACG00000008061	A1CF	100	83.106	ENSPCIG00000002175	A1CF	100	83.106	Phascolarctos_cinereus
ENSLACG00000008061	A1CF	100	75.733	ENSPFOG00000007437	-	100	77.524	Poecilia_formosa
ENSLACG00000008061	A1CF	100	75.896	ENSPFOG00000006683	a1cf	100	77.687	Poecilia_formosa
ENSLACG00000008061	A1CF	100	76.733	ENSPLAG00000000026	a1cf	100	78.548	Poecilia_latipinna
ENSLACG00000008061	A1CF	100	76.733	ENSPLAG00000001210	-	100	78.548	Poecilia_latipinna
ENSLACG00000008061	A1CF	100	68.954	ENSPMEG00000015529	-	100	70.752	Poecilia_mexicana
ENSLACG00000008061	A1CF	100	69.868	ENSPMEG00000000921	a1cf	100	71.689	Poecilia_mexicana
ENSLACG00000008061	A1CF	100	75.896	ENSPREG00000016298	a1cf	100	77.850	Poecilia_reticulata
ENSLACG00000008061	A1CF	100	82.741	ENSPPYG00000002819	A1CF	100	82.910	Pongo_abelii
ENSLACG00000008061	A1CF	79	64.957	ENSPCAG00000006463	A1CF	79	64.957	Procavia_capensis
ENSLACG00000008061	A1CF	100	80.500	ENSPCOG00000024172	A1CF	100	80.833	Propithecus_coquereli
ENSLACG00000008061	A1CF	100	76.672	ENSPNYG00000017944	a1cf	100	78.303	Pundamilia_nyererei
ENSLACG00000008061	A1CF	100	83.389	ENSPNAG00000007704	a1cf	100	83.557	Pygocentrus_nattereri
ENSLACG00000008061	A1CF	100	81.049	ENSRNOG00000033195	A1cf	100	81.387	Rattus_norvegicus
ENSLACG00000008061	A1CF	100	75.753	ENSRBIG00000042892	A1CF	100	80.754	Rhinopithecus_bieti
ENSLACG00000008061	A1CF	100	81.711	ENSRROG00000041398	A1CF	100	81.711	Rhinopithecus_roxellana
ENSLACG00000008061	A1CF	100	81.469	ENSSBOG00000021930	A1CF	100	81.854	Saimiri_boliviensis_boliviensis
ENSLACG00000008061	A1CF	100	82.653	ENSSHAG00000005096	A1CF	100	82.653	Sarcophilus_harrisii
ENSLACG00000008061	A1CF	100	83.054	ENSSFOG00015011774	a1cf	100	83.389	Scleropages_formosus
ENSLACG00000008061	A1CF	100	75.570	ENSSMAG00000013271	a1cf	100	75.896	Scophthalmus_maximus
ENSLACG00000008061	A1CF	100	76.606	ENSSDUG00000013930	a1cf	100	77.778	Seriola_dumerili
ENSLACG00000008061	A1CF	100	71.761	ENSSLDG00000004290	a1cf	100	73.244	Seriola_lalandi_dorsalis
ENSLACG00000008061	A1CF	95	72.776	ENSSARG00000005940	A1CF	96	73.310	Sorex_araneus
ENSLACG00000008061	A1CF	95	81.915	ENSSPUG00000006797	A1CF	95	81.915	Sphenodon_punctatus
ENSLACG00000008061	A1CF	100	81.302	ENSSSCG00000010431	A1CF	100	81.469	Sus_scrofa
ENSLACG00000008061	A1CF	100	82.529	ENSTGUG00000005090	A1CF	100	82.529	Taeniopygia_guttata
ENSLACG00000008061	A1CF	100	76.672	ENSTRUG00000001982	a1cf	100	76.672	Takifugu_rubripes
ENSLACG00000008061	A1CF	100	76.748	ENSTNIG00000003580	a1cf	100	76.748	Tetraodon_nigroviridis
ENSLACG00000008061	A1CF	97	76.091	ENSTTRG00000013190	A1CF	95	76.440	Tursiops_truncatus
ENSLACG00000008061	A1CF	100	82.143	ENSUAMG00000020065	A1CF	100	82.143	Ursus_americanus
ENSLACG00000008061	A1CF	100	80.976	ENSUMAG00000011162	A1CF	100	81.145	Ursus_maritimus
ENSLACG00000008061	A1CF	87	79.110	ENSVPAG00000006130	A1CF	86	79.110	Vicugna_pacos
ENSLACG00000008061	A1CF	100	81.942	ENSVVUG00000002504	A1CF	100	82.283	Vulpes_vulpes
ENSLACG00000008061	A1CF	100	78.716	ENSXETG00000006611	a1cf	100	78.716	Xenopus_tropicalis
ENSLACG00000008061	A1CF	100	78.405	ENSXCOG00000003302	a1cf	100	79.402	Xiphophorus_couchianus
ENSLACG00000008061	A1CF	100	77.377	ENSXMAG00000016703	a1cf	100	78.361	Xiphophorus_maculatus