EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000008130 (Gene tree)
Gene ID: 102348677
Gene Symbol: GPATCH1
Alias: ECGP|FLJ10206|FLJ38686|GPATC1
Full Name: G-patch domain containing 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 48907 bases
Position: chrJH127514.1:322409-371315
Accession: 102348677
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000009209	DUF1604	PF07713.13	2.3e-35	1	1
ENSLACP00000009210	G-patch	PF01585.23	1.9e-08	1	1
ENSLACP00000009209	G-patch	PF01585.23	2.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000009281	GPATCH1-202	5492	XM_006003623	ENSLACP00000009210	852 (aa)	-	H3AHT9
ENSLACT00000009280	GPATCH1-201	2730	-	ENSLACP00000009209	910 (aa)	-	H3AHT8

Gene Model

Click here to download ENSLACG00000008130's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000008130's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000008130	GPATCH1	90	58.950	ENSG00000076650	GPATCH1	88	58.732	Homo_sapiens
ENSLACG00000008130	GPATCH1	90	58.802	ENSAMEG00000015575	GPATCH1	88	58.683	Ailuropoda_melanoleuca
ENSLACG00000008130	GPATCH1	79	72.956	ENSAOCG00000006668	gpatch1	72	72.956	Amphiprion_ocellaris
ENSLACG00000008130	GPATCH1	80	55.214	ENSAPEG00000000026	gpatch1	89	52.109	Amphiprion_percula
ENSLACG00000008130	GPATCH1	90	51.624	ENSATEG00000014494	gpatch1	88	52.595	Anabas_testudineus
ENSLACG00000008130	GPATCH1	93	57.623	ENSAPLG00000007584	GPATCH1	97	57.078	Anas_platyrhynchos
ENSLACG00000008130	GPATCH1	90	58.633	ENSANAG00000027002	GPATCH1	88	58.554	Aotus_nancymaae
ENSLACG00000008130	GPATCH1	80	55.512	ENSACLG00000024740	gpatch1	77	55.512	Astatotilapia_calliptera
ENSLACG00000008130	GPATCH1	94	53.905	ENSAMXG00000020177	gpatch1	97	53.653	Astyanax_mexicanus
ENSLACG00000008130	GPATCH1	90	59.184	ENSBTAG00000000721	GPATCH1	88	58.894	Bos_taurus
ENSLACG00000008130	GPATCH1	90	58.513	ENSCJAG00000000684	GPATCH1	88	58.434	Callithrix_jacchus
ENSLACG00000008130	GPATCH1	90	59.472	ENSCAFG00000007457	GPATCH1	74	59.233	Canis_familiaris
ENSLACG00000008130	GPATCH1	90	59.472	ENSCAFG00020019731	GPATCH1	88	59.353	Canis_lupus_dingo
ENSLACG00000008130	GPATCH1	90	58.922	ENSCHIG00000019626	GPATCH1	89	60.049	Capra_hircus
ENSLACG00000008130	GPATCH1	89	55.676	ENSCAPG00000008827	GPATCH1	89	56.204	Cavia_aperea
ENSLACG00000008130	GPATCH1	89	56.851	ENSCPOG00000024477	GPATCH1	89	56.218	Cavia_porcellus
ENSLACG00000008130	GPATCH1	90	57.914	ENSCCAG00000024676	GPATCH1	88	58.313	Cebus_capucinus
ENSLACG00000008130	GPATCH1	90	59.308	ENSCATG00000043637	GPATCH1	88	58.950	Cercocebus_atys
ENSLACG00000008130	GPATCH1	91	57.482	ENSCLAG00000003395	-	91	57.403	Chinchilla_lanigera
ENSLACG00000008130	GPATCH1	90	58.115	ENSCSAG00000004743	GPATCH1	88	57.863	Chlorocebus_sabaeus
ENSLACG00000008130	GPATCH1	89	52.455	ENSCHOG00000012865	GPATCH1	89	52.704	Choloepus_hoffmanni
ENSLACG00000008130	GPATCH1	88	60.105	ENSCPBG00000000666	GPATCH1	92	66.529	Chrysemys_picta_bellii
ENSLACG00000008130	GPATCH1	67	38.278	ENSCING00000012518	-	82	35.128	Ciona_intestinalis
ENSLACG00000008130	GPATCH1	84	59.845	ENSCANG00000012540	GPATCH1	87	66.298	Colobus_angolensis_palliatus
ENSLACG00000008130	GPATCH1	99	56.148	ENSCGRG00001016736	Gpatch1	91	58.434	Cricetulus_griseus_chok1gshd
ENSLACG00000008130	GPATCH1	71	71.508	ENSCGRG00000005069	Gpatch1	73	71.930	Cricetulus_griseus_crigri
ENSLACG00000008130	GPATCH1	94	39.653	ENSCSEG00000019456	-	90	50.939	Cynoglossus_semilaevis
ENSLACG00000008130	GPATCH1	89	52.941	ENSDARG00000033418	gpatch1	89	53.281	Danio_rerio
ENSLACG00000008130	GPATCH1	89	58.937	ENSDNOG00000005291	GPATCH1	90	57.551	Dasypus_novemcinctus
ENSLACG00000008130	GPATCH1	92	53.998	ENSDORG00000012546	Gpatch1	91	54.762	Dipodomys_ordii
ENSLACG00000008130	GPATCH1	81	33.546	FBgn0036386	CG8833	64	34.598	Drosophila_melanogaster
ENSLACG00000008130	GPATCH1	90	54.688	ENSETEG00000003626	GPATCH1	89	54.306	Echinops_telfairi
ENSLACG00000008130	GPATCH1	94	36.075	ENSEBUG00000011286	gpatch1	80	37.795	Eptatretus_burgeri
ENSLACG00000008130	GPATCH1	89	58.745	ENSEASG00005021162	GPATCH1	89	58.583	Equus_asinus_asinus
ENSLACG00000008130	GPATCH1	90	58.802	ENSECAG00000022743	GPATCH1	85	58.493	Equus_caballus
ENSLACG00000008130	GPATCH1	71	62.500	ENSEEUG00000012925	GPATCH1	69	62.500	Erinaceus_europaeus
ENSLACG00000008130	GPATCH1	99	48.371	ENSELUG00000018195	gpatch1	89	51.018	Esox_lucius
ENSLACG00000008130	GPATCH1	90	58.243	ENSFCAG00000014917	GPATCH1	87	58.002	Felis_catus
ENSLACG00000008130	GPATCH1	92	59.698	ENSFALG00000007821	GPATCH1	87	60.689	Ficedula_albicollis
ENSLACG00000008130	GPATCH1	90	58.617	ENSFDAG00000003871	GPATCH1	91	58.981	Fukomys_damarensis
ENSLACG00000008130	GPATCH1	79	48.138	ENSGMOG00000003830	gpatch1	92	46.389	Gadus_morhua
ENSLACG00000008130	GPATCH1	92	59.181	ENSGALG00000004839	GPATCH1	90	60.169	Gallus_gallus
ENSLACG00000008130	GPATCH1	89	51.497	ENSGACG00000017544	gpatch1	91	51.270	Gasterosteus_aculeatus
ENSLACG00000008130	GPATCH1	90	61.743	ENSGAGG00000010067	GPATCH1	87	60.901	Gopherus_agassizii
ENSLACG00000008130	GPATCH1	90	59.042	ENSGGOG00000010862	GPATCH1	90	58.824	Gorilla_gorilla
ENSLACG00000008130	GPATCH1	80	55.995	ENSHBUG00000023462	gpatch1	88	53.179	Haplochromis_burtoni
ENSLACG00000008130	GPATCH1	90	58.596	ENSHGLG00000009334	GPATCH1	91	57.401	Heterocephalus_glaber_female
ENSLACG00000008130	GPATCH1	90	58.475	ENSHGLG00100018074	GPATCH1	90	57.177	Heterocephalus_glaber_male
ENSLACG00000008130	GPATCH1	93	54.860	ENSIPUG00000014977	gpatch1	87	55.426	Ictalurus_punctatus
ENSLACG00000008130	GPATCH1	90	58.164	ENSSTOG00000003720	GPATCH1	89	57.976	Ictidomys_tridecemlineatus
ENSLACG00000008130	GPATCH1	90	58.333	ENSJJAG00000023765	Gpatch1	88	58.454	Jaculus_jaculus
ENSLACG00000008130	GPATCH1	92	52.535	ENSKMAG00000017950	gpatch1	89	51.564	Kryptolebias_marmoratus
ENSLACG00000008130	GPATCH1	91	50.395	ENSLBEG00000026527	gpatch1	87	51.515	Labrus_bergylta
ENSLACG00000008130	GPATCH1	80	59.299	ENSLOCG00000001800	gpatch1	88	55.344	Lepisosteus_oculatus
ENSLACG00000008130	GPATCH1	90	59.096	ENSLAFG00000013589	GPATCH1	88	58.859	Loxodonta_africana
ENSLACG00000008130	GPATCH1	90	59.379	ENSMFAG00000034418	GPATCH1	93	59.135	Macaca_fascicularis
ENSLACG00000008130	GPATCH1	90	59.476	ENSMMUG00000011790	GPATCH1	89	59.233	Macaca_mulatta
ENSLACG00000008130	GPATCH1	90	59.308	ENSMNEG00000045084	GPATCH1	90	59.064	Macaca_nemestrina
ENSLACG00000008130	GPATCH1	83	55.801	ENSMLEG00000043840	GPATCH1	84	55.220	Mandrillus_leucophaeus
ENSLACG00000008130	GPATCH1	80	55.643	ENSMZEG00005001926	gpatch1	77	55.643	Maylandia_zebra
ENSLACG00000008130	GPATCH1	90	60.507	ENSMGAG00000005775	GPATCH1	87	60.507	Meleagris_gallopavo
ENSLACG00000008130	GPATCH1	89	53.293	ENSMICG00000004829	GPATCH1	89	53.174	Microcebus_murinus
ENSLACG00000008130	GPATCH1	90	57.725	ENSMOCG00000000174	Gpatch1	89	57.313	Microtus_ochrogaster
ENSLACG00000008130	GPATCH1	82	49.810	ENSMMOG00000002140	gpatch1	85	50.587	Mola_mola
ENSLACG00000008130	GPATCH1	91	56.557	ENSMODG00000012226	GPATCH1	87	56.872	Monodelphis_domestica
ENSLACG00000008130	GPATCH1	100	49.213	ENSMALG00000014386	gpatch1	90	51.373	Monopterus_albus
ENSLACG00000008130	GPATCH1	99	57.190	ENSMUSG00000063808	Gpatch1	71	82.857	Mus_musculus
ENSLACG00000008130	GPATCH1	99	57.174	MGP_PahariEiJ_G0012816	Gpatch1	71	82.857	Mus_pahari
ENSLACG00000008130	GPATCH1	99	56.972	MGP_SPRETEiJ_G0030681	Gpatch1	71	82.857	Mus_spretus
ENSLACG00000008130	GPATCH1	90	58.971	ENSMPUG00000007658	GPATCH1	88	58.922	Mustela_putorius_furo
ENSLACG00000008130	GPATCH1	90	59.184	ENSMLUG00000012161	GPATCH1	88	58.873	Myotis_lucifugus
ENSLACG00000008130	GPATCH1	90	56.611	ENSNGAG00000012455	Gpatch1	88	58.333	Nannospalax_galili
ENSLACG00000008130	GPATCH1	90	57.494	ENSNLEG00000007659	GPATCH1	88	59.014	Nomascus_leucogenys
ENSLACG00000008130	GPATCH1	72	57.327	ENSMEUG00000015174	GPATCH1	68	58.360	Notamacropus_eugenii
ENSLACG00000008130	GPATCH1	90	56.747	ENSODEG00000007103	GPATCH1	88	57.091	Octodon_degus
ENSLACG00000008130	GPATCH1	80	57.011	ENSONIG00000003302	gpatch1	92	52.981	Oreochromis_niloticus
ENSLACG00000008130	GPATCH1	99	58.054	ENSOANG00000012732	GPATCH1	79	64.033	Ornithorhynchus_anatinus
ENSLACG00000008130	GPATCH1	90	58.363	ENSOCUG00000015905	GPATCH1	88	59.443	Oryctolagus_cuniculus
ENSLACG00000008130	GPATCH1	90	51.896	ENSORLG00000018706	gpatch1	86	51.909	Oryzias_latipes
ENSLACG00000008130	GPATCH1	90	50.769	ENSOMEG00000022688	gpatch1	88	51.479	Oryzias_melastigma
ENSLACG00000008130	GPATCH1	79	60.846	ENSOGAG00000004016	GPATCH1	92	61.216	Otolemur_garnettii
ENSLACG00000008130	GPATCH1	90	58.922	ENSOARG00000004365	GPATCH1	88	59.856	Ovis_aries
ENSLACG00000008130	GPATCH1	90	58.831	ENSPPAG00000020990	GPATCH1	88	58.944	Pan_paniscus
ENSLACG00000008130	GPATCH1	90	58.153	ENSPPRG00000017245	GPATCH1	88	57.914	Panthera_pardus
ENSLACG00000008130	GPATCH1	90	59.113	ENSPTIG00000019649	GPATCH1	88	58.873	Panthera_tigris_altaica
ENSLACG00000008130	GPATCH1	90	58.950	ENSPTRG00000010803	GPATCH1	88	58.944	Pan_troglodytes
ENSLACG00000008130	GPATCH1	90	58.831	ENSPANG00000012374	GPATCH1	92	58.703	Papio_anubis
ENSLACG00000008130	GPATCH1	84	55.500	ENSPKIG00000020745	gpatch1	77	56.684	Paramormyrops_kingsleyae
ENSLACG00000008130	GPATCH1	89	62.728	ENSPSIG00000013433	GPATCH1	87	62.652	Pelodiscus_sinensis
ENSLACG00000008130	GPATCH1	90	58.363	ENSPEMG00000000636	Gpatch1	88	58.724	Peromyscus_maniculatus_bairdii
ENSLACG00000008130	GPATCH1	90	57.399	ENSPCIG00000021003	GPATCH1	94	57.109	Phascolarctos_cinereus
ENSLACG00000008130	GPATCH1	69	49.845	ENSPREG00000008264	gpatch1	94	45.455	Poecilia_reticulata
ENSLACG00000008130	GPATCH1	90	54.982	ENSPPYG00000009824	GPATCH1	88	56.903	Pongo_abelii
ENSLACG00000008130	GPATCH1	77	72.247	ENSPCAG00000005931	GPATCH1	76	65.292	Procavia_capensis
ENSLACG00000008130	GPATCH1	93	55.582	ENSPCOG00000009674	GPATCH1	93	56.659	Propithecus_coquereli
ENSLACG00000008130	GPATCH1	74	62.115	ENSPVAG00000017767	GPATCH1	75	61.000	Pteropus_vampyrus
ENSLACG00000008130	GPATCH1	80	56.217	ENSPNYG00000018189	gpatch1	86	55.952	Pundamilia_nyererei
ENSLACG00000008130	GPATCH1	89	54.368	ENSPNAG00000013187	gpatch1	88	53.118	Pygocentrus_nattereri
ENSLACG00000008130	GPATCH1	99	57.642	ENSRNOG00000011584	Gpatch1	88	59.541	Rattus_norvegicus
ENSLACG00000008130	GPATCH1	87	57.293	ENSRBIG00000034723	GPATCH1	84	56.693	Rhinopithecus_bieti
ENSLACG00000008130	GPATCH1	90	59.064	ENSRROG00000024428	GPATCH1	88	58.254	Rhinopithecus_roxellana
ENSLACG00000008130	GPATCH1	90	58.732	ENSSBOG00000034650	GPATCH1	88	58.313	Saimiri_boliviensis_boliviensis
ENSLACG00000008130	GPATCH1	91	56.604	ENSSHAG00000016016	GPATCH1	88	55.889	Sarcophilus_harrisii
ENSLACG00000008130	GPATCH1	80	57.067	ENSSFOG00015011535	gpatch1	86	54.923	Scleropages_formosus
ENSLACG00000008130	GPATCH1	99	56.044	ENSSMAG00000002883	gpatch1	91	48.840	Scophthalmus_maximus
ENSLACG00000008130	GPATCH1	80	53.032	ENSSDUG00000007444	gpatch1	87	51.027	Seriola_dumerili
ENSLACG00000008130	GPATCH1	80	52.185	ENSSLDG00000002856	gpatch1	86	52.881	Seriola_lalandi_dorsalis
ENSLACG00000008130	GPATCH1	68	65.120	ENSSARG00000004108	GPATCH1	67	65.064	Sorex_araneus
ENSLACG00000008130	GPATCH1	90	58.944	ENSSSCG00000002865	GPATCH1	91	58.802	Sus_scrofa
ENSLACG00000008130	GPATCH1	90	61.259	ENSTGUG00000009401	GPATCH1	89	61.131	Taeniopygia_guttata
ENSLACG00000008130	GPATCH1	80	52.646	ENSTRUG00000005785	-	87	50.605	Takifugu_rubripes
ENSLACG00000008130	GPATCH1	80	52.646	ENSTRUG00000025081	gpatch1	87	50.605	Takifugu_rubripes
ENSLACG00000008130	GPATCH1	80	53.405	ENSTNIG00000002554	gpatch1	94	53.405	Tetraodon_nigroviridis
ENSLACG00000008130	GPATCH1	55	82.692	ENSTBEG00000007750	-	65	86.364	Tupaia_belangeri
ENSLACG00000008130	GPATCH1	90	54.459	ENSTTRG00000012221	GPATCH1	88	54.167	Tursiops_truncatus
ENSLACG00000008130	GPATCH1	92	58.235	ENSUMAG00000014645	GPATCH1	92	62.553	Ursus_maritimus
ENSLACG00000008130	GPATCH1	77	75.510	ENSVPAG00000010313	GPATCH1	82	75.484	Vicugna_pacos
ENSLACG00000008130	GPATCH1	90	59.472	ENSVVUG00000016572	GPATCH1	88	59.353	Vulpes_vulpes
ENSLACG00000008130	GPATCH1	99	49.306	ENSXETG00000018276	gpatch1	94	54.072	Xenopus_tropicalis