EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000008307 (Gene tree)
Gene ID: 102366306
Gene Symbol: XRN2
Alias: -
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 111654 bases
Position: chrJH128232.1:333843-445496
Accession: 102366306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000009417	XRN_N	PF03159.18	4.6e-94	1	1
ENSLACP00000022797	XRN_N	PF03159.18	5.3e-94	1	1
ENSLACP00000009418	XRN_N	PF03159.18	5.5e-94	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000025651	XRN2-202	2899	XM_006007991	ENSLACP00000022797	907 (aa)	XP_006008053	M3XJ91
ENSLACT00000009489	XRN2-201	2475	-	ENSLACP00000009417	825 (aa)	-	H3AIE6
ENSLACT00000009490	XRN2-203	4575	XM_006007990	ENSLACP00000009418	921 (aa)	XP_006008052	H3AIE7

Gene Model

Click here to download ENSLACG00000008307's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03008	Ribosome biogenesis in eukaryotes	KEGG
lcm03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000008307's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000008307	XRN2	99	79.264	ENSG00000088930	XRN2	94	76.752	Homo_sapiens
ENSLACG00000008307	XRN2	97	75.495	ENSAPOG00000009818	xrn2	92	71.320	Acanthochromis_polyacanthus
ENSLACG00000008307	XRN2	99	79.877	ENSAMEG00000012581	XRN2	94	77.308	Ailuropoda_melanoleuca
ENSLACG00000008307	XRN2	97	72.963	ENSACIG00000015047	xrn2	92	74.803	Amphilophus_citrinellus
ENSLACG00000008307	XRN2	98	75.646	ENSAOCG00000023632	xrn2	92	71.630	Amphiprion_ocellaris
ENSLACG00000008307	XRN2	98	75.523	ENSAPEG00000014871	xrn2	92	71.678	Amphiprion_percula
ENSLACG00000008307	XRN2	98	76.103	ENSATEG00000001273	xrn2	94	72.846	Anabas_testudineus
ENSLACG00000008307	XRN2	97	80.299	ENSAPLG00000013869	XRN2	96	76.575	Anas_platyrhynchos
ENSLACG00000008307	XRN2	97	82.022	ENSACAG00000005565	XRN2	94	77.017	Anolis_carolinensis
ENSLACG00000008307	XRN2	99	79.509	ENSANAG00000020126	XRN2	94	76.863	Aotus_nancymaae
ENSLACG00000008307	XRN2	97	75.402	ENSACLG00000010522	xrn2	77	98.667	Astatotilapia_calliptera
ENSLACG00000008307	XRN2	97	76.478	ENSAMXG00000018301	xrn2	94	71.337	Astyanax_mexicanus
ENSLACG00000008307	XRN2	99	79.387	ENSBTAG00000011304	XRN2	96	76.835	Bos_taurus
ENSLACG00000008307	XRN2	97	53.430	WBGene00006964	xrn-2	91	50.877	Caenorhabditis_elegans
ENSLACG00000008307	XRN2	99	79.509	ENSCJAG00000005611	XRN2	94	77.197	Callithrix_jacchus
ENSLACG00000008307	XRN2	99	79.877	ENSCAFG00000005185	XRN2	94	77.308	Canis_familiaris
ENSLACG00000008307	XRN2	99	79.877	ENSCAFG00020027479	XRN2	94	77.308	Canis_lupus_dingo
ENSLACG00000008307	XRN2	99	79.141	ENSCHIG00000006921	XRN2	94	76.243	Capra_hircus
ENSLACG00000008307	XRN2	99	78.993	ENSTSYG00000008315	XRN2	94	76.503	Carlito_syrichta
ENSLACG00000008307	XRN2	96	69.899	ENSCAPG00000010773	XRN2	95	65.095	Cavia_aperea
ENSLACG00000008307	XRN2	99	79.509	ENSCPOG00000009407	XRN2	94	77.086	Cavia_porcellus
ENSLACG00000008307	XRN2	99	79.387	ENSCATG00000040350	XRN2	97	75.490	Cercocebus_atys
ENSLACG00000008307	XRN2	99	79.509	ENSCLAG00000013419	XRN2	94	77.086	Chinchilla_lanigera
ENSLACG00000008307	XRN2	99	79.387	ENSCSAG00000011094	XRN2	94	76.863	Chlorocebus_sabaeus
ENSLACG00000008307	XRN2	70	91.351	ENSCHOG00000013404	XRN2	63	91.351	Choloepus_hoffmanni
ENSLACG00000008307	XRN2	99	81.005	ENSCPBG00000023533	XRN2	96	78.060	Chrysemys_picta_bellii
ENSLACG00000008307	XRN2	97	59.780	ENSCING00000022336	-	97	60.197	Ciona_intestinalis
ENSLACG00000008307	XRN2	88	68.116	ENSCSAVG00000011217	-	93	69.821	Ciona_savignyi
ENSLACG00000008307	XRN2	99	79.387	ENSCANG00000040240	XRN2	94	76.863	Colobus_angolensis_palliatus
ENSLACG00000008307	XRN2	99	78.624	ENSCGRG00001010676	Xrn2	96	76.726	Cricetulus_griseus_chok1gshd
ENSLACG00000008307	XRN2	98	78.589	ENSCGRG00000006378	Xrn2	96	76.000	Cricetulus_griseus_crigri
ENSLACG00000008307	XRN2	61	70.200	ENSCSEG00000005628	xrn2	97	71.800	Cynoglossus_semilaevis
ENSLACG00000008307	XRN2	97	74.261	ENSCVAG00000018999	xrn2	95	78.082	Cyprinodon_variegatus
ENSLACG00000008307	XRN2	97	75.896	ENSDARG00000101900	xrn2	93	77.282	Danio_rerio
ENSLACG00000008307	XRN2	99	79.509	ENSDNOG00000001895	XRN2	94	77.086	Dasypus_novemcinctus
ENSLACG00000008307	XRN2	99	77.914	ENSDORG00000005434	Xrn2	93	75.415	Dipodomys_ordii
ENSLACG00000008307	XRN2	97	56.064	FBgn0031868	Rat1	94	52.009	Drosophila_melanogaster
ENSLACG00000008307	XRN2	88	82.338	ENSETEG00000001740	XRN2	87	82.338	Echinops_telfairi
ENSLACG00000008307	XRN2	95	71.283	ENSEBUG00000016136	xrn2	100	70.849	Eptatretus_burgeri
ENSLACG00000008307	XRN2	99	79.264	ENSEASG00005002484	XRN2	94	76.529	Equus_asinus_asinus
ENSLACG00000008307	XRN2	99	79.387	ENSECAG00000018988	XRN2	94	75.602	Equus_caballus
ENSLACG00000008307	XRN2	74	72.801	ENSEEUG00000009265	XRN2	64	72.757	Erinaceus_europaeus
ENSLACG00000008307	XRN2	98	77.435	ENSELUG00000000552	xrn2	93	72.816	Esox_lucius
ENSLACG00000008307	XRN2	99	79.755	ENSFCAG00000007970	XRN2	94	77.197	Felis_catus
ENSLACG00000008307	XRN2	97	79.975	ENSFALG00000004508	XRN2	93	75.835	Ficedula_albicollis
ENSLACG00000008307	XRN2	99	79.264	ENSFDAG00000016311	XRN2	94	76.863	Fukomys_damarensis
ENSLACG00000008307	XRN2	60	70.833	ENSFHEG00000013039	xrn2	95	71.150	Fundulus_heteroclitus
ENSLACG00000008307	XRN2	97	72.195	ENSGMOG00000013436	xrn2	98	72.503	Gadus_morhua
ENSLACG00000008307	XRN2	97	79.503	ENSGALG00000008372	XRN2	94	75.634	Gallus_gallus
ENSLACG00000008307	XRN2	97	76.108	ENSGAFG00000014284	xrn2	95	75.682	Gambusia_affinis
ENSLACG00000008307	XRN2	98	74.321	ENSGACG00000011870	xrn2	97	74.321	Gasterosteus_aculeatus
ENSLACG00000008307	XRN2	98	81.751	ENSGAGG00000004884	XRN2	94	78.170	Gopherus_agassizii
ENSLACG00000008307	XRN2	99	79.387	ENSGGOG00000013738	XRN2	94	76.863	Gorilla_gorilla
ENSLACG00000008307	XRN2	61	74.951	ENSHBUG00000005077	xrn2	77	98.667	Haplochromis_burtoni
ENSLACG00000008307	XRN2	99	79.167	ENSHGLG00000014831	XRN2	94	75.862	Heterocephalus_glaber_female
ENSLACG00000008307	XRN2	99	79.167	ENSHGLG00100013130	XRN2	94	75.862	Heterocephalus_glaber_male
ENSLACG00000008307	XRN2	98	74.969	ENSHCOG00000011994	xrn2	91	72.249	Hippocampus_comes
ENSLACG00000008307	XRN2	97	74.631	ENSIPUG00000006639	xrn2	94	70.130	Ictalurus_punctatus
ENSLACG00000008307	XRN2	99	79.509	ENSSTOG00000000589	XRN2	94	76.881	Ictidomys_tridecemlineatus
ENSLACG00000008307	XRN2	99	79.534	ENSJJAG00000022128	Xrn2	94	76.863	Jaculus_jaculus
ENSLACG00000008307	XRN2	61	78.600	ENSLBEG00000010041	xrn2	97	78.600	Labrus_bergylta
ENSLACG00000008307	XRN2	98	75.709	ENSLOCG00000016874	xrn2	93	78.082	Lepisosteus_oculatus
ENSLACG00000008307	XRN2	99	79.141	ENSLAFG00000014624	XRN2	94	76.752	Loxodonta_africana
ENSLACG00000008307	XRN2	99	79.387	ENSMFAG00000038122	XRN2	94	76.863	Macaca_fascicularis
ENSLACG00000008307	XRN2	99	79.387	ENSMMUG00000011405	XRN2	94	76.863	Macaca_mulatta
ENSLACG00000008307	XRN2	99	79.264	ENSMNEG00000040626	XRN2	94	76.752	Macaca_nemestrina
ENSLACG00000008307	XRN2	99	79.264	ENSMLEG00000041897	XRN2	94	76.752	Mandrillus_leucophaeus
ENSLACG00000008307	XRN2	98	75.990	ENSMAMG00000008633	xrn2	93	72.319	Mastacembelus_armatus
ENSLACG00000008307	XRN2	98	77.027	ENSMZEG00005022362	xrn2	93	76.831	Maylandia_zebra
ENSLACG00000008307	XRN2	97	79.752	ENSMGAG00000003196	XRN2	93	75.604	Meleagris_gallopavo
ENSLACG00000008307	XRN2	99	78.870	ENSMAUG00000021842	Xrn2	94	76.503	Mesocricetus_auratus
ENSLACG00000008307	XRN2	97	80.373	ENSMICG00000008126	XRN2	94	76.752	Microcebus_murinus
ENSLACG00000008307	XRN2	99	78.282	ENSMOCG00000012588	Xrn2	94	76.307	Microtus_ochrogaster
ENSLACG00000008307	XRN2	98	75.613	ENSMMOG00000017576	xrn2	95	73.793	Mola_mola
ENSLACG00000008307	XRN2	99	80.613	ENSMODG00000006163	XRN2	94	77.716	Monodelphis_domestica
ENSLACG00000008307	XRN2	97	76.296	ENSMALG00000011355	xrn2	98	73.257	Monopterus_albus
ENSLACG00000008307	XRN2	99	79.264	MGP_CAROLIEiJ_G0024400	Xrn2	93	76.744	Mus_caroli
ENSLACG00000008307	XRN2	99	79.141	ENSMUSG00000027433	Xrn2	93	76.633	Mus_musculus
ENSLACG00000008307	XRN2	97	80.000	MGP_PahariEiJ_G0025843	Xrn2	94	76.464	Mus_pahari
ENSLACG00000008307	XRN2	99	79.141	MGP_SPRETEiJ_G0025318	Xrn2	88	84.426	Mus_spretus
ENSLACG00000008307	XRN2	99	78.365	ENSMPUG00000001198	XRN2	88	75.817	Mustela_putorius_furo
ENSLACG00000008307	XRN2	99	79.853	ENSMLUG00000001536	XRN2	94	77.171	Myotis_lucifugus
ENSLACG00000008307	XRN2	99	79.264	ENSNGAG00000018138	Xrn2	94	76.863	Nannospalax_galili
ENSLACG00000008307	XRN2	97	77.599	ENSNBRG00000008062	xrn2	77	98.667	Neolamprologus_brichardi
ENSLACG00000008307	XRN2	99	79.264	ENSNLEG00000009991	XRN2	94	76.752	Nomascus_leucogenys
ENSLACG00000008307	XRN2	64	91.111	ENSMEUG00000008622	-	63	91.111	Notamacropus_eugenii
ENSLACG00000008307	XRN2	74	73.158	ENSOPRG00000001397	-	73	73.158	Ochotona_princeps
ENSLACG00000008307	XRN2	99	79.387	ENSODEG00000010745	-	94	76.974	Octodon_degus
ENSLACG00000008307	XRN2	99	74.419	ENSODEG00000000860	-	96	70.470	Octodon_degus
ENSLACG00000008307	XRN2	98	77.531	ENSONIG00000018720	xrn2	93	73.702	Oreochromis_niloticus
ENSLACG00000008307	XRN2	99	80.147	ENSOANG00000015673	XRN2	94	77.544	Ornithorhynchus_anatinus
ENSLACG00000008307	XRN2	99	79.755	ENSOCUG00000013468	XRN2	94	77.086	Oryctolagus_cuniculus
ENSLACG00000008307	XRN2	97	75.586	ENSORLG00000017213	xrn2	95	74.707	Oryzias_latipes
ENSLACG00000008307	XRN2	97	75.586	ENSORLG00020001824	xrn2	94	72.421	Oryzias_latipes_hni
ENSLACG00000008307	XRN2	97	75.092	ENSORLG00015019747	xrn2	94	72.035	Oryzias_latipes_hsok
ENSLACG00000008307	XRN2	99	74.484	ENSOMEG00000019820	xrn2	93	71.957	Oryzias_melastigma
ENSLACG00000008307	XRN2	97	80.497	ENSOGAG00000001068	XRN2	94	76.940	Otolemur_garnettii
ENSLACG00000008307	XRN2	97	80.375	ENSOARG00000004443	XRN2	96	76.243	Ovis_aries
ENSLACG00000008307	XRN2	99	79.387	ENSPPAG00000033549	XRN2	94	76.863	Pan_paniscus
ENSLACG00000008307	XRN2	99	79.755	ENSPPRG00000008732	XRN2	94	77.197	Panthera_pardus
ENSLACG00000008307	XRN2	97	81.000	ENSPTIG00000015683	XRN2	94	77.197	Panthera_tigris_altaica
ENSLACG00000008307	XRN2	99	79.387	ENSPTRG00000013308	XRN2	94	76.863	Pan_troglodytes
ENSLACG00000008307	XRN2	99	79.387	ENSPANG00000018088	XRN2	94	76.863	Papio_anubis
ENSLACG00000008307	XRN2	97	76.296	ENSPKIG00000016889	xrn2	93	72.149	Paramormyrops_kingsleyae
ENSLACG00000008307	XRN2	93	82.536	ENSPSIG00000014666	XRN2	99	83.679	Pelodiscus_sinensis
ENSLACG00000008307	XRN2	97	79.627	ENSPEMG00000000111	Xrn2	94	76.529	Peromyscus_maniculatus_bairdii
ENSLACG00000008307	XRN2	98	75.275	ENSPFOG00000004182	xrn2	93	71.778	Poecilia_formosa
ENSLACG00000008307	XRN2	97	75.832	ENSPLAG00000007351	xrn2	93	75.208	Poecilia_latipinna
ENSLACG00000008307	XRN2	93	75.933	ENSPMEG00000011798	xrn2	95	71.638	Poecilia_mexicana
ENSLACG00000008307	XRN2	98	75.643	ENSPREG00000012452	xrn2	96	73.624	Poecilia_reticulata
ENSLACG00000008307	XRN2	99	79.264	ENSPPYG00000010755	XRN2	94	76.327	Pongo_abelii
ENSLACG00000008307	XRN2	99	73.961	ENSPCAG00000011191	XRN2	94	71.713	Procavia_capensis
ENSLACG00000008307	XRN2	97	72.886	ENSPCOG00000016468	XRN2	93	69.912	Propithecus_coquereli
ENSLACG00000008307	XRN2	90	74.112	ENSPVAG00000004596	XRN2	86	68.550	Pteropus_vampyrus
ENSLACG00000008307	XRN2	98	75.061	ENSPNYG00000001765	xrn2	93	74.910	Pundamilia_nyererei
ENSLACG00000008307	XRN2	97	75.400	ENSPNAG00000010956	xrn2	94	70.455	Pygocentrus_nattereri
ENSLACG00000008307	XRN2	99	78.896	ENSRNOG00000011785	Xrn2	94	76.974	Rattus_norvegicus
ENSLACG00000008307	XRN2	99	79.264	ENSRBIG00000036193	XRN2	97	81.602	Rhinopithecus_bieti
ENSLACG00000008307	XRN2	99	79.387	ENSRROG00000044400	XRN2	85	76.863	Rhinopithecus_roxellana
ENSLACG00000008307	XRN2	72	53.889	YOR048C	RAT1	55	53.889	Saccharomyces_cerevisiae
ENSLACG00000008307	XRN2	99	79.755	ENSSBOG00000021014	XRN2	94	77.086	Saimiri_boliviensis_boliviensis
ENSLACG00000008307	XRN2	97	77.586	ENSSFOG00015001091	xrn2	94	72.905	Scleropages_formosus
ENSLACG00000008307	XRN2	98	74.539	ENSSMAG00000007834	xrn2	92	70.238	Scophthalmus_maximus
ENSLACG00000008307	XRN2	97	75.307	ENSSDUG00000012802	xrn2	96	72.875	Seriola_dumerili
ENSLACG00000008307	XRN2	97	76.837	ENSSLDG00000021273	xrn2	95	75.149	Seriola_lalandi_dorsalis
ENSLACG00000008307	XRN2	66	81.081	ENSSARG00000005859	-	64	81.081	Sorex_araneus
ENSLACG00000008307	XRN2	98	77.531	ENSSPUG00000005485	XRN2	94	72.786	Sphenodon_punctatus
ENSLACG00000008307	XRN2	98	75.892	ENSSPAG00000016027	xrn2	92	71.739	Stegastes_partitus
ENSLACG00000008307	XRN2	99	78.528	ENSSSCG00000007109	XRN2	94	76.085	Sus_scrofa
ENSLACG00000008307	XRN2	97	78.563	ENSTGUG00000007535	XRN2	93	74.778	Taeniopygia_guttata
ENSLACG00000008307	XRN2	98	75.495	ENSTRUG00000015489	xrn2	91	71.858	Takifugu_rubripes
ENSLACG00000008307	XRN2	97	75.528	ENSTNIG00000010712	xrn2	86	74.667	Tetraodon_nigroviridis
ENSLACG00000008307	XRN2	99	78.650	ENSTBEG00000004119	XRN2	94	76.529	Tupaia_belangeri
ENSLACG00000008307	XRN2	90	81.530	ENSTTRG00000009087	XRN2	87	83.022	Tursiops_truncatus
ENSLACG00000008307	XRN2	99	80.123	ENSUAMG00000024634	XRN2	92	87.273	Ursus_americanus
ENSLACG00000008307	XRN2	98	80.221	ENSUMAG00000004012	XRN2	91	77.419	Ursus_maritimus
ENSLACG00000008307	XRN2	82	86.084	ENSVPAG00000010694	XRN2	82	86.084	Vicugna_pacos
ENSLACG00000008307	XRN2	99	79.877	ENSVVUG00000012178	XRN2	94	77.308	Vulpes_vulpes
ENSLACG00000008307	XRN2	99	78.064	ENSXETG00000023501	xrn2	95	73.422	Xenopus_tropicalis
ENSLACG00000008307	XRN2	98	75.031	ENSXMAG00000000242	xrn2	88	78.571	Xiphophorus_maculatus