EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSLACG00000008308 (Gene tree)
Gene ID
102367080
Gene Symbol
CPSF3
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Latimeria_chalumnae
Status
putative
Strand
Plus strand
Length
45614 bases
Position
chrJH128047.1:333903-379516
Accession
102367080
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSLACP00000009419CPSF73-100_CPF11718.84.1e-5511
ENSLACP00000009420CPSF73-100_CPF11718.87.6e-5511
ENSLACP00000009420Beta-CaspPF10996.89e-3411
ENSLACP00000009419Beta-CaspPF10996.81.1e-3311
ENSLACP00000009419Lactamase_BPF00753.274e-1911
ENSLACP00000009420Lactamase_BPF00753.274.6e-1911
ENSLACP00000009420RMMBLPF07521.124.4e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSLACT00000009492CPSF3-2022070-ENSLACP00000009420689 (aa)-H3AIE9
ENSLACT00000009491CPSF3-2012939XM_006007221ENSLACP00000009419642 (aa)XP_006007283H3AIE8
Gene Model
Click here to download ENSLACG00000008308's gene model file
Pathways
Pathway IDPathway NameSource
lcm03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000008308's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSLACG00000008308CPSF35537.396ENSLACG00000018802INTS116037.808
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSLACG00000008308CPSF39883.947ENSG00000119203CPSF3100100.000Homo_sapiens
ENSLACG00000008308CPSF39980.000ENSAPOG00000022087cpsf39980.000Acanthochromis_polyacanthus
ENSLACG00000008308CPSF37488.802ENSAPOG00000012241CPSF39188.802Acanthochromis_polyacanthus
ENSLACG00000008308CPSF39883.800ENSAMEG00000008493CPSF39983.800Ailuropoda_melanoleuca
ENSLACG00000008308CPSF39177.021ENSACIG00000009846cpsf39977.021Amphilophus_citrinellus
ENSLACG00000008308CPSF39178.130ENSACIG00000023663CPSF310072.648Amphilophus_citrinellus
ENSLACG00000008308CPSF310080.608ENSAOCG00000010077CPSF310080.608Amphiprion_ocellaris
ENSLACG00000008308CPSF39980.145ENSAOCG00000022056cpsf39684.833Amphiprion_ocellaris
ENSLACG00000008308CPSF310080.608ENSAPEG00000021167CPSF310080.608Amphiprion_percula
ENSLACG00000008308CPSF39980.145ENSAPEG00000019526cpsf39981.307Amphiprion_percula
ENSLACG00000008308CPSF39979.681ENSATEG00000003959cpsf39979.681Anabas_testudineus
ENSLACG00000008308CPSF310076.700ENSATEG00000014525CPSF310076.700Anabas_testudineus
ENSLACG00000008308CPSF39882.206ENSAPLG00000006941CPSF39982.206Anas_platyrhynchos
ENSLACG00000008308CPSF39282.334ENSACAG00000001759CPSF39982.334Anolis_carolinensis
ENSLACG00000008308CPSF39881.089ENSANAG00000031254CPSF39981.089Aotus_nancymaae
ENSLACG00000008308CPSF39680.030ENSACLG00000014484cpsf39980.030Astatotilapia_calliptera
ENSLACG00000008308CPSF39178.447ENSACLG00000018846CPSF39978.447Astatotilapia_calliptera
ENSLACG00000008308CPSF310081.476ENSAMXG00000004786cpsf310081.476Astyanax_mexicanus
ENSLACG00000008308CPSF39883.800ENSBTAG00000019735CPSF39983.800Bos_taurus
ENSLACG00000008308CPSF39054.331WBGene00013460cpsf-38954.331Caenorhabditis_elegans
ENSLACG00000008308CPSF39883.947ENSCJAG00000006276CPSF39983.947Callithrix_jacchus
ENSLACG00000008308CPSF39883.800ENSCAFG00000003375CPSF39583.800Canis_familiaris
ENSLACG00000008308CPSF38985.877ENSCAFG00020026799CPSF39985.877Canis_lupus_dingo
ENSLACG00000008308CPSF39883.800ENSCHIG00000013973CPSF39983.800Capra_hircus
ENSLACG00000008308CPSF39883.800ENSTSYG00000002967CPSF39983.800Carlito_syrichta
ENSLACG00000008308CPSF39683.008ENSCAPG00000013851CPSF39983.008Cavia_aperea
ENSLACG00000008308CPSF39883.211ENSCPOG00000011299CPSF39983.211Cavia_porcellus
ENSLACG00000008308CPSF39883.947ENSCCAG00000036730CPSF39983.947Cebus_capucinus
ENSLACG00000008308CPSF39882.353ENSCATG00000014770CPSF39988.062Cercocebus_atys
ENSLACG00000008308CPSF39883.063ENSCLAG00000002727CPSF39983.063Chinchilla_lanigera
ENSLACG00000008308CPSF39880.220ENSCSAG00000007125CPSF39980.220Chlorocebus_sabaeus
ENSLACG00000008308CPSF376100.000ENSCHOG00000000180CPSF37098.008Choloepus_hoffmanni
ENSLACG00000008308CPSF39983.164ENSCPBG00000014074CPSF39983.164Chrysemys_picta_bellii
ENSLACG00000008308CPSF39863.743ENSCING00000007214-9863.743Ciona_intestinalis
ENSLACG00000008308CPSF39873.139ENSCANG00000034435CPSF39973.139Colobus_angolensis_palliatus
ENSLACG00000008308CPSF39883.358ENSCGRG00001013134Cpsf39983.358Cricetulus_griseus_chok1gshd
ENSLACG00000008308CPSF39883.358ENSCGRG00000018319Cpsf39983.358Cricetulus_griseus_crigri
ENSLACG00000008308CPSF310079.624ENSCSEG00000002021CPSF310079.624Cynoglossus_semilaevis
ENSLACG00000008308CPSF310080.753ENSCVAG00000015067CPSF310080.753Cyprinodon_variegatus
ENSLACG00000008308CPSF310081.187ENSDARG00000027649cpsf310081.187Danio_rerio
ENSLACG00000008308CPSF39883.382ENSDNOG00000008940CPSF39583.382Dasypus_novemcinctus
ENSLACG00000008308CPSF39484.722ENSDORG00000014263Cpsf39984.722Dipodomys_ordii
ENSLACG00000008308CPSF39961.426FBgn0261065Cpsf739961.426Drosophila_melanogaster
ENSLACG00000008308CPSF39472.068ENSETEG00000003893CPSF39972.068Echinops_telfairi
ENSLACG00000008308CPSF39971.108ENSEBUG00000009018cpsf39971.529Eptatretus_burgeri
ENSLACG00000008308CPSF39883.800ENSEASG00005003970CPSF39983.800Equus_asinus_asinus
ENSLACG00000008308CPSF39883.800ENSECAG00000019911CPSF39687.352Equus_caballus
ENSLACG00000008308CPSF39874.374ENSEEUG00000015422CPSF39974.374Erinaceus_europaeus
ENSLACG00000008308CPSF39981.739ENSELUG00000013775cpsf39981.739Esox_lucius
ENSLACG00000008308CPSF39883.800ENSFCAG00000007852CPSF39983.800Felis_catus
ENSLACG00000008308CPSF39383.101ENSFALG00000006572CPSF39983.101Ficedula_albicollis
ENSLACG00000008308CPSF39882.916ENSFDAG00000006317CPSF39982.916Fukomys_damarensis
ENSLACG00000008308CPSF35661.081ENSFHEG00000012186CPSF310061.081Fundulus_heteroclitus
ENSLACG00000008308CPSF39979.130ENSFHEG00000014774cpsf39979.130Fundulus_heteroclitus
ENSLACG00000008308CPSF39979.681ENSGMOG00000003157cpsf39979.681Gadus_morhua
ENSLACG00000008308CPSF39983.261ENSGALG00000016424CPSF39983.261Gallus_gallus
ENSLACG00000008308CPSF310081.331ENSGAFG00000008016CPSF310081.331Gambusia_affinis
ENSLACG00000008308CPSF39175.318ENSGAFG00000019449cpsf39969.956Gambusia_affinis
ENSLACG00000008308CPSF36776.660ENSGAGG00000025583CPSF39376.660Gopherus_agassizii
ENSLACG00000008308CPSF39881.700ENSGGOG00000001757CPSF39982.780Gorilla_gorilla
ENSLACG00000008308CPSF39979.855ENSHBUG00000001188cpsf39979.855Haplochromis_burtoni
ENSLACG00000008308CPSF35968.719ENSHBUG00000014332CPSF310068.719Haplochromis_burtoni
ENSLACG00000008308CPSF39883.358ENSHGLG00000000666CPSF39883.358Heterocephalus_glaber_female
ENSLACG00000008308CPSF39883.358ENSHGLG00100007765CPSF39883.358Heterocephalus_glaber_male
ENSLACG00000008308CPSF39979.536ENSHCOG00000007251cpsf39979.536Hippocampus_comes
ENSLACG00000008308CPSF39979.826ENSHCOG00000015957CPSF39979.826Hippocampus_comes
ENSLACG00000008308CPSF310080.174ENSIPUG00000023488cpsf310080.174Ictalurus_punctatus
ENSLACG00000008308CPSF39883.652ENSSTOG00000004476CPSF39983.652Ictidomys_tridecemlineatus
ENSLACG00000008308CPSF39883.211ENSJJAG00000023415Cpsf39983.211Jaculus_jaculus
ENSLACG00000008308CPSF39979.420ENSKMAG00000002806cpsf39979.420Kryptolebias_marmoratus
ENSLACG00000008308CPSF310080.463ENSKMAG00000007317CPSF310080.463Kryptolebias_marmoratus
ENSLACG00000008308CPSF35470.053ENSLBEG00000015018-9970.053Labrus_bergylta
ENSLACG00000008308CPSF39974.638ENSLBEG00000020569cpsf39674.638Labrus_bergylta
ENSLACG00000008308CPSF39581.915ENSLBEG00000013492CPSF39981.915Labrus_bergylta
ENSLACG00000008308CPSF310081.466ENSLOCG00000016823cpsf310081.466Lepisosteus_oculatus
ENSLACG00000008308CPSF39882.448ENSLAFG00000009467CPSF39982.448Loxodonta_africana
ENSLACG00000008308CPSF39883.947ENSMFAG00000001339CPSF39983.947Macaca_fascicularis
ENSLACG00000008308CPSF39383.256ENSMMUG00000018038CPSF39983.256Macaca_mulatta
ENSLACG00000008308CPSF39097.600ENSMNEG00000039447CPSF39997.600Macaca_nemestrina
ENSLACG00000008308CPSF39883.800ENSMLEG00000026825CPSF39983.800Mandrillus_leucophaeus
ENSLACG00000008308CPSF39177.409ENSMAMG00000008835CPSF310072.150Mastacembelus_armatus
ENSLACG00000008308CPSF39978.810ENSMAMG00000003076cpsf39978.810Mastacembelus_armatus
ENSLACG00000008308CPSF39979.855ENSMZEG00005014358cpsf39979.855Maylandia_zebra
ENSLACG00000008308CPSF310081.187ENSMZEG00005006258CPSF310081.187Maylandia_zebra
ENSLACG00000008308CPSF39683.308ENSMGAG00000013995CPSF39983.308Meleagris_gallopavo
ENSLACG00000008308CPSF35470.588ENSMAUG00000000166Cpsf39970.588Mesocricetus_auratus
ENSLACG00000008308CPSF39879.234ENSMICG00000002363CPSF39979.234Microcebus_murinus
ENSLACG00000008308CPSF39880.707ENSMOCG00000020067Cpsf39980.707Microtus_ochrogaster
ENSLACG00000008308CPSF39376.316ENSMMOG00000018212CPSF39876.316Mola_mola
ENSLACG00000008308CPSF310054.033ENSMMOG00000011923CPSF38577.857Mola_mola
ENSLACG00000008308CPSF39882.678ENSMODG00000014703CPSF39982.678Monodelphis_domestica
ENSLACG00000008308CPSF39276.755ENSMALG00000011474CPSF310076.755Monopterus_albus
ENSLACG00000008308CPSF39979.826ENSMALG00000016416cpsf39979.826Monopterus_albus
ENSLACG00000008308CPSF39883.652MGP_CAROLIEiJ_G0017640Cpsf39983.652Mus_caroli
ENSLACG00000008308CPSF39883.652ENSMUSG00000054309Cpsf39697.881Mus_musculus
ENSLACG00000008308CPSF39883.505MGP_PahariEiJ_G0029397Cpsf39983.505Mus_pahari
ENSLACG00000008308CPSF39883.652MGP_SPRETEiJ_G0018481Cpsf39983.652Mus_spretus
ENSLACG00000008308CPSF39883.676ENSMPUG00000013213CPSF39983.676Mustela_putorius_furo
ENSLACG00000008308CPSF39883.529ENSMLUG00000010636CPSF39983.529Myotis_lucifugus
ENSLACG00000008308CPSF39883.505ENSNGAG00000019836Cpsf39983.505Nannospalax_galili
ENSLACG00000008308CPSF39178.447ENSNBRG00000010525CPSF39978.447Neolamprologus_brichardi
ENSLACG00000008308CPSF39980.145ENSNBRG00000004770cpsf39980.145Neolamprologus_brichardi
ENSLACG00000008308CPSF39883.947ENSNLEG00000013359CPSF39983.947Nomascus_leucogenys
ENSLACG00000008308CPSF39061.290ENSMEUG00000013117-9953.019Notamacropus_eugenii
ENSLACG00000008308CPSF39874.853ENSOPRG00000008902CPSF39974.853Ochotona_princeps
ENSLACG00000008308CPSF39883.211ENSODEG00000003129CPSF39983.211Octodon_degus
ENSLACG00000008308CPSF39980.290ENSONIG00000018812cpsf39980.290Oreochromis_niloticus
ENSLACG00000008308CPSF38179.893ENSOANG00000008577CPSF39979.893Ornithorhynchus_anatinus
ENSLACG00000008308CPSF39883.652ENSOCUG00000003728CPSF39983.652Oryctolagus_cuniculus
ENSLACG00000008308CPSF39978.261ENSORLG00000018854cpsf39978.261Oryzias_latipes
ENSLACG00000008308CPSF39978.406ENSORLG00020013331cpsf39978.406Oryzias_latipes_hni
ENSLACG00000008308CPSF39978.261ENSORLG00015011017cpsf39978.261Oryzias_latipes_hsok
ENSLACG00000008308CPSF39978.261ENSOMEG00000010647cpsf39678.261Oryzias_melastigma
ENSLACG00000008308CPSF39879.087ENSOGAG00000001680CPSF39979.087Otolemur_garnettii
ENSLACG00000008308CPSF39883.800ENSOARG00000015073CPSF39983.800Ovis_aries
ENSLACG00000008308CPSF39883.800ENSPPAG00000042457CPSF39983.800Pan_paniscus
ENSLACG00000008308CPSF39883.505ENSPPRG00000016790CPSF39983.505Panthera_pardus
ENSLACG00000008308CPSF39883.628ENSPTIG00000003920CPSF39983.628Panthera_tigris_altaica
ENSLACG00000008308CPSF39883.800ENSPTRG00000011638CPSF39983.800Pan_troglodytes
ENSLACG00000008308CPSF39884.094ENSPANG00000016798CPSF39984.094Papio_anubis
ENSLACG00000008308CPSF310082.200ENSPKIG00000023646cpsf310082.200Paramormyrops_kingsleyae
ENSLACG00000008308CPSF39882.353ENSPSIG00000016144CPSF39982.353Pelodiscus_sinensis
ENSLACG00000008308CPSF38080.797ENSPMGG00000006141-9580.797Periophthalmus_magnuspinnatus
ENSLACG00000008308CPSF35968.227ENSPMGG00000015311CPSF310068.227Periophthalmus_magnuspinnatus
ENSLACG00000008308CPSF39884.094ENSPEMG00000017668Cpsf39984.094Peromyscus_maniculatus_bairdii
ENSLACG00000008308CPSF37883.919ENSPMAG00000004841cpsf39983.919Petromyzon_marinus
ENSLACG00000008308CPSF39688.312ENSPCIG00000009823CPSF39888.312Phascolarctos_cinereus
ENSLACG00000008308CPSF310081.042ENSPFOG00000010418-10081.042Poecilia_formosa
ENSLACG00000008308CPSF39978.665ENSPFOG00000015922cpsf39978.665Poecilia_formosa
ENSLACG00000008308CPSF39978.665ENSPLAG00000000882cpsf39978.665Poecilia_latipinna
ENSLACG00000008308CPSF35970.197ENSPLAG00000021300-10070.197Poecilia_latipinna
ENSLACG00000008308CPSF39978.665ENSPMEG00000018309cpsf39978.665Poecilia_mexicana
ENSLACG00000008308CPSF310075.398ENSPREG00000004482CPSF310075.398Poecilia_reticulata
ENSLACG00000008308CPSF39175.955ENSPREG00000014875cpsf39970.537Poecilia_reticulata
ENSLACG00000008308CPSF39879.676ENSPPYG00000012666CPSF39979.676Pongo_abelii
ENSLACG00000008308CPSF38566.478ENSPCAG00000015042CPSF39066.478Procavia_capensis
ENSLACG00000008308CPSF38786.054ENSPCOG00000023016CPSF39786.054Propithecus_coquereli
ENSLACG00000008308CPSF39883.676ENSPVAG00000005324CPSF39983.676Pteropus_vampyrus
ENSLACG00000008308CPSF37883.764ENSPNYG00000021047CPSF39083.764Pundamilia_nyererei
ENSLACG00000008308CPSF39979.855ENSPNYG00000004405cpsf39979.855Pundamilia_nyererei
ENSLACG00000008308CPSF310080.608ENSPNAG00000023060cpsf310080.608Pygocentrus_nattereri
ENSLACG00000008308CPSF39983.554ENSRNOG00000052418Cpsf39983.554Rattus_norvegicus
ENSLACG00000008308CPSF39878.792ENSRBIG00000041615CPSF39979.535Rhinopithecus_bieti
ENSLACG00000008308CPSF39883.800ENSRROG00000033792CPSF39983.800Rhinopithecus_roxellana
ENSLACG00000008308CPSF39539.216YLR277CYSH19739.216Saccharomyces_cerevisiae
ENSLACG00000008308CPSF39680.120ENSSBOG00000027263CPSF39780.120Saimiri_boliviensis_boliviensis
ENSLACG00000008308CPSF39883.800ENSSHAG00000007024CPSF39983.800Sarcophilus_harrisii
ENSLACG00000008308CPSF310082.200ENSSFOG00015002108cpsf310082.200Scleropages_formosus
ENSLACG00000008308CPSF39581.003ENSSMAG00000020534CPSF39781.003Scophthalmus_maximus
ENSLACG00000008308CPSF310080.753ENSSDUG00000018498CPSF310080.753Seriola_dumerili
ENSLACG00000008308CPSF39979.710ENSSDUG00000002828cpsf39779.710Seriola_dumerili
ENSLACG00000008308CPSF39979.855ENSSLDG00000008469cpsf39384.783Seriola_lalandi_dorsalis
ENSLACG00000008308CPSF310080.753ENSSLDG00000005234CPSF310080.753Seriola_lalandi_dorsalis
ENSLACG00000008308CPSF39868.189ENSSARG00000005186CPSF39968.189Sorex_araneus
ENSLACG00000008308CPSF39681.016ENSSPUG00000015525CPSF39781.016Sphenodon_punctatus
ENSLACG00000008308CPSF39980.145ENSSPAG00000018579cpsf39980.145Stegastes_partitus
ENSLACG00000008308CPSF310080.029ENSSPAG00000002906CPSF310080.029Stegastes_partitus
ENSLACG00000008308CPSF39883.800ENSSSCG00000020799CPSF39983.800Sus_scrofa
ENSLACG00000008308CPSF39983.431ENSTGUG00000013016CPSF39983.431Taeniopygia_guttata
ENSLACG00000008308CPSF35961.858ENSTRUG00000013905CPSF310061.858Takifugu_rubripes
ENSLACG00000008308CPSF39980.463ENSTRUG00000007030cpsf39880.463Takifugu_rubripes
ENSLACG00000008308CPSF39091.989ENSTBEG00000002707CPSF38491.989Tupaia_belangeri
ENSLACG00000008308CPSF37881.962ENSTTRG00000000861CPSF37381.962Tursiops_truncatus
ENSLACG00000008308CPSF39584.404ENSUAMG00000007535CPSF39484.404Ursus_americanus
ENSLACG00000008308CPSF39383.101ENSUMAG00000003676CPSF39983.101Ursus_maritimus
ENSLACG00000008308CPSF39282.334ENSVPAG00000008041CPSF310082.334Vicugna_pacos
ENSLACG00000008308CPSF39883.800ENSVVUG00000002194CPSF39983.800Vulpes_vulpes
ENSLACG00000008308CPSF39983.188ENSXETG00000008263cpsf39983.188Xenopus_tropicalis
ENSLACG00000008308CPSF39978.520ENSXCOG00000019695cpsf39978.520Xiphophorus_couchianus
ENSLACG00000008308CPSF35467.292ENSXCOG00000000957-8767.292Xiphophorus_couchianus
ENSLACG00000008308CPSF310097.059ENSXMAG00000027291CPSF38797.059Xiphophorus_maculatus
ENSLACG00000008308CPSF39978.665ENSXMAG00000009784cpsf39978.665Xiphophorus_maculatus

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