EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000008482 (Gene tree)
Gene ID: 102352262
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: regulator of nonsense transcripts 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 32143 bases
Position: chrJH128727.1:346043-378185
Accession: 102352262
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000009617	ResIII	PF04851.15	1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000009691	UPF1-201	6603	XM_006009934	ENSLACP00000009617	697 (aa)	-	H3AIZ6

Gene Model

Click here to download ENSLACG00000008482's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03013	RNA transport	KEGG
lcm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000008482's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000008482	UPF1	100	97.274	ENSG00000005007	UPF1	62	97.274	Homo_sapiens
ENSLACG00000008482	UPF1	100	92.165	ENSAPOG00000023773	upf1	64	92.837	Acanthochromis_polyacanthus
ENSLACG00000008482	UPF1	100	94.699	ENSAPOG00000010916	-	63	94.699	Acanthochromis_polyacanthus
ENSLACG00000008482	UPF1	100	97.418	ENSAMEG00000011474	UPF1	62	97.418	Ailuropoda_melanoleuca
ENSLACG00000008482	UPF1	100	92.461	ENSACIG00000019949	upf1	63	93.030	Amphilophus_citrinellus
ENSLACG00000008482	UPF1	100	93.257	ENSACIG00000010985	-	68	93.831	Amphilophus_citrinellus
ENSLACG00000008482	UPF1	100	94.699	ENSAOCG00000006352	-	68	94.684	Amphiprion_ocellaris
ENSLACG00000008482	UPF1	100	91.392	ENSAOCG00000018519	upf1	64	92.997	Amphiprion_ocellaris
ENSLACG00000008482	UPF1	100	91.392	ENSAPEG00000016344	upf1	64	92.997	Amphiprion_percula
ENSLACG00000008482	UPF1	100	94.699	ENSAPEG00000006292	-	68	94.684	Amphiprion_percula
ENSLACG00000008482	UPF1	100	90.769	ENSATEG00000017867	upf1	64	92.437	Anabas_testudineus
ENSLACG00000008482	UPF1	100	94.699	ENSATEG00000016606	-	63	94.699	Anabas_testudineus
ENSLACG00000008482	UPF1	100	97.848	ENSAPLG00000009175	UPF1	66	97.848	Anas_platyrhynchos
ENSLACG00000008482	UPF1	100	95.265	ENSANAG00000024107	UPF1	62	95.265	Aotus_nancymaae
ENSLACG00000008482	UPF1	100	94.261	ENSACLG00000022630	-	63	94.261	Astatotilapia_calliptera
ENSLACG00000008482	UPF1	100	92.176	ENSACLG00000007181	upf1	63	92.745	Astatotilapia_calliptera
ENSLACG00000008482	UPF1	100	95.989	ENSAMXG00000042187	upf1	63	96.418	Astyanax_mexicanus
ENSLACG00000008482	UPF1	100	97.418	ENSBTAG00000020922	UPF1	62	97.418	Bos_taurus
ENSLACG00000008482	UPF1	100	97.274	ENSCJAG00000019627	UPF1	62	97.274	Callithrix_jacchus
ENSLACG00000008482	UPF1	100	97.418	ENSCAFG00000014578	UPF1	62	97.418	Canis_familiaris
ENSLACG00000008482	UPF1	100	97.418	ENSCAFG00020012347	UPF1	62	97.418	Canis_lupus_dingo
ENSLACG00000008482	UPF1	100	97.418	ENSCHIG00000011018	UPF1	62	97.418	Capra_hircus
ENSLACG00000008482	UPF1	100	97.131	ENSTSYG00000008877	UPF1	65	97.131	Carlito_syrichta
ENSLACG00000008482	UPF1	100	96.700	ENSCAPG00000005758	UPF1	63	96.700	Cavia_aperea
ENSLACG00000008482	UPF1	100	96.700	ENSCPOG00000025463	UPF1	63	96.700	Cavia_porcellus
ENSLACG00000008482	UPF1	100	97.274	ENSCCAG00000032175	UPF1	62	97.274	Cebus_capucinus
ENSLACG00000008482	UPF1	100	97.274	ENSCATG00000040306	UPF1	67	97.274	Cercocebus_atys
ENSLACG00000008482	UPF1	100	97.274	ENSCLAG00000004037	UPF1	66	97.274	Chinchilla_lanigera
ENSLACG00000008482	UPF1	100	97.274	ENSCSAG00000005276	UPF1	62	97.274	Chlorocebus_sabaeus
ENSLACG00000008482	UPF1	100	97.418	ENSCPBG00000012513	UPF1	63	97.418	Chrysemys_picta_bellii
ENSLACG00000008482	UPF1	64	85.746	ENSCING00000021399	-	54	85.746	Ciona_intestinalis
ENSLACG00000008482	UPF1	100	72.663	ENSCSAVG00000006533	-	63	72.663	Ciona_savignyi
ENSLACG00000008482	UPF1	100	97.274	ENSCANG00000029819	UPF1	65	97.274	Colobus_angolensis_palliatus
ENSLACG00000008482	UPF1	100	96.413	ENSCGRG00001021067	Upf1	63	96.413	Cricetulus_griseus_chok1gshd
ENSLACG00000008482	UPF1	100	96.413	ENSCGRG00000013480	Upf1	65	96.413	Cricetulus_griseus_crigri
ENSLACG00000008482	UPF1	100	84.549	ENSCSEG00000017239	upf1	63	84.593	Cynoglossus_semilaevis
ENSLACG00000008482	UPF1	100	94.269	ENSCSEG00000016159	-	63	94.269	Cynoglossus_semilaevis
ENSLACG00000008482	UPF1	100	94.269	ENSCVAG00000010561	upf1	63	94.269	Cyprinodon_variegatus
ENSLACG00000008482	UPF1	100	95.559	ENSDARG00000016302	upf1	63	96.132	Danio_rerio
ENSLACG00000008482	UPF1	100	92.837	ENSDORG00000009984	Upf1	63	92.837	Dipodomys_ordii
ENSLACG00000008482	UPF1	76	76.994	FBgn0030354	Upf1	50	71.523	Drosophila_melanogaster
ENSLACG00000008482	UPF1	100	97.274	ENSEASG00005006549	UPF1	62	97.274	Equus_asinus_asinus
ENSLACG00000008482	UPF1	100	97.274	ENSECAG00000010639	UPF1	62	97.274	Equus_caballus
ENSLACG00000008482	UPF1	100	95.136	ENSELUG00000012916	-	63	95.136	Esox_lucius
ENSLACG00000008482	UPF1	100	91.607	ENSELUG00000020917	upf1	64	91.892	Esox_lucius
ENSLACG00000008482	UPF1	100	97.418	ENSFCAG00000009757	UPF1	62	97.418	Felis_catus
ENSLACG00000008482	UPF1	100	97.564	ENSFALG00000009312	UPF1	64	97.564	Ficedula_albicollis
ENSLACG00000008482	UPF1	100	97.131	ENSFDAG00000014816	UPF1	66	97.131	Fukomys_damarensis
ENSLACG00000008482	UPF1	100	90.213	ENSFHEG00000006428	upf1	63	90.213	Fundulus_heteroclitus
ENSLACG00000008482	UPF1	87	94.555	ENSFHEG00000016276	-	61	94.555	Fundulus_heteroclitus
ENSLACG00000008482	UPF1	100	93.840	ENSGMOG00000007541	upf1	63	94.269	Gadus_morhua
ENSLACG00000008482	UPF1	100	97.848	ENSGALG00000003220	UPF1	62	97.848	Gallus_gallus
ENSLACG00000008482	UPF1	80	92.908	ENSGAFG00000015443	-	67	95.756	Gambusia_affinis
ENSLACG00000008482	UPF1	100	94.269	ENSGAFG00000004831	upf1	63	94.269	Gambusia_affinis
ENSLACG00000008482	UPF1	100	97.704	ENSGAGG00000022217	UPF1	63	97.704	Gopherus_agassizii
ENSLACG00000008482	UPF1	100	97.274	ENSGGOG00000002608	UPF1	66	97.274	Gorilla_gorilla
ENSLACG00000008482	UPF1	84	98.397	ENSHBUG00000014694	upf1	64	98.397	Haplochromis_burtoni
ENSLACG00000008482	UPF1	79	100.000	ENSHBUG00000008939	upf1	55	100.000	Haplochromis_burtoni
ENSLACG00000008482	UPF1	100	97.131	ENSHGLG00000010900	UPF1	62	97.131	Heterocephalus_glaber_female
ENSLACG00000008482	UPF1	100	94.548	ENSHGLG00100005904	UPF1	63	94.548	Heterocephalus_glaber_male
ENSLACG00000008482	UPF1	100	93.266	ENSHCOG00000008918	upf1	68	92.624	Hippocampus_comes
ENSLACG00000008482	UPF1	100	95.989	ENSIPUG00000005108	UPF1	63	96.418	Ictalurus_punctatus
ENSLACG00000008482	UPF1	100	97.274	ENSSTOG00000009196	UPF1	62	97.274	Ictidomys_tridecemlineatus
ENSLACG00000008482	UPF1	100	96.126	ENSJJAG00000023151	Upf1	62	96.126	Jaculus_jaculus
ENSLACG00000008482	UPF1	100	94.556	ENSKMAG00000004962	upf1	63	94.556	Kryptolebias_marmoratus
ENSLACG00000008482	UPF1	100	94.556	ENSLBEG00000027848	-	63	94.556	Labrus_bergylta
ENSLACG00000008482	UPF1	100	90.309	ENSLBEG00000014862	upf1	64	92.275	Labrus_bergylta
ENSLACG00000008482	UPF1	100	97.991	ENSLOCG00000002072	upf1	63	97.991	Lepisosteus_oculatus
ENSLACG00000008482	UPF1	100	96.700	ENSLAFG00000014963	UPF1	62	96.700	Loxodonta_africana
ENSLACG00000008482	UPF1	100	97.274	ENSMFAG00000037748	UPF1	63	97.274	Macaca_fascicularis
ENSLACG00000008482	UPF1	100	97.274	ENSMMUG00000023286	UPF1	62	97.274	Macaca_mulatta
ENSLACG00000008482	UPF1	100	97.274	ENSMNEG00000000046	UPF1	62	97.274	Macaca_nemestrina
ENSLACG00000008482	UPF1	100	97.274	ENSMLEG00000028404	UPF1	66	97.274	Mandrillus_leucophaeus
ENSLACG00000008482	UPF1	100	94.556	ENSMAMG00000006231	-	63	94.556	Mastacembelus_armatus
ENSLACG00000008482	UPF1	100	90.336	ENSMAMG00000006229	upf1	64	92.297	Mastacembelus_armatus
ENSLACG00000008482	UPF1	100	90.642	ENSMZEG00005003489	upf1	64	92.405	Maylandia_zebra
ENSLACG00000008482	UPF1	100	94.261	ENSMZEG00005016386	-	63	94.261	Maylandia_zebra
ENSLACG00000008482	UPF1	100	97.135	ENSMGAG00000004745	UPF1	66	97.135	Meleagris_gallopavo
ENSLACG00000008482	UPF1	100	96.413	ENSMAUG00000011398	Upf1	63	96.413	Mesocricetus_auratus
ENSLACG00000008482	UPF1	100	97.131	ENSMICG00000001659	UPF1	62	97.131	Microcebus_murinus
ENSLACG00000008482	UPF1	100	96.413	ENSMOCG00000005699	Upf1	62	96.413	Microtus_ochrogaster
ENSLACG00000008482	UPF1	100	91.404	ENSMMOG00000007537	-	66	91.404	Mola_mola
ENSLACG00000008482	UPF1	100	91.966	ENSMMOG00000007881	upf1	63	92.550	Mola_mola
ENSLACG00000008482	UPF1	100	97.561	ENSMODG00000003689	UPF1	63	97.561	Monodelphis_domestica
ENSLACG00000008482	UPF1	100	92.877	ENSMALG00000018100	-	64	92.877	Monopterus_albus
ENSLACG00000008482	UPF1	100	91.822	ENSMALG00000000144	upf1	63	92.253	Monopterus_albus
ENSLACG00000008482	UPF1	100	96.270	MGP_CAROLIEiJ_G0031142	Upf1	63	96.270	Mus_caroli
ENSLACG00000008482	UPF1	100	96.270	ENSMUSG00000058301	Upf1	63	96.270	Mus_musculus
ENSLACG00000008482	UPF1	100	96.270	MGP_PahariEiJ_G0021607	Upf1	63	96.270	Mus_pahari
ENSLACG00000008482	UPF1	100	96.270	MGP_SPRETEiJ_G0032260	Upf1	63	96.270	Mus_spretus
ENSLACG00000008482	UPF1	100	97.418	ENSMPUG00000015516	UPF1	62	97.418	Mustela_putorius_furo
ENSLACG00000008482	UPF1	100	97.131	ENSMLUG00000012122	UPF1	62	97.131	Myotis_lucifugus
ENSLACG00000008482	UPF1	100	96.413	ENSNGAG00000024107	Upf1	62	96.413	Nannospalax_galili
ENSLACG00000008482	UPF1	100	94.261	ENSNBRG00000022069	-	68	94.261	Neolamprologus_brichardi
ENSLACG00000008482	UPF1	100	89.331	ENSNBRG00000000670	upf1	63	89.900	Neolamprologus_brichardi
ENSLACG00000008482	UPF1	100	97.274	ENSNLEG00000006062	UPF1	70	97.274	Nomascus_leucogenys
ENSLACG00000008482	UPF1	100	93.687	ENSOPRG00000014018	UPF1	67	93.257	Ochotona_princeps
ENSLACG00000008482	UPF1	100	97.131	ENSODEG00000012426	UPF1	63	97.131	Octodon_degus
ENSLACG00000008482	UPF1	100	94.261	ENSONIG00000012729	-	63	94.261	Oreochromis_niloticus
ENSLACG00000008482	UPF1	100	91.061	ENSONIG00000010452	upf1	64	92.827	Oreochromis_niloticus
ENSLACG00000008482	UPF1	100	97.139	ENSOANG00000004568	UPF1	62	97.139	Ornithorhynchus_anatinus
ENSLACG00000008482	UPF1	100	94.986	ENSORLG00000008453	upf1	63	94.986	Oryzias_latipes
ENSLACG00000008482	UPF1	100	94.986	ENSORLG00020014758	upf1	63	94.986	Oryzias_latipes_hni
ENSLACG00000008482	UPF1	100	94.986	ENSORLG00015010165	upf1	65	94.737	Oryzias_latipes_hsok
ENSLACG00000008482	UPF1	100	94.986	ENSOMEG00000003665	upf1	63	94.986	Oryzias_melastigma
ENSLACG00000008482	UPF1	100	97.418	ENSOGAG00000012866	UPF1	62	97.418	Otolemur_garnettii
ENSLACG00000008482	UPF1	95	96.667	ENSOARG00000010739	UPF1	61	96.667	Ovis_aries
ENSLACG00000008482	UPF1	100	97.274	ENSPPAG00000043884	UPF1	64	97.274	Pan_paniscus
ENSLACG00000008482	UPF1	100	97.418	ENSPPRG00000023470	UPF1	62	97.418	Panthera_pardus
ENSLACG00000008482	UPF1	100	94.261	ENSPTIG00000010159	UPF1	66	94.261	Panthera_tigris_altaica
ENSLACG00000008482	UPF1	100	97.274	ENSPTRG00000010721	UPF1	62	97.274	Pan_troglodytes
ENSLACG00000008482	UPF1	100	97.274	ENSPANG00000008847	UPF1	63	97.274	Papio_anubis
ENSLACG00000008482	UPF1	84	98.299	ENSPKIG00000006069	upf1	57	98.299	Paramormyrops_kingsleyae
ENSLACG00000008482	UPF1	100	96.700	ENSPSIG00000009491	UPF1	91	96.700	Pelodiscus_sinensis
ENSLACG00000008482	UPF1	100	90.300	ENSPMGG00000017327	upf1	64	90.612	Periophthalmus_magnuspinnatus
ENSLACG00000008482	UPF1	100	96.413	ENSPEMG00000001085	Upf1	62	96.413	Peromyscus_maniculatus_bairdii
ENSLACG00000008482	UPF1	100	90.272	ENSPMAG00000001206	upf1	63	90.272	Petromyzon_marinus
ENSLACG00000008482	UPF1	100	97.561	ENSPCIG00000006156	UPF1	62	97.561	Phascolarctos_cinereus
ENSLACG00000008482	UPF1	100	90.691	ENSPLAG00000018155	-	64	90.691	Poecilia_latipinna
ENSLACG00000008482	UPF1	100	94.413	ENSPLAG00000016232	-	63	94.413	Poecilia_latipinna
ENSLACG00000008482	UPF1	100	91.583	ENSPMEG00000011443	-	63	91.583	Poecilia_mexicana
ENSLACG00000008482	UPF1	100	94.413	ENSPMEG00000016319	-	63	94.413	Poecilia_mexicana
ENSLACG00000008482	UPF1	100	94.413	ENSPREG00000011247	-	63	94.413	Poecilia_reticulata
ENSLACG00000008482	UPF1	100	91.537	ENSPREG00000009940	upf1	64	91.537	Poecilia_reticulata
ENSLACG00000008482	UPF1	100	89.527	ENSPPYG00000009752	UPF1	60	89.527	Pongo_abelii
ENSLACG00000008482	UPF1	100	97.274	ENSPCOG00000023813	UPF1	62	97.274	Propithecus_coquereli
ENSLACG00000008482	UPF1	100	94.261	ENSPNYG00000016731	-	63	94.261	Pundamilia_nyererei
ENSLACG00000008482	UPF1	100	90.642	ENSPNYG00000003694	upf1	64	92.405	Pundamilia_nyererei
ENSLACG00000008482	UPF1	100	96.418	ENSPNAG00000025614	upf1	63	96.418	Pygocentrus_nattereri
ENSLACG00000008482	UPF1	100	96.270	ENSRNOG00000020134	Upf1	63	96.270	Rattus_norvegicus
ENSLACG00000008482	UPF1	100	97.274	ENSRBIG00000013894	UPF1	75	97.274	Rhinopithecus_bieti
ENSLACG00000008482	UPF1	100	97.274	ENSRROG00000040935	UPF1	75	97.274	Rhinopithecus_roxellana
ENSLACG00000008482	UPF1	71	62.020	YMR080C	NAM7	51	62.020	Saccharomyces_cerevisiae
ENSLACG00000008482	UPF1	100	97.274	ENSSBOG00000023632	UPF1	64	97.274	Saimiri_boliviensis_boliviensis
ENSLACG00000008482	UPF1	100	97.139	ENSSHAG00000010499	UPF1	66	97.139	Sarcophilus_harrisii
ENSLACG00000008482	UPF1	100	97.848	ENSSFOG00015021095	upf1	67	97.848	Scleropages_formosus
ENSLACG00000008482	UPF1	100	94.699	ENSSMAG00000021018	-	63	94.699	Scophthalmus_maximus
ENSLACG00000008482	UPF1	100	89.747	ENSSMAG00000005055	upf1	64	91.433	Scophthalmus_maximus
ENSLACG00000008482	UPF1	100	94.842	ENSSDUG00000009629	-	63	94.842	Seriola_dumerili
ENSLACG00000008482	UPF1	100	90.476	ENSSDUG00000013320	upf1	64	92.437	Seriola_dumerili
ENSLACG00000008482	UPF1	100	94.842	ENSSLDG00000006878	-	63	94.842	Seriola_lalandi_dorsalis
ENSLACG00000008482	UPF1	100	91.761	ENSSLDG00000020868	upf1	64	93.059	Seriola_lalandi_dorsalis
ENSLACG00000008482	UPF1	100	97.704	ENSSPUG00000010538	UPF1	63	97.704	Sphenodon_punctatus
ENSLACG00000008482	UPF1	100	93.714	ENSSPAG00000000003	upf1	65	93.857	Stegastes_partitus
ENSLACG00000008482	UPF1	100	93.696	ENSSPAG00000011521	-	63	94.413	Stegastes_partitus
ENSLACG00000008482	UPF1	100	97.274	ENSSSCG00000039301	UPF1	67	97.274	Sus_scrofa
ENSLACG00000008482	UPF1	72	89.109	ENSTGUG00000001057	UPF1	54	89.109	Taeniopygia_guttata
ENSLACG00000008482	UPF1	100	92.264	ENSTRUG00000000150	upf1	64	91.748	Takifugu_rubripes
ENSLACG00000008482	UPF1	100	93.983	ENSTRUG00000005131	-	63	93.983	Takifugu_rubripes
ENSLACG00000008482	UPF1	100	97.418	ENSTTRG00000011544	UPF1	63	97.418	Tursiops_truncatus
ENSLACG00000008482	UPF1	100	97.418	ENSUAMG00000007093	UPF1	62	97.418	Ursus_americanus
ENSLACG00000008482	UPF1	100	97.418	ENSUMAG00000006652	UPF1	72	97.418	Ursus_maritimus
ENSLACG00000008482	UPF1	100	97.418	ENSVVUG00000007797	UPF1	62	97.418	Vulpes_vulpes
ENSLACG00000008482	UPF1	100	77.253	ENSXETG00000013602	upf1	59	77.253	Xenopus_tropicalis
ENSLACG00000008482	UPF1	100	94.269	ENSXCOG00000005764	-	68	94.269	Xiphophorus_couchianus
ENSLACG00000008482	UPF1	95	91.515	ENSXCOG00000015275	-	59	91.515	Xiphophorus_couchianus
ENSLACG00000008482	UPF1	100	91.679	ENSXMAG00000001703	-	63	91.679	Xiphophorus_maculatus
ENSLACG00000008482	UPF1	100	94.269	ENSXMAG00000002540	-	63	94.269	Xiphophorus_maculatus