EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000008617 (Gene tree)
Gene ID: 102356074
Gene Symbol: APEX1
Alias: APE|APE-1|APEN|APEX|APX|HAP1|REF-1|REF1
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 10026 bases
Position: chrJH128711.1:357303-367328
Accession: 102356074
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000009774	Exo_endo_phos	PF03372.23	3.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000009849	APEX1-201	1967	XM_006009861	ENSLACP00000009774	314 (aa)	XP_006009923	H3AJF3

Gene Model

Click here to download ENSLACG00000008617's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000008617's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000008617	APEX1	100	66.981	ENSG00000100823	APEX1	100	67.601	Homo_sapiens
ENSLACG00000008617	APEX1	89	75.357	ENSAPOG00000017002	apex1	99	72.222	Acanthochromis_polyacanthus
ENSLACG00000008617	APEX1	100	66.038	ENSAMEG00000005418	APEX1	100	66.875	Ailuropoda_melanoleuca
ENSLACG00000008617	APEX1	87	78.102	ENSACIG00000010653	apex1	97	76.207	Amphilophus_citrinellus
ENSLACG00000008617	APEX1	89	76.071	ENSAOCG00000009649	apex1	99	72.436	Amphiprion_ocellaris
ENSLACG00000008617	APEX1	89	76.429	ENSAPEG00000021453	apex1	99	72.756	Amphiprion_percula
ENSLACG00000008617	APEX1	87	79.121	ENSATEG00000002883	apex1	97	73.482	Anabas_testudineus
ENSLACG00000008617	APEX1	100	72.240	ENSACAG00000008099	APEX1	100	72.555	Anolis_carolinensis
ENSLACG00000008617	APEX1	100	67.296	ENSANAG00000030117	APEX1	100	67.296	Aotus_nancymaae
ENSLACG00000008617	APEX1	87	78.832	ENSACLG00000018441	apex1	99	73.077	Astatotilapia_calliptera
ENSLACG00000008617	APEX1	100	72.293	ENSAMXG00000034699	apex1	100	72.293	Astyanax_mexicanus
ENSLACG00000008617	APEX1	100	65.625	ENSBTAG00000002745	APEX1	100	66.562	Bos_taurus
ENSLACG00000008617	APEX1	83	43.295	WBGene00001372	exo-3	90	43.295	Caenorhabditis_elegans
ENSLACG00000008617	APEX1	100	67.296	ENSCJAG00000009726	APEX1	100	67.913	Callithrix_jacchus
ENSLACG00000008617	APEX1	100	65.938	ENSCAFG00000032033	APEX1	100	67.188	Canis_familiaris
ENSLACG00000008617	APEX1	54	57.471	ENSCAFG00020023002	-	96	59.770	Canis_lupus_dingo
ENSLACG00000008617	APEX1	100	65.938	ENSCAFG00020014377	-	100	67.188	Canis_lupus_dingo
ENSLACG00000008617	APEX1	100	65.625	ENSCHIG00000007298	-	100	66.562	Capra_hircus
ENSLACG00000008617	APEX1	86	57.565	ENSCHIG00000014537	-	98	53.896	Capra_hircus
ENSLACG00000008617	APEX1	100	66.250	ENSTSYG00000034813	APEX1	100	66.250	Carlito_syrichta
ENSLACG00000008617	APEX1	80	67.843	ENSCAPG00000016235	APEX1	91	70.339	Cavia_aperea
ENSLACG00000008617	APEX1	100	66.562	ENSCPOG00000030909	APEX1	100	66.562	Cavia_porcellus
ENSLACG00000008617	APEX1	100	58.176	ENSCCAG00000031931	-	100	59.062	Cebus_capucinus
ENSLACG00000008617	APEX1	100	67.296	ENSCCAG00000033056	-	100	67.913	Cebus_capucinus
ENSLACG00000008617	APEX1	100	66.667	ENSCATG00000015580	APEX1	100	66.667	Cercocebus_atys
ENSLACG00000008617	APEX1	100	67.188	ENSCLAG00000001002	APEX1	100	67.188	Chinchilla_lanigera
ENSLACG00000008617	APEX1	100	66.981	ENSCSAG00000016685	-	100	66.981	Chlorocebus_sabaeus
ENSLACG00000008617	APEX1	100	66.981	ENSCSAG00000016670	-	100	66.981	Chlorocebus_sabaeus
ENSLACG00000008617	APEX1	100	71.875	ENSCPBG00000009567	APEX1	100	71.875	Chrysemys_picta_bellii
ENSLACG00000008617	APEX1	96	56.908	ENSCING00000008137	-	97	56.908	Ciona_intestinalis
ENSLACG00000008617	APEX1	94	51.351	ENSCSAVG00000007144	-	99	56.031	Ciona_savignyi
ENSLACG00000008617	APEX1	100	67.601	ENSCANG00000030726	APEX1	100	67.601	Colobus_angolensis_palliatus
ENSLACG00000008617	APEX1	100	66.246	ENSCGRG00001017046	Apex1	100	66.246	Cricetulus_griseus_chok1gshd
ENSLACG00000008617	APEX1	100	66.246	ENSCGRG00000008984	Apex1	100	66.246	Cricetulus_griseus_crigri
ENSLACG00000008617	APEX1	99	70.513	ENSCSEG00000017499	apex1	99	70.513	Cynoglossus_semilaevis
ENSLACG00000008617	APEX1	89	77.857	ENSCVAG00000022075	apex1	99	73.567	Cyprinodon_variegatus
ENSLACG00000008617	APEX1	100	75.159	ENSDARG00000045843	apex1	100	76.115	Danio_rerio
ENSLACG00000008617	APEX1	100	63.836	ENSDNOG00000042234	APEX1	95	63.750	Dasypus_novemcinctus
ENSLACG00000008617	APEX1	100	66.875	ENSDORG00000001616	Apex1	100	66.875	Dipodomys_ordii
ENSLACG00000008617	APEX1	100	67.296	ENSETEG00000004855	-	100	67.500	Echinops_telfairi
ENSLACG00000008617	APEX1	75	60.084	ENSEBUG00000000622	-	92	60.084	Eptatretus_burgeri
ENSLACG00000008617	APEX1	100	67.188	ENSEASG00005017489	APEX1	74	67.188	Equus_asinus_asinus
ENSLACG00000008617	APEX1	100	67.188	ENSECAG00000022325	APEX1	82	67.188	Equus_caballus
ENSLACG00000008617	APEX1	86	68.498	ENSEEUG00000012569	APEX1	100	67.014	Erinaceus_europaeus
ENSLACG00000008617	APEX1	100	71.835	ENSELUG00000021706	apex1	100	73.734	Esox_lucius
ENSLACG00000008617	APEX1	100	67.188	ENSFCAG00000030869	APEX1	100	67.188	Felis_catus
ENSLACG00000008617	APEX1	100	67.812	ENSFDAG00000006120	APEX1	100	67.812	Fukomys_damarensis
ENSLACG00000008617	APEX1	96	72.964	ENSFHEG00000009031	apex1	83	73.718	Fundulus_heteroclitus
ENSLACG00000008617	APEX1	99	67.949	ENSGMOG00000007943	apex1	99	67.949	Gadus_morhua
ENSLACG00000008617	APEX1	89	78.571	ENSGAFG00000005311	apex1	99	73.885	Gambusia_affinis
ENSLACG00000008617	APEX1	87	78.467	ENSGACG00000019497	apex1	99	78.195	Gasterosteus_aculeatus
ENSLACG00000008617	APEX1	100	71.384	ENSGAGG00000014999	APEX1	100	71.875	Gopherus_agassizii
ENSLACG00000008617	APEX1	100	66.667	ENSGGOG00000002128	APEX1	100	67.290	Gorilla_gorilla
ENSLACG00000008617	APEX1	87	78.467	ENSHBUG00000005894	apex1	99	72.843	Haplochromis_burtoni
ENSLACG00000008617	APEX1	100	67.812	ENSHGLG00000002848	APEX1	100	67.812	Heterocephalus_glaber_female
ENSLACG00000008617	APEX1	100	67.812	ENSHGLG00100017878	APEX1	100	67.812	Heterocephalus_glaber_male
ENSLACG00000008617	APEX1	99	74.679	ENSHCOG00000009961	apex1	99	74.679	Hippocampus_comes
ENSLACG00000008617	APEX1	100	73.567	ENSIPUG00000005799	apex1	100	73.567	Ictalurus_punctatus
ENSLACG00000008617	APEX1	100	65.938	ENSSTOG00000010096	APEX1	100	66.250	Ictidomys_tridecemlineatus
ENSLACG00000008617	APEX1	89	61.837	ENSJJAG00000020465	-	98	60.265	Jaculus_jaculus
ENSLACG00000008617	APEX1	100	65.312	ENSJJAG00000012067	-	100	65.312	Jaculus_jaculus
ENSLACG00000008617	APEX1	100	57.862	ENSJJAG00000003660	-	100	58.438	Jaculus_jaculus
ENSLACG00000008617	APEX1	99	72.436	ENSKMAG00000021171	apex1	99	72.930	Kryptolebias_marmoratus
ENSLACG00000008617	APEX1	89	76.429	ENSLBEG00000010248	apex1	99	72.115	Labrus_bergylta
ENSLACG00000008617	APEX1	100	73.734	ENSLOCG00000015516	apex1	99	73.734	Lepisosteus_oculatus
ENSLACG00000008617	APEX1	100	64.780	ENSLAFG00000021872	APEX1	100	66.562	Loxodonta_africana
ENSLACG00000008617	APEX1	100	66.667	ENSMFAG00000002565	APEX1	100	66.667	Macaca_fascicularis
ENSLACG00000008617	APEX1	100	66.667	ENSMMUG00000048039	APEX1	100	66.667	Macaca_mulatta
ENSLACG00000008617	APEX1	100	67.712	ENSMNEG00000036944	APEX1	100	67.712	Macaca_nemestrina
ENSLACG00000008617	APEX1	100	66.667	ENSMLEG00000042125	APEX1	100	66.667	Mandrillus_leucophaeus
ENSLACG00000008617	APEX1	89	77.500	ENSMAMG00000023526	apex1	99	73.248	Mastacembelus_armatus
ENSLACG00000008617	APEX1	87	78.832	ENSMZEG00005014187	apex1	99	73.077	Maylandia_zebra
ENSLACG00000008617	APEX1	100	66.458	ENSMAUG00000013994	Apex1	100	66.458	Mesocricetus_auratus
ENSLACG00000008617	APEX1	100	66.562	ENSMICG00000043554	APEX1	100	66.562	Microcebus_murinus
ENSLACG00000008617	APEX1	100	65.312	ENSMOCG00000013721	Apex1	100	65.312	Microtus_ochrogaster
ENSLACG00000008617	APEX1	99	71.246	ENSMMOG00000010031	apex1	97	72.843	Mola_mola
ENSLACG00000008617	APEX1	100	66.250	ENSMODG00000007125	APEX1	100	67.188	Monodelphis_domestica
ENSLACG00000008617	APEX1	89	71.071	ENSMALG00000011699	apex1	77	71.034	Monopterus_albus
ENSLACG00000008617	APEX1	99	66.772	MGP_CAROLIEiJ_G0019209	Apex1	99	66.772	Mus_caroli
ENSLACG00000008617	APEX1	100	66.562	ENSMUSG00000035960	Apex1	100	66.562	Mus_musculus
ENSLACG00000008617	APEX1	100	65.625	MGP_PahariEiJ_G0030232	Apex1	100	66.562	Mus_pahari
ENSLACG00000008617	APEX1	100	66.562	MGP_SPRETEiJ_G0020101	Apex1	100	66.562	Mus_spretus
ENSLACG00000008617	APEX1	100	66.149	ENSMLUG00000028957	APEX1	100	66.149	Myotis_lucifugus
ENSLACG00000008617	APEX1	88	56.383	ENSNGAG00000021748	-	86	56.383	Nannospalax_galili
ENSLACG00000008617	APEX1	100	66.978	ENSNGAG00000002725	-	100	66.978	Nannospalax_galili
ENSLACG00000008617	APEX1	87	78.467	ENSNBRG00000005334	apex1	91	72.756	Neolamprologus_brichardi
ENSLACG00000008617	APEX1	100	66.984	ENSNLEG00000010839	APEX1	100	66.984	Nomascus_leucogenys
ENSLACG00000008617	APEX1	100	66.771	ENSMEUG00000014519	APEX1	100	66.771	Notamacropus_eugenii
ENSLACG00000008617	APEX1	100	65.831	ENSOPRG00000014029	APEX1	100	65.831	Ochotona_princeps
ENSLACG00000008617	APEX1	100	51.840	ENSODEG00000006583	-	100	51.840	Octodon_degus
ENSLACG00000008617	APEX1	97	53.074	ENSODEG00000004777	-	99	53.074	Octodon_degus
ENSLACG00000008617	APEX1	100	67.188	ENSODEG00000001703	-	100	67.188	Octodon_degus
ENSLACG00000008617	APEX1	88	78.339	ENSONIG00000012089	apex1	99	73.397	Oreochromis_niloticus
ENSLACG00000008617	APEX1	90	67.368	ENSOANG00000008836	APEX1	80	65.337	Ornithorhynchus_anatinus
ENSLACG00000008617	APEX1	100	66.981	ENSOCUG00000005022	APEX1	100	66.981	Oryctolagus_cuniculus
ENSLACG00000008617	APEX1	87	79.927	ENSORLG00000012378	apex1	99	74.038	Oryzias_latipes
ENSLACG00000008617	APEX1	87	79.927	ENSORLG00020021371	apex1	99	74.038	Oryzias_latipes_hni
ENSLACG00000008617	APEX1	87	79.927	ENSORLG00015020089	apex1	99	74.038	Oryzias_latipes_hsok
ENSLACG00000008617	APEX1	89	79.286	ENSOMEG00000018876	apex1	99	75.000	Oryzias_melastigma
ENSLACG00000008617	APEX1	100	67.500	ENSOGAG00000013335	-	100	67.500	Otolemur_garnettii
ENSLACG00000008617	APEX1	89	62.191	ENSOGAG00000029355	-	100	59.295	Otolemur_garnettii
ENSLACG00000008617	APEX1	100	65.625	ENSOARG00000019740	-	100	66.562	Ovis_aries
ENSLACG00000008617	APEX1	97	62.581	ENSOARG00000001876	-	100	63.548	Ovis_aries
ENSLACG00000008617	APEX1	99	56.869	ENSOARG00000014424	-	99	56.869	Ovis_aries
ENSLACG00000008617	APEX1	100	66.984	ENSPPAG00000038760	APEX1	100	67.601	Pan_paniscus
ENSLACG00000008617	APEX1	100	66.981	ENSPPRG00000011794	APEX1	100	67.188	Panthera_pardus
ENSLACG00000008617	APEX1	100	67.188	ENSPTIG00000014829	APEX1	100	67.188	Panthera_tigris_altaica
ENSLACG00000008617	APEX1	100	66.984	ENSPTRG00000006093	APEX1	100	67.601	Pan_troglodytes
ENSLACG00000008617	APEX1	100	66.667	ENSPANG00000022757	APEX1	100	66.667	Papio_anubis
ENSLACG00000008617	APEX1	87	79.562	ENSPKIG00000003504	apex1	100	74.684	Paramormyrops_kingsleyae
ENSLACG00000008617	APEX1	85	71.004	ENSPMGG00000016596	apex1	79	71.004	Periophthalmus_magnuspinnatus
ENSLACG00000008617	APEX1	100	66.246	ENSPEMG00000019097	Apex1	100	66.246	Peromyscus_maniculatus_bairdii
ENSLACG00000008617	APEX1	94	73.220	ENSPMAG00000007275	-	100	73.220	Petromyzon_marinus
ENSLACG00000008617	APEX1	100	63.580	ENSPCIG00000023274	APEX1	100	66.458	Phascolarctos_cinereus
ENSLACG00000008617	APEX1	89	77.857	ENSPFOG00000004178	apex1	99	73.248	Poecilia_formosa
ENSLACG00000008617	APEX1	89	77.143	ENSPLAG00000012779	apex1	99	72.611	Poecilia_latipinna
ENSLACG00000008617	APEX1	89	77.857	ENSPMEG00000019623	apex1	99	73.248	Poecilia_mexicana
ENSLACG00000008617	APEX1	89	76.786	ENSPREG00000014298	apex1	99	72.293	Poecilia_reticulata
ENSLACG00000008617	APEX1	100	67.296	ENSPPYG00000005565	APEX1	100	67.296	Pongo_abelii
ENSLACG00000008617	APEX1	100	63.750	ENSPCAG00000010376	APEX1	100	63.750	Procavia_capensis
ENSLACG00000008617	APEX1	100	66.875	ENSPCOG00000021564	APEX1	100	66.875	Propithecus_coquereli
ENSLACG00000008617	APEX1	100	66.460	ENSPVAG00000010736	APEX1	100	66.460	Pteropus_vampyrus
ENSLACG00000008617	APEX1	87	78.832	ENSPNYG00000023940	apex1	99	73.077	Pundamilia_nyererei
ENSLACG00000008617	APEX1	98	71.753	ENSPNAG00000020897	apex1	96	75.000	Pygocentrus_nattereri
ENSLACG00000008617	APEX1	100	65.931	ENSRNOG00000009663	Apex1	100	65.931	Rattus_norvegicus
ENSLACG00000008617	APEX1	100	66.981	ENSRBIG00000038325	APEX1	99	66.981	Rhinopithecus_bieti
ENSLACG00000008617	APEX1	100	58.095	ENSSBOG00000031372	-	100	58.095	Saimiri_boliviensis_boliviensis
ENSLACG00000008617	APEX1	100	66.981	ENSSBOG00000018921	-	100	67.601	Saimiri_boliviensis_boliviensis
ENSLACG00000008617	APEX1	100	66.358	ENSSHAG00000013524	APEX1	100	66.358	Sarcophilus_harrisii
ENSLACG00000008617	APEX1	100	73.567	ENSSFOG00015001948	apex1	100	75.796	Scleropages_formosus
ENSLACG00000008617	APEX1	87	76.642	ENSSMAG00000013348	apex1	99	71.203	Scophthalmus_maximus
ENSLACG00000008617	APEX1	99	72.436	ENSSDUG00000016377	apex1	99	73.718	Seriola_dumerili
ENSLACG00000008617	APEX1	99	71.795	ENSSLDG00000023005	apex1	99	73.077	Seriola_lalandi_dorsalis
ENSLACG00000008617	APEX1	99	69.329	ENSSPUG00000000531	APEX1	99	69.329	Sphenodon_punctatus
ENSLACG00000008617	APEX1	89	75.357	ENSSPAG00000000458	apex1	99	71.338	Stegastes_partitus
ENSLACG00000008617	APEX1	95	40.924	ENSSSCG00000039705	-	99	40.924	Sus_scrofa
ENSLACG00000008617	APEX1	100	66.352	ENSSSCG00000040060	-	100	66.875	Sus_scrofa
ENSLACG00000008617	APEX1	75	57.021	ENSTGUG00000014378	APEX1	100	57.021	Taeniopygia_guttata
ENSLACG00000008617	APEX1	87	76.277	ENSTRUG00000004268	apex1	95	70.347	Takifugu_rubripes
ENSLACG00000008617	APEX1	99	71.795	ENSTNIG00000005778	apex1	99	71.795	Tetraodon_nigroviridis
ENSLACG00000008617	APEX1	100	64.780	ENSTBEG00000006405	APEX1	100	65.000	Tupaia_belangeri
ENSLACG00000008617	APEX1	75	68.511	ENSTTRG00000007860	APEX1	100	68.511	Tursiops_truncatus
ENSLACG00000008617	APEX1	100	66.562	ENSUAMG00000010457	APEX1	100	66.562	Ursus_americanus
ENSLACG00000008617	APEX1	100	66.562	ENSUMAG00000009178	APEX1	100	66.562	Ursus_maritimus
ENSLACG00000008617	APEX1	75	65.106	ENSVPAG00000005083	APEX1	100	65.106	Vicugna_pacos
ENSLACG00000008617	APEX1	100	65.938	ENSVVUG00000009010	APEX1	100	66.875	Vulpes_vulpes
ENSLACG00000008617	APEX1	100	73.502	ENSXETG00000024773	apex1	100	73.817	Xenopus_tropicalis
ENSLACG00000008617	APEX1	99	73.077	ENSXCOG00000015233	apex1	99	74.359	Xiphophorus_couchianus
ENSLACG00000008617	APEX1	100	72.293	ENSXMAG00000006195	apex1	99	74.359	Xiphophorus_maculatus