EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000008625 (Gene tree)
Gene ID: 102353491
Gene Symbol: CPSF6
Alias: CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 50175 bases
Position: chrJH127931.1:343796-393970
Accession: 102353491
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000009781	RRM_1	PF00076.22	6.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000009857	CPSF6-201	2575	XM_006006579	ENSLACP00000009781	551 (aa)	XP_006006641	H3AJG0

Gene Model

Click here to download ENSLACG00000008625's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000008625's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000008625	CPSF6	63	43.038	ENSLACG00000005542	CPSF7	70	43.038

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000008625	CPSF6	94	93.282	ENSG00000111605	CPSF6	94	93.090	Homo_sapiens
ENSLACG00000008625	CPSF6	60	72.289	ENSG00000149532	CPSF7	96	56.322	Homo_sapiens
ENSLACG00000008625	CPSF6	51	91.579	ENSAMEG00000011781	CPSF6	94	91.571	Ailuropoda_melanoleuca
ENSLACG00000008625	CPSF6	51	86.620	ENSACAG00000004381	CPSF6	53	89.437	Anolis_carolinensis
ENSLACG00000008625	CPSF6	91	93.241	ENSANAG00000019240	CPSF6	93	93.042	Aotus_nancymaae
ENSLACG00000008625	CPSF6	66	47.596	ENSANAG00000024635	CPSF7	72	53.158	Aotus_nancymaae
ENSLACG00000008625	CPSF6	62	88.623	ENSAMXG00000016745	CPSF6	75	88.485	Astyanax_mexicanus
ENSLACG00000008625	CPSF6	65	51.282	ENSBTAG00000015263	CPSF7	71	57.558	Bos_taurus
ENSLACG00000008625	CPSF6	94	93.282	ENSBTAG00000007323	CPSF6	94	93.090	Bos_taurus
ENSLACG00000008625	CPSF6	67	55.118	ENSCJAG00000019282	CPSF7	84	56.571	Callithrix_jacchus
ENSLACG00000008625	CPSF6	94	93.282	ENSCJAG00000001798	CPSF6	94	93.090	Callithrix_jacchus
ENSLACG00000008625	CPSF6	92	92.505	ENSCAFG00000000424	CPSF6	94	91.833	Canis_familiaris
ENSLACG00000008625	CPSF6	65	51.282	ENSCAFG00000016152	CPSF7	71	58.140	Canis_familiaris
ENSLACG00000008625	CPSF6	94	93.282	ENSCAFG00020016950	CPSF6	94	93.090	Canis_lupus_dingo
ENSLACG00000008625	CPSF6	65	51.282	ENSCAFG00020012753	CPSF7	71	58.140	Canis_lupus_dingo
ENSLACG00000008625	CPSF6	94	93.282	ENSCHIG00000010792	CPSF6	94	93.090	Capra_hircus
ENSLACG00000008625	CPSF6	65	51.282	ENSCHIG00000014655	CPSF7	71	57.558	Capra_hircus
ENSLACG00000008625	CPSF6	65	51.282	ENSTSYG00000010138	-	71	58.140	Carlito_syrichta
ENSLACG00000008625	CPSF6	97	85.689	ENSTSYG00000008591	CPSF6	100	85.689	Carlito_syrichta
ENSLACG00000008625	CPSF6	61	51.282	ENSCAPG00000006384	CPSF7	70	58.140	Cavia_aperea
ENSLACG00000008625	CPSF6	94	93.090	ENSCPOG00000015201	CPSF6	94	92.898	Cavia_porcellus
ENSLACG00000008625	CPSF6	65	51.282	ENSCPOG00000009980	CPSF7	71	58.140	Cavia_porcellus
ENSLACG00000008625	CPSF6	94	93.282	ENSCCAG00000028149	CPSF6	94	93.090	Cebus_capucinus
ENSLACG00000008625	CPSF6	65	50.769	ENSCCAG00000032367	CPSF7	71	57.558	Cebus_capucinus
ENSLACG00000008625	CPSF6	68	50.769	ENSCATG00000042801	CPSF7	77	57.558	Cercocebus_atys
ENSLACG00000008625	CPSF6	94	93.282	ENSCATG00000039288	CPSF6	94	93.090	Cercocebus_atys
ENSLACG00000008625	CPSF6	65	51.282	ENSCLAG00000003174	CPSF7	71	57.558	Chinchilla_lanigera
ENSLACG00000008625	CPSF6	91	94.012	ENSCLAG00000010149	CPSF6	94	92.814	Chinchilla_lanigera
ENSLACG00000008625	CPSF6	68	50.769	ENSCSAG00000006414	CPSF7	77	57.558	Chlorocebus_sabaeus
ENSLACG00000008625	CPSF6	94	93.474	ENSCPBG00000013322	CPSF6	94	93.282	Chrysemys_picta_bellii
ENSLACG00000008625	CPSF6	75	96.525	ENSCANG00000037294	CPSF6	94	93.014	Colobus_angolensis_palliatus
ENSLACG00000008625	CPSF6	65	51.795	ENSCGRG00001020382	Cpsf7	71	58.721	Cricetulus_griseus_chok1gshd
ENSLACG00000008625	CPSF6	94	94.242	ENSCGRG00001018082	Cpsf6	94	94.050	Cricetulus_griseus_chok1gshd
ENSLACG00000008625	CPSF6	50	88.530	ENSCGRG00000016909	Cpsf6	94	94.012	Cricetulus_griseus_crigri
ENSLACG00000008625	CPSF6	95	40.257	ENSCGRG00000017954	Cpsf7	77	58.721	Cricetulus_griseus_crigri
ENSLACG00000008625	CPSF6	94	72.190	ENSCSEG00000008967	cpsf6	52	81.338	Cynoglossus_semilaevis
ENSLACG00000008625	CPSF6	51	41.237	ENSCSEG00000001956	CPSF7	57	47.552	Cynoglossus_semilaevis
ENSLACG00000008625	CPSF6	79	36.667	ENSCVAG00000007392	CPSF7	69	44.720	Cyprinodon_variegatus
ENSLACG00000008625	CPSF6	52	74.653	ENSCVAG00000014857	cpsf6	52	77.817	Cyprinodon_variegatus
ENSLACG00000008625	CPSF6	51	79.433	ENSDARG00000018618	cpsf6	52	78.369	Danio_rerio
ENSLACG00000008625	CPSF6	67	55.906	ENSDNOG00000018517	CPSF7	84	57.143	Dasypus_novemcinctus
ENSLACG00000008625	CPSF6	94	94.050	ENSDNOG00000015292	CPSF6	94	93.858	Dasypus_novemcinctus
ENSLACG00000008625	CPSF6	65	51.562	ENSETEG00000003765	CPSF7	71	58.140	Echinops_telfairi
ENSLACG00000008625	CPSF6	65	51.282	ENSEASG00005008196	CPSF7	71	58.140	Equus_asinus_asinus
ENSLACG00000008625	CPSF6	94	93.282	ENSEASG00005008066	CPSF6	94	93.090	Equus_asinus_asinus
ENSLACG00000008625	CPSF6	67	55.906	ENSECAG00000018521	CPSF7	91	57.143	Equus_caballus
ENSLACG00000008625	CPSF6	94	93.282	ENSECAG00000015988	CPSF6	94	93.090	Equus_caballus
ENSLACG00000008625	CPSF6	67	55.906	ENSFCAG00000013677	CPSF7	91	57.143	Felis_catus
ENSLACG00000008625	CPSF6	94	93.282	ENSFCAG00000002855	CPSF6	94	93.090	Felis_catus
ENSLACG00000008625	CPSF6	64	56.452	ENSFALG00000011927	CPSF7	76	58.140	Ficedula_albicollis
ENSLACG00000008625	CPSF6	95	38.669	ENSFDAG00000003919	CPSF7	71	53.488	Fukomys_damarensis
ENSLACG00000008625	CPSF6	91	92.843	ENSFDAG00000002281	CPSF6	91	92.460	Fukomys_damarensis
ENSLACG00000008625	CPSF6	52	75.497	ENSFHEG00000019693	cpsf6	54	73.077	Fundulus_heteroclitus
ENSLACG00000008625	CPSF6	53	92.562	ENSGMOG00000012951	cpsf6	53	93.388	Gadus_morhua
ENSLACG00000008625	CPSF6	65	53.368	ENSGALG00000040962	CPSF7	63	58.721	Gallus_gallus
ENSLACG00000008625	CPSF6	94	93.474	ENSGAGG00000010228	CPSF6	94	93.282	Gopherus_agassizii
ENSLACG00000008625	CPSF6	94	94.242	ENSGGOG00000008211	CPSF6	94	94.050	Gorilla_gorilla
ENSLACG00000008625	CPSF6	94	93.090	ENSHGLG00000000792	CPSF6	94	92.898	Heterocephalus_glaber_female
ENSLACG00000008625	CPSF6	68	51.795	ENSHGLG00000019090	-	77	58.140	Heterocephalus_glaber_female
ENSLACG00000008625	CPSF6	94	90.385	ENSHGLG00100013861	CPSF6	94	92.814	Heterocephalus_glaber_male
ENSLACG00000008625	CPSF6	51	73.239	ENSHCOG00000014555	cpsf6	51	76.056	Hippocampus_comes
ENSLACG00000008625	CPSF6	65	51.282	ENSSTOG00000007708	CPSF7	71	58.140	Ictidomys_tridecemlineatus
ENSLACG00000008625	CPSF6	68	51.282	ENSJJAG00000019390	Cpsf7	77	58.140	Jaculus_jaculus
ENSLACG00000008625	CPSF6	74	40.884	ENSLBEG00000000947	CPSF7	72	39.080	Labrus_bergylta
ENSLACG00000008625	CPSF6	67	94.118	ENSLOCG00000016190	cpsf6	67	94.118	Lepisosteus_oculatus
ENSLACG00000008625	CPSF6	94	93.282	ENSLAFG00000030413	CPSF6	94	93.090	Loxodonta_africana
ENSLACG00000008625	CPSF6	65	51.282	ENSLAFG00000032084	CPSF7	71	58.140	Loxodonta_africana
ENSLACG00000008625	CPSF6	94	93.282	ENSMFAG00000045318	CPSF6	94	93.090	Macaca_fascicularis
ENSLACG00000008625	CPSF6	65	50.769	ENSMFAG00000001401	CPSF7	71	57.558	Macaca_fascicularis
ENSLACG00000008625	CPSF6	94	94.242	ENSMMUG00000002921	CPSF6	94	94.050	Macaca_mulatta
ENSLACG00000008625	CPSF6	68	50.769	ENSMMUG00000015280	CPSF7	77	57.558	Macaca_mulatta
ENSLACG00000008625	CPSF6	68	50.769	ENSMNEG00000029585	CPSF7	77	57.558	Macaca_nemestrina
ENSLACG00000008625	CPSF6	94	93.282	ENSMNEG00000036311	CPSF6	94	93.090	Macaca_nemestrina
ENSLACG00000008625	CPSF6	75	96.525	ENSMLEG00000003957	CPSF6	94	93.014	Mandrillus_leucophaeus
ENSLACG00000008625	CPSF6	65	50.769	ENSMLEG00000031269	CPSF7	69	57.558	Mandrillus_leucophaeus
ENSLACG00000008625	CPSF6	95	42.018	ENSMGAG00000004876	CPSF7	62	58.683	Meleagris_gallopavo
ENSLACG00000008625	CPSF6	94	93.282	ENSMAUG00000013240	Cpsf6	94	93.090	Mesocricetus_auratus
ENSLACG00000008625	CPSF6	65	51.282	ENSMAUG00000013020	Cpsf7	71	58.140	Mesocricetus_auratus
ENSLACG00000008625	CPSF6	94	94.242	ENSMICG00000007385	-	94	94.050	Microcebus_murinus
ENSLACG00000008625	CPSF6	65	51.282	ENSMICG00000013788	CPSF7	71	58.140	Microcebus_murinus
ENSLACG00000008625	CPSF6	65	51.282	ENSMOCG00000000072	Cpsf7	71	58.140	Microtus_ochrogaster
ENSLACG00000008625	CPSF6	94	94.242	ENSMOCG00000013982	Cpsf6	94	94.050	Microtus_ochrogaster
ENSLACG00000008625	CPSF6	94	93.282	ENSMODG00000007123	CPSF6	94	93.090	Monodelphis_domestica
ENSLACG00000008625	CPSF6	65	52.284	ENSMODG00000020364	CPSF7	72	57.377	Monodelphis_domestica
ENSLACG00000008625	CPSF6	74	88.660	ENSMALG00000014908	cpsf6	78	88.764	Monopterus_albus
ENSLACG00000008625	CPSF6	94	94.242	MGP_CAROLIEiJ_G0015834	Cpsf6	94	94.050	Mus_caroli
ENSLACG00000008625	CPSF6	65	51.282	MGP_CAROLIEiJ_G0022690	Cpsf7	71	58.140	Mus_caroli
ENSLACG00000008625	CPSF6	94	94.050	ENSMUSG00000055531	Cpsf6	94	93.858	Mus_musculus
ENSLACG00000008625	CPSF6	65	51.282	ENSMUSG00000034820	Cpsf7	71	58.140	Mus_musculus
ENSLACG00000008625	CPSF6	65	51.282	MGP_PahariEiJ_G0014184	Cpsf7	71	58.140	Mus_pahari
ENSLACG00000008625	CPSF6	81	88.732	MGP_PahariEiJ_G0031253	Cpsf6	87	92.760	Mus_pahari
ENSLACG00000008625	CPSF6	65	51.282	MGP_SPRETEiJ_G0023604	Cpsf7	71	58.140	Mus_spretus
ENSLACG00000008625	CPSF6	94	94.050	MGP_SPRETEiJ_G0016657	Cpsf6	94	93.858	Mus_spretus
ENSLACG00000008625	CPSF6	61	50.256	ENSMPUG00000014163	CPSF7	66	56.977	Mustela_putorius_furo
ENSLACG00000008625	CPSF6	68	51.282	ENSMLUG00000013278	CPSF7	77	58.140	Myotis_lucifugus
ENSLACG00000008625	CPSF6	67	87.770	ENSMLUG00000028728	-	93	88.018	Myotis_lucifugus
ENSLACG00000008625	CPSF6	51	88.256	ENSMLUG00000004172	-	94	89.768	Myotis_lucifugus
ENSLACG00000008625	CPSF6	94	94.242	ENSNGAG00000015901	Cpsf6	94	94.050	Nannospalax_galili
ENSLACG00000008625	CPSF6	65	51.282	ENSNGAG00000005031	Cpsf7	71	58.140	Nannospalax_galili
ENSLACG00000008625	CPSF6	94	93.282	ENSNLEG00000003798	CPSF6	94	93.090	Nomascus_leucogenys
ENSLACG00000008625	CPSF6	65	50.769	ENSNLEG00000002529	CPSF7	65	57.558	Nomascus_leucogenys
ENSLACG00000008625	CPSF6	65	53.646	ENSMEUG00000002261	CPSF7	71	58.140	Notamacropus_eugenii
ENSLACG00000008625	CPSF6	91	76.048	ENSODEG00000004418	-	81	94.915	Octodon_degus
ENSLACG00000008625	CPSF6	95	93.487	ENSODEG00000018399	-	95	93.282	Octodon_degus
ENSLACG00000008625	CPSF6	65	48.990	ENSODEG00000002610	CPSF7	71	57.714	Octodon_degus
ENSLACG00000008625	CPSF6	79	71.523	ENSODEG00000007109	-	66	70.440	Octodon_degus
ENSLACG00000008625	CPSF6	91	79.681	ENSOANG00000005944	CPSF6	50	84.528	Ornithorhynchus_anatinus
ENSLACG00000008625	CPSF6	99	39.860	ENSOCUG00000024726	CPSF7	71	57.558	Oryctolagus_cuniculus
ENSLACG00000008625	CPSF6	56	38.411	ENSORLG00000006495	CPSF7	69	40.606	Oryzias_latipes
ENSLACG00000008625	CPSF6	75	36.923	ENSORLG00020012657	CPSF7	69	40.606	Oryzias_latipes_hni
ENSLACG00000008625	CPSF6	56	38.411	ENSORLG00015011091	CPSF7	69	40.606	Oryzias_latipes_hsok
ENSLACG00000008625	CPSF6	51	73.519	ENSOMEG00000009425	cpsf6	52	72.474	Oryzias_melastigma
ENSLACG00000008625	CPSF6	65	51.282	ENSOGAG00000027958	CPSF7	66	58.140	Otolemur_garnettii
ENSLACG00000008625	CPSF6	95	41.144	ENSOARG00000012937	CPSF7	64	57.558	Ovis_aries
ENSLACG00000008625	CPSF6	65	50.769	ENSPPAG00000028232	CPSF7	70	57.558	Pan_paniscus
ENSLACG00000008625	CPSF6	95	38.930	ENSPPRG00000008538	CPSF7	71	58.140	Panthera_pardus
ENSLACG00000008625	CPSF6	94	93.282	ENSPPRG00000021620	CPSF6	94	93.090	Panthera_pardus
ENSLACG00000008625	CPSF6	65	51.282	ENSPTIG00000021699	CPSF7	71	58.140	Panthera_tigris_altaica
ENSLACG00000008625	CPSF6	65	50.769	ENSPTRG00000003742	CPSF7	71	57.558	Pan_troglodytes
ENSLACG00000008625	CPSF6	94	94.242	ENSPTRG00000005205	CPSF6	94	94.050	Pan_troglodytes
ENSLACG00000008625	CPSF6	65	50.769	ENSPANG00000006037	CPSF7	68	57.558	Papio_anubis
ENSLACG00000008625	CPSF6	94	93.282	ENSPANG00000011641	CPSF6	94	93.090	Papio_anubis
ENSLACG00000008625	CPSF6	51	81.979	ENSPKIG00000003081	-	51	81.979	Paramormyrops_kingsleyae
ENSLACG00000008625	CPSF6	61	48.588	ENSPKIG00000018054	CPSF7	80	45.213	Paramormyrops_kingsleyae
ENSLACG00000008625	CPSF6	68	51.282	ENSPEMG00000012648	Cpsf7	77	58.140	Peromyscus_maniculatus_bairdii
ENSLACG00000008625	CPSF6	50	42.123	ENSPMAG00000008077	-	82	46.256	Petromyzon_marinus
ENSLACG00000008625	CPSF6	70	48.045	ENSPCIG00000002551	CPSF7	84	56.284	Phascolarctos_cinereus
ENSLACG00000008625	CPSF6	94	93.282	ENSPCIG00000019063	CPSF6	94	93.090	Phascolarctos_cinereus
ENSLACG00000008625	CPSF6	52	77.431	ENSPLAG00000005715	cpsf6	52	81.338	Poecilia_latipinna
ENSLACG00000008625	CPSF6	52	77.431	ENSPMEG00000001353	cpsf6	52	81.338	Poecilia_mexicana
ENSLACG00000008625	CPSF6	52	77.431	ENSPREG00000004417	cpsf6	52	81.338	Poecilia_reticulata
ENSLACG00000008625	CPSF6	65	50.769	ENSPPYG00000003188	CPSF7	71	57.558	Pongo_abelii
ENSLACG00000008625	CPSF6	94	93.282	ENSPPYG00000004756	CPSF6	94	93.090	Pongo_abelii
ENSLACG00000008625	CPSF6	65	51.282	ENSPCOG00000011976	CPSF7	71	58.140	Propithecus_coquereli
ENSLACG00000008625	CPSF6	94	94.050	ENSPCOG00000024384	CPSF6	94	93.858	Propithecus_coquereli
ENSLACG00000008625	CPSF6	65	51.282	ENSPVAG00000010675	CPSF7	71	58.140	Pteropus_vampyrus
ENSLACG00000008625	CPSF6	54	47.134	ENSPNAG00000015073	CPSF7	69	49.697	Pygocentrus_nattereri
ENSLACG00000008625	CPSF6	51	79.225	ENSPNAG00000024098	CPSF6	52	79.225	Pygocentrus_nattereri
ENSLACG00000008625	CPSF6	91	51.282	ENSRNOG00000020668	Cpsf7	77	58.140	Rattus_norvegicus
ENSLACG00000008625	CPSF6	94	93.282	ENSRNOG00000005927	Cpsf6	94	93.090	Rattus_norvegicus
ENSLACG00000008625	CPSF6	67	55.118	ENSRBIG00000031429	CPSF7	91	56.571	Rhinopithecus_bieti
ENSLACG00000008625	CPSF6	94	94.242	ENSRBIG00000042827	CPSF6	94	94.050	Rhinopithecus_bieti
ENSLACG00000008625	CPSF6	65	50.769	ENSRROG00000045009	CPSF7	71	57.558	Rhinopithecus_roxellana
ENSLACG00000008625	CPSF6	94	93.282	ENSRROG00000042758	CPSF6	94	93.090	Rhinopithecus_roxellana
ENSLACG00000008625	CPSF6	75	96.525	ENSSBOG00000010652	CPSF6	94	92.751	Saimiri_boliviensis_boliviensis
ENSLACG00000008625	CPSF6	65	50.769	ENSSBOG00000018431	CPSF7	71	57.558	Saimiri_boliviensis_boliviensis
ENSLACG00000008625	CPSF6	62	51.042	ENSSHAG00000011964	CPSF7	69	58.140	Sarcophilus_harrisii
ENSLACG00000008625	CPSF6	92	32.892	ENSSFOG00015010288	cpsf7	78	40.659	Scleropages_formosus
ENSLACG00000008625	CPSF6	95	80.843	ENSSFOG00015015803	CPSF6	94	78.695	Scleropages_formosus
ENSLACG00000008625	CPSF6	95	78.435	ENSSFOG00015001688	CPSF6	82	81.262	Scleropages_formosus
ENSLACG00000008625	CPSF6	87	93.725	ENSSARG00000006743	CPSF6	82	93.725	Sorex_araneus
ENSLACG00000008625	CPSF6	65	52.604	ENSSPUG00000019344	CPSF7	73	55.233	Sphenodon_punctatus
ENSLACG00000008625	CPSF6	94	86.775	ENSSPUG00000001238	CPSF6	95	87.862	Sphenodon_punctatus
ENSLACG00000008625	CPSF6	94	93.282	ENSSSCG00000038031	CPSF6	94	93.090	Sus_scrofa
ENSLACG00000008625	CPSF6	67	55.906	ENSSSCG00000013083	CPSF7	84	57.143	Sus_scrofa
ENSLACG00000008625	CPSF6	62	53.333	ENSTGUG00000006513	CPSF7	71	54.971	Taeniopygia_guttata
ENSLACG00000008625	CPSF6	61	50.769	ENSTTRG00000011085	CPSF7	70	58.140	Tursiops_truncatus
ENSLACG00000008625	CPSF6	65	51.282	ENSUAMG00000017809	CPSF7	71	58.140	Ursus_americanus
ENSLACG00000008625	CPSF6	68	51.282	ENSUMAG00000011825	CPSF7	77	58.140	Ursus_maritimus
ENSLACG00000008625	CPSF6	67	55.906	ENSVVUG00000004939	CPSF7	84	57.143	Vulpes_vulpes
ENSLACG00000008625	CPSF6	97	41.026	ENSXETG00000006715	cpsf7	58	42.000	Xenopus_tropicalis
ENSLACG00000008625	CPSF6	52	77.431	ENSXCOG00000013423	cpsf6	52	81.338	Xiphophorus_couchianus