EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSLACG00000008691 (Gene tree)
Gene ID
102366445
Gene Symbol
UPF3B
Alias
HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Latimeria_chalumnae
Status
putative
Strand
Plus strand
Length
10374 bases
Position
chrJH127537.1:363362-373735
Accession
102366445
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSLACP00000009856Smg4_UPF3PF03467.151.3e-5411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSLACT00000009932UPF3B-2011413XM_006003857ENSLACP00000009856470 (aa)XP_006003920H3AJN5
Gene Model
Click here to download ENSLACG00000008691's gene model file
Pathways
Pathway IDPathway NameSource
lcm03013RNA transportKEGG
lcm03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000008691's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSLACG00000008691UPF3B8951.651ENSG00000169062UPF3A8245.673Homo_sapiens
ENSLACG00000008691UPF3B10059.548ENSG00000125351UPF3B9569.082Homo_sapiens
ENSLACG00000008691UPF3B10061.458ENSAPOG00000012775upf3b10060.797Acanthochromis_polyacanthus
ENSLACG00000008691UPF3B10058.200ENSAMEG00000000163UPF3B9061.872Ailuropoda_melanoleuca
ENSLACG00000008691UPF3B10057.732ENSACIG00000013582upf3b10056.522Amphilophus_citrinellus
ENSLACG00000008691UPF3B10059.375ENSAOCG00000000706upf3b10059.375Amphiprion_ocellaris
ENSLACG00000008691UPF3B10060.208ENSAPEG00000005545upf3b10061.864Amphiprion_percula
ENSLACG00000008691UPF3B10060.833ENSATEG00000018742upf3b10062.076Anabas_testudineus
ENSLACG00000008691UPF3B9255.682ENSACAG00000001540UPF3A9750.000Anolis_carolinensis
ENSLACG00000008691UPF3B9761.915ENSACAG00000003625UPF3B9761.290Anolis_carolinensis
ENSLACG00000008691UPF3B10058.000ENSANAG00000021894-7979.747Aotus_nancymaae
ENSLACG00000008691UPF3B8949.884ENSANAG00000021713UPF3A8343.571Aotus_nancymaae
ENSLACG00000008691UPF3B10055.647ENSANAG00000025598-9860.870Aotus_nancymaae
ENSLACG00000008691UPF3B9861.388ENSACLG00000001649upf3b9761.707Astatotilapia_calliptera
ENSLACG00000008691UPF3B6576.154ENSAMXG00000000199upf3b9778.261Astyanax_mexicanus
ENSLACG00000008691UPF3B6369.231ENSBTAG00000035615UPF3B7779.747Bos_taurus
ENSLACG00000008691UPF3B10058.000ENSCJAG00000004975UPF3B9468.599Callithrix_jacchus
ENSLACG00000008691UPF3B9249.887ENSCJAG00000019102UPF3A8643.088Callithrix_jacchus
ENSLACG00000008691UPF3B10058.135ENSCAFG00000018426UPF3B8962.118Canis_familiaris
ENSLACG00000008691UPF3B10057.841ENSCAFG00020004074UPF3B7279.710Canis_lupus_dingo
ENSLACG00000008691UPF3B8747.317ENSCHIG00000011454-8440.541Capra_hircus
ENSLACG00000008691UPF3B10058.517ENSCHIG00000000247-9059.778Capra_hircus
ENSLACG00000008691UPF3B9757.000ENSCHIG00000018011-7779.747Capra_hircus
ENSLACG00000008691UPF3B10059.063ENSTSYG00000014690UPF3B9061.187Carlito_syrichta
ENSLACG00000008691UPF3B8951.054ENSCCAG00000018406UPF3A8243.095Cebus_capucinus
ENSLACG00000008691UPF3B8742.169ENSCCAG00000029813-5163.636Cebus_capucinus
ENSLACG00000008691UPF3B8950.824ENSCATG00000029733UPF3A8144.286Cercocebus_atys
ENSLACG00000008691UPF3B10059.548ENSCATG00000017506UPF3B9469.082Cercocebus_atys
ENSLACG00000008691UPF3B6766.261ENSCLAG00000003260UPF3B9060.135Chinchilla_lanigera
ENSLACG00000008691UPF3B8950.231ENSCSAG00000017388UPF3A8242.790Chlorocebus_sabaeus
ENSLACG00000008691UPF3B10058.000ENSCSAG00000018348UPF3B10057.600Chlorocebus_sabaeus
ENSLACG00000008691UPF3B9956.780ENSCPBG00000020685UPF3B9955.932Chrysemys_picta_bellii
ENSLACG00000008691UPF3B6568.498ENSCANG00000029220UPF3B9469.082Colobus_angolensis_palliatus
ENSLACG00000008691UPF3B10056.237ENSCGRG00001006858-9060.274Cricetulus_griseus_chok1gshd
ENSLACG00000008691UPF3B6760.542ENSCGRG00001013643-7863.140Cricetulus_griseus_chok1gshd
ENSLACG00000008691UPF3B9259.447ENSCGRG00000007627Upf3b10060.138Cricetulus_griseus_crigri
ENSLACG00000008691UPF3B9361.470ENSCSEG00000002046upf3b9361.184Cynoglossus_semilaevis
ENSLACG00000008691UPF3B10057.474ENSCVAG00000005030upf3b10057.708Cyprinodon_variegatus
ENSLACG00000008691UPF3B9361.818ENSDARG00000000489upf3b10059.534Danio_rerio
ENSLACG00000008691UPF3B10055.361ENSDNOG00000008665UPF3B9058.222Dasypus_novemcinctus
ENSLACG00000008691UPF3B10059.267ENSDORG00000006077Upf3b10057.906Dipodomys_ordii
ENSLACG00000008691UPF3B9247.608ENSETEG00000010110UPF3A8540.139Echinops_telfairi
ENSLACG00000008691UPF3B10057.755ENSEASG00005012919UPF3B10053.049Equus_asinus_asinus
ENSLACG00000008691UPF3B10057.755ENSECAG00000016947UPF3B10053.049Equus_caballus
ENSLACG00000008691UPF3B5675.849ENSELUG00000020389upf3b10057.347Esox_lucius
ENSLACG00000008691UPF3B8753.365ENSFCAG00000014602UPF3A8144.526Felis_catus
ENSLACG00000008691UPF3B10059.754ENSFCAG00000004388UPF3B9061.416Felis_catus
ENSLACG00000008691UPF3B9953.922ENSFALG00000001569UPF3B9952.871Ficedula_albicollis
ENSLACG00000008691UPF3B10059.476ENSFDAG00000018869UPF3B9061.991Fukomys_damarensis
ENSLACG00000008691UPF3B9358.916ENSFHEG00000017895upf3b10058.686Fundulus_heteroclitus
ENSLACG00000008691UPF3B9356.828ENSGMOG00000001621upf3b10054.812Gadus_morhua
ENSLACG00000008691UPF3B10061.336ENSGALG00000008618UPF3B10060.941Gallus_gallus
ENSLACG00000008691UPF3B10057.862ENSGAFG00000000829upf3b10059.236Gambusia_affinis
ENSLACG00000008691UPF3B9260.271ENSGACG00000017435upf3b9478.599Gasterosteus_aculeatus
ENSLACG00000008691UPF3B9964.619ENSGAGG00000001219UPF3B9963.002Gopherus_agassizii
ENSLACG00000008691UPF3B8842.891ENSGGOG00000043074-8138.995Gorilla_gorilla
ENSLACG00000008691UPF3B10059.548ENSGGOG00000023995UPF3B9469.082Gorilla_gorilla
ENSLACG00000008691UPF3B8951.168ENSGGOG00000015428UPF3A8244.762Gorilla_gorilla
ENSLACG00000008691UPF3B8742.619ENSGGOG00000041219-8639.904Gorilla_gorilla
ENSLACG00000008691UPF3B9861.171ENSHBUG00000017393upf3b9762.801Haplochromis_burtoni
ENSLACG00000008691UPF3B6760.182ENSHGLG00000011189-8356.233Heterocephalus_glaber_female
ENSLACG00000008691UPF3B10058.871ENSHGLG00000019582-9061.538Heterocephalus_glaber_female
ENSLACG00000008691UPF3B6760.182ENSHGLG00100001889-8356.510Heterocephalus_glaber_male
ENSLACG00000008691UPF3B10058.727ENSHGLG00100002042-9060.274Heterocephalus_glaber_male
ENSLACG00000008691UPF3B10057.054ENSHCOG00000017004upf3b10058.228Hippocampus_comes
ENSLACG00000008691UPF3B9550.328ENSHCOG00000013985upf3a6575.974Hippocampus_comes
ENSLACG00000008691UPF3B10060.499ENSIPUG00000019249upf3b10059.789Ictalurus_punctatus
ENSLACG00000008691UPF3B10056.914ENSSTOG00000001101UPF3B9060.641Ictidomys_tridecemlineatus
ENSLACG00000008691UPF3B10057.700ENSJJAG00000000053Upf3b9055.430Jaculus_jaculus
ENSLACG00000008691UPF3B10063.048ENSKMAG00000020300upf3b10060.752Kryptolebias_marmoratus
ENSLACG00000008691UPF3B5975.180ENSLBEG00000028689upf3b5877.358Labrus_bergylta
ENSLACG00000008691UPF3B6673.312ENSLOCG00000015238upf3b10060.000Lepisosteus_oculatus
ENSLACG00000008691UPF3B10056.914ENSLAFG00000001267UPF3B8761.882Loxodonta_africana
ENSLACG00000008691UPF3B10059.343ENSMFAG00000045414UPF3B9469.082Macaca_fascicularis
ENSLACG00000008691UPF3B8451.365ENSMMUG00000007449UPF3A8344.717Macaca_mulatta
ENSLACG00000008691UPF3B10059.343ENSMMUG00000020222UPF3B9469.082Macaca_mulatta
ENSLACG00000008691UPF3B8750.718ENSMNEG00000036402UPF3A7944.125Macaca_nemestrina
ENSLACG00000008691UPF3B10059.343ENSMNEG00000039794UPF3B9469.082Macaca_nemestrina
ENSLACG00000008691UPF3B10059.548ENSMLEG00000010999UPF3B9469.082Mandrillus_leucophaeus
ENSLACG00000008691UPF3B8750.239ENSMLEG00000014726UPF3A8943.405Mandrillus_leucophaeus
ENSLACG00000008691UPF3B9861.388ENSMZEG00005007871upf3b9761.707Maylandia_zebra
ENSLACG00000008691UPF3B8853.664ENSMGAG00000014837UPF3A9547.912Meleagris_gallopavo
ENSLACG00000008691UPF3B8561.538ENSMGAG00000007728UPF3B9961.307Meleagris_gallopavo
ENSLACG00000008691UPF3B9557.461ENSMAUG00000008705Upf3b9057.763Mesocricetus_auratus
ENSLACG00000008691UPF3B6569.597ENSMICG00000001743UPF3B6479.747Microcebus_murinus
ENSLACG00000008691UPF3B9756.187ENSMOCG00000017893Upf3b8757.763Microtus_ochrogaster
ENSLACG00000008691UPF3B10057.203ENSMMOG00000004183upf3b10055.624Mola_mola
ENSLACG00000008691UPF3B9265.197ENSMODG00000010232UPF3B9963.109Monodelphis_domestica
ENSLACG00000008691UPF3B9356.027ENSMODG00000003159UPF3A9950.225Monodelphis_domestica
ENSLACG00000008691UPF3B6769.841ENSMALG00000008042upf3b9462.528Monopterus_albus
ENSLACG00000008691UPF3B10055.823MGP_CAROLIEiJ_G0032999Upf3b9059.817Mus_caroli
ENSLACG00000008691UPF3B10055.441ENSMUSG00000036572Upf3b9059.817Mus_musculus
ENSLACG00000008691UPF3B10056.024MGP_PahariEiJ_G0031543Upf3b9059.589Mus_pahari
ENSLACG00000008691UPF3B10055.441MGP_SPRETEiJ_G0034152Upf3b9059.817Mus_spretus
ENSLACG00000008691UPF3B9761.181ENSMPUG00000001531UPF3B8962.588Mustela_putorius_furo
ENSLACG00000008691UPF3B9251.351ENSMLUG00000015905UPF3A9845.291Myotis_lucifugus
ENSLACG00000008691UPF3B10058.400ENSMLUG00000010821UPF3B9062.329Myotis_lucifugus
ENSLACG00000008691UPF3B10059.674ENSNGAG00000008231Upf3b9060.820Nannospalax_galili
ENSLACG00000008691UPF3B9562.361ENSNLEG00000014897UPF3B9061.872Nomascus_leucogenys
ENSLACG00000008691UPF3B8951.179ENSNLEG00000007563UPF3A8245.084Nomascus_leucogenys
ENSLACG00000008691UPF3B10056.162ENSODEG00000002186-9058.957Octodon_degus
ENSLACG00000008691UPF3B5780.597ENSONIG00000002536upf3b9960.805Oreochromis_niloticus
ENSLACG00000008691UPF3B8247.475ENSOANG00000006985-9538.520Ornithorhynchus_anatinus
ENSLACG00000008691UPF3B9061.502ENSOANG00000002594-9758.605Ornithorhynchus_anatinus
ENSLACG00000008691UPF3B10057.171ENSOCUG00000010213UPF3B9060.265Oryctolagus_cuniculus
ENSLACG00000008691UPF3B10058.542ENSORLG00000001026upf3b10055.172Oryzias_latipes
ENSLACG00000008691UPF3B8952.358ENSORLG00020014317upf3a8353.333Oryzias_latipes_hni
ENSLACG00000008691UPF3B10057.884ENSORLG00020003758upf3b10054.747Oryzias_latipes_hni
ENSLACG00000008691UPF3B10058.958ENSORLG00015012954upf3b10055.984Oryzias_latipes_hsok
ENSLACG00000008691UPF3B10056.965ENSOMEG00000014736upf3b10055.578Oryzias_melastigma
ENSLACG00000008691UPF3B9756.108ENSOGAG00000033003-8951.748Otolemur_garnettii
ENSLACG00000008691UPF3B10059.138ENSOGAG00000004643-9056.109Otolemur_garnettii
ENSLACG00000008691UPF3B10058.167ENSOARG00000016051-9059.382Ovis_aries
ENSLACG00000008691UPF3B9250.339ENSOARG00000009004UPF3A8542.657Ovis_aries
ENSLACG00000008691UPF3B8751.338ENSOARG00000007869-9148.166Ovis_aries
ENSLACG00000008691UPF3B8951.179ENSPPAG00000042267UPF3A8245.433Pan_paniscus
ENSLACG00000008691UPF3B10059.548ENSPPAG00000040390UPF3B9469.082Pan_paniscus
ENSLACG00000008691UPF3B8753.717ENSPPRG00000025062UPF3A8145.610Panthera_pardus
ENSLACG00000008691UPF3B10057.800ENSPPRG00000023536UPF3B9061.416Panthera_pardus
ENSLACG00000008691UPF3B10058.149ENSPTIG00000015264UPF3B7979.747Panthera_tigris_altaica
ENSLACG00000008691UPF3B8739.952ENSPTRG00000051640-8639.467Pan_troglodytes
ENSLACG00000008691UPF3B8740.580ENSPTRG00000041835-8537.530Pan_troglodytes
ENSLACG00000008691UPF3B8738.499ENSPTRG00000041187-8638.795Pan_troglodytes
ENSLACG00000008691UPF3B10059.548ENSPTRG00000022228UPF3B9469.082Pan_troglodytes
ENSLACG00000008691UPF3B8951.179ENSPTRG00000006073UPF3A8245.433Pan_troglodytes
ENSLACG00000008691UPF3B8751.683ENSPANG00000004346UPF3A8145.012Papio_anubis
ENSLACG00000008691UPF3B10059.548ENSPANG00000000900UPF3B9469.082Papio_anubis
ENSLACG00000008691UPF3B10059.875ENSPKIG00000019226upf3b9378.472Paramormyrops_kingsleyae
ENSLACG00000008691UPF3B5073.840ENSPSIG00000005833UPF3B6682.979Pelodiscus_sinensis
ENSLACG00000008691UPF3B8757.279ENSPSIG00000007468UPF3A9649.637Pelodiscus_sinensis
ENSLACG00000008691UPF3B5674.144ENSPMGG00000016067upf3b9574.144Periophthalmus_magnuspinnatus
ENSLACG00000008691UPF3B10056.262ENSPEMG00000012352Upf3b9059.453Peromyscus_maniculatus_bairdii
ENSLACG00000008691UPF3B7464.356ENSPCIG00000019590-6774.684Phascolarctos_cinereus
ENSLACG00000008691UPF3B9363.678ENSPCIG00000028914UPF3B8954.691Phascolarctos_cinereus
ENSLACG00000008691UPF3B10058.491ENSPLAG00000005105upf3b10059.873Poecilia_latipinna
ENSLACG00000008691UPF3B8952.594ENSPLAG00000011960upf3a8749.664Poecilia_latipinna
ENSLACG00000008691UPF3B10058.491ENSPLAG00000019922upf3b10059.873Poecilia_latipinna
ENSLACG00000008691UPF3B6076.316ENSPMEG00000000836upf3a5868.000Poecilia_mexicana
ENSLACG00000008691UPF3B10058.491ENSPMEG00000023532upf3b10059.873Poecilia_mexicana
ENSLACG00000008691UPF3B8950.824ENSPPYG00000005536UPF3A8244.737Pongo_abelii
ENSLACG00000008691UPF3B6568.613ENSPPYG00000020675-7769.082Pongo_abelii
ENSLACG00000008691UPF3B10056.693ENSPCAG00000009464UPF3B9058.991Procavia_capensis
ENSLACG00000008691UPF3B10058.200ENSPCOG00000021960UPF3B7979.747Propithecus_coquereli
ENSLACG00000008691UPF3B10049.304ENSPVAG00000014075UPF3B9049.778Pteropus_vampyrus
ENSLACG00000008691UPF3B9859.275ENSPNYG00000009846upf3b9761.488Pundamilia_nyererei
ENSLACG00000008691UPF3B10061.263ENSPNAG00000021528upf3b10078.378Pygocentrus_nattereri
ENSLACG00000008691UPF3B10056.879ENSRNOG00000039994Upf3b9059.589Rattus_norvegicus
ENSLACG00000008691UPF3B8559.750ENSRBIG00000037219UPF3B10059.000Rhinopithecus_bieti
ENSLACG00000008691UPF3B8750.600ENSRBIG00000034007UPF3A8643.990Rhinopithecus_bieti
ENSLACG00000008691UPF3B8750.839ENSRROG00000012212UPF3A8143.990Rhinopithecus_roxellana
ENSLACG00000008691UPF3B10059.548ENSRROG00000041031UPF3B9469.082Rhinopithecus_roxellana
ENSLACG00000008691UPF3B10057.800ENSSBOG00000019740UPF3B9869.082Saimiri_boliviensis_boliviensis
ENSLACG00000008691UPF3B8046.753ENSSBOG00000029989UPF3A8039.005Saimiri_boliviensis_boliviensis
ENSLACG00000008691UPF3B9156.322ENSSHAG00000009895UPF3A9750.585Sarcophilus_harrisii
ENSLACG00000008691UPF3B9065.566ENSSHAG00000008634UPF3B9858.700Sarcophilus_harrisii
ENSLACG00000008691UPF3B6673.312ENSSFOG00015005614upf3b10060.211Scleropages_formosus
ENSLACG00000008691UPF3B9362.385ENSSMAG00000012913upf3b8478.599Scophthalmus_maximus
ENSLACG00000008691UPF3B8946.809ENSSDUG00000009680upf3a6480.000Seriola_dumerili
ENSLACG00000008691UPF3B10062.712ENSSDUG00000005682upf3b10062.076Seriola_dumerili
ENSLACG00000008691UPF3B10062.712ENSSLDG00000003130upf3b10062.076Seriola_lalandi_dorsalis
ENSLACG00000008691UPF3B9259.382ENSSARG00000004147UPF3B10058.499Sorex_araneus
ENSLACG00000008691UPF3B9961.885ENSSPUG00000013082UPF3B9960.780Sphenodon_punctatus
ENSLACG00000008691UPF3B9961.216ENSSPAG00000009989upf3b9762.227Stegastes_partitus
ENSLACG00000008691UPF3B10058.200ENSSSCG00000012617UPF3B9062.100Sus_scrofa
ENSLACG00000008691UPF3B9348.879ENSSSCG00000024679UPF3A8242.009Sus_scrofa
ENSLACG00000008691UPF3B9167.674ENSTGUG00000003413UPF3B9965.349Taeniopygia_guttata
ENSLACG00000008691UPF3B8758.010ENSTGUG00000009493UPF3A9848.662Taeniopygia_guttata
ENSLACG00000008691UPF3B10059.375ENSTRUG00000010645upf3b10058.664Takifugu_rubripes
ENSLACG00000008691UPF3B10053.320ENSTNIG00000015763upf3b10047.718Tetraodon_nigroviridis
ENSLACG00000008691UPF3B10047.337ENSTBEG00000003229UPF3B5560.127Tupaia_belangeri
ENSLACG00000008691UPF3B10057.959ENSUAMG00000024565UPF3B7176.923Ursus_americanus
ENSLACG00000008691UPF3B9358.980ENSUMAG00000002150UPF3B9153.061Ursus_maritimus
ENSLACG00000008691UPF3B8857.631ENSVPAG00000009971UPF3B10058.451Vicugna_pacos
ENSLACG00000008691UPF3B10058.045ENSVVUG00000011594UPF3B7479.747Vulpes_vulpes
ENSLACG00000008691UPF3B9757.759ENSXETG00000007440upf3b8380.729Xenopus_tropicalis
ENSLACG00000008691UPF3B8750.000ENSXETG00000002572upf3a8946.394Xenopus_tropicalis
ENSLACG00000008691UPF3B6276.000ENSXCOG00000018591upf3a5765.000Xiphophorus_couchianus
ENSLACG00000008691UPF3B10054.507ENSXCOG00000016586upf3b9676.684Xiphophorus_couchianus
ENSLACG00000008691UPF3B6176.000ENSXMAG00000013452upf3a5965.000Xiphophorus_maculatus
ENSLACG00000008691UPF3B10057.862ENSXMAG00000013680upf3b9659.603Xiphophorus_maculatus

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