EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000009005 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 27636 bases
Position: chrJH127700.1:386763-414398
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000010223	zf-C2H2	PF00096.26	7.9e-45	1	6
ENSLACP00000010223	zf-C2H2	PF00096.26	7.9e-45	2	6
ENSLACP00000010223	zf-C2H2	PF00096.26	7.9e-45	3	6
ENSLACP00000010223	zf-C2H2	PF00096.26	7.9e-45	4	6
ENSLACP00000010223	zf-C2H2	PF00096.26	7.9e-45	5	6
ENSLACP00000010223	zf-C2H2	PF00096.26	7.9e-45	6	6
ENSLACP00000010222	zf-C2H2	PF00096.26	3.8e-44	1	6
ENSLACP00000010222	zf-C2H2	PF00096.26	3.8e-44	2	6
ENSLACP00000010222	zf-C2H2	PF00096.26	3.8e-44	3	6
ENSLACP00000010222	zf-C2H2	PF00096.26	3.8e-44	4	6
ENSLACP00000010222	zf-C2H2	PF00096.26	3.8e-44	5	6
ENSLACP00000010222	zf-C2H2	PF00096.26	3.8e-44	6	6
ENSLACP00000010224	zf-C2H2	PF00096.26	6.2e-39	1	5
ENSLACP00000010224	zf-C2H2	PF00096.26	6.2e-39	2	5
ENSLACP00000010224	zf-C2H2	PF00096.26	6.2e-39	3	5
ENSLACP00000010224	zf-C2H2	PF00096.26	6.2e-39	4	5
ENSLACP00000010224	zf-C2H2	PF00096.26	6.2e-39	5	5
ENSLACP00000010223	zf-met	PF12874.7	6.9e-16	1	3
ENSLACP00000010223	zf-met	PF12874.7	6.9e-16	2	3
ENSLACP00000010223	zf-met	PF12874.7	6.9e-16	3	3
ENSLACP00000010222	zf-met	PF12874.7	8.4e-15	1	2
ENSLACP00000010222	zf-met	PF12874.7	8.4e-15	2	2
ENSLACP00000010224	zf-met	PF12874.7	2.8e-13	1	3
ENSLACP00000010224	zf-met	PF12874.7	2.8e-13	2	3
ENSLACP00000010224	zf-met	PF12874.7	2.8e-13	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000010300	-	939	-	ENSLACP00000010223	313 (aa)	-	H3AKQ2
ENSLACT00000010301	-	909	-	ENSLACP00000010224	303 (aa)	-	H3AKQ3
ENSLACT00000010299	-	1014	-	ENSLACP00000010222	338 (aa)	-	H3AKQ1

Gene Model

Click here to download ENSLACG00000009005's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000009005's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000009005	-	99	34.286	ENSLACG00000011466	ZBTB24	57	50.000
ENSLACG00000009005	-	99	35.465	ENSLACG00000010143	ZNF384	59	35.465
ENSLACG00000009005	-	100	41.237	ENSLACG00000010627	ZNF236	57	41.237
ENSLACG00000009005	-	99	37.736	ENSLACG00000003588	SCRT1	51	34.307
ENSLACG00000009005	-	99	31.760	ENSLACG00000003626	ZBTB41	51	31.760
ENSLACG00000009005	-	99	42.202	ENSLACG00000012207	GFI1B	59	39.535
ENSLACG00000009005	-	100	37.658	ENSLACG00000000891	ZNF319	90	37.658
ENSLACG00000009005	-	100	39.716	ENSLACG00000017590	-	57	39.716
ENSLACG00000009005	-	100	39.640	ENSLACG00000017707	SNAI1	58	39.640
ENSLACG00000009005	-	99	40.367	ENSLACG00000011224	ZBTB14	50	37.008
ENSLACG00000009005	-	100	36.296	ENSLACG00000009642	-	99	36.296
ENSLACG00000009005	-	99	43.750	ENSLACG00000017381	-	99	40.845
ENSLACG00000009005	-	100	34.539	ENSLACG00000009187	PRDM5	80	33.754
ENSLACG00000009005	-	100	37.615	ENSLACG00000005413	snai2	58	35.507
ENSLACG00000009005	-	100	33.824	ENSLACG00000007310	-	100	33.607
ENSLACG00000009005	-	100	33.577	ENSLACG00000003033	ZNF628	50	33.577
ENSLACG00000009005	-	98	52.381	ENSLACG00000010025	ZNF581	80	52.381
ENSLACG00000009005	-	100	41.961	ENSLACG00000014708	-	60	41.961
ENSLACG00000009005	-	99	37.903	ENSLACG00000004191	-	78	37.671
ENSLACG00000009005	-	100	30.519	ENSLACG00000010161	MAZ	81	31.098
ENSLACG00000009005	-	99	31.122	ENSLACG00000007021	ZNF521	96	31.122
ENSLACG00000009005	-	100	34.505	ENSLACG00000005264	-	97	34.505
ENSLACG00000009005	-	100	41.379	ENSLACG00000022211	-	82	38.384

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000009005	-	100	38.182	ENSACAG00000024898	-	98	38.182	Anolis_carolinensis
ENSLACG00000009005	-	99	39.583	ENSACAG00000008664	-	70	39.583	Anolis_carolinensis
ENSLACG00000009005	-	100	37.555	ENSACAG00000024956	-	84	36.905	Anolis_carolinensis
ENSLACG00000009005	-	99	43.265	ENSAMXG00000010805	-	96	43.265	Astyanax_mexicanus
ENSLACG00000009005	-	100	40.606	ENSAMXG00000038325	-	96	39.080	Astyanax_mexicanus
ENSLACG00000009005	-	99	38.436	ENSAMXG00000038636	-	97	38.077	Astyanax_mexicanus
ENSLACG00000009005	-	96	41.593	ENSAMXG00000042784	-	99	41.026	Astyanax_mexicanus
ENSLACG00000009005	-	100	41.026	ENSAMXG00000032841	-	76	41.026	Astyanax_mexicanus
ENSLACG00000009005	-	100	39.117	ENSAMXG00000025452	-	99	37.175	Astyanax_mexicanus
ENSLACG00000009005	-	100	38.462	ENSAMXG00000036233	-	96	39.209	Astyanax_mexicanus
ENSLACG00000009005	-	100	40.417	ENSAMXG00000034847	-	85	40.417	Astyanax_mexicanus
ENSLACG00000009005	-	100	44.578	ENSAMXG00000038536	-	85	43.671	Astyanax_mexicanus
ENSLACG00000009005	-	100	43.976	ENSAMXG00000042746	-	86	43.976	Astyanax_mexicanus
ENSLACG00000009005	-	100	40.000	ENSAMXG00000034344	-	87	39.884	Astyanax_mexicanus
ENSLACG00000009005	-	100	37.838	ENSAMXG00000035246	-	71	35.714	Astyanax_mexicanus
ENSLACG00000009005	-	100	34.615	ENSBTAG00000038322	-	78	34.615	Bos_taurus
ENSLACG00000009005	-	100	35.955	ENSCPBG00000013652	-	69	35.581	Chrysemys_picta_bellii
ENSLACG00000009005	-	99	36.596	ENSCPBG00000008580	-	75	36.596	Chrysemys_picta_bellii
ENSLACG00000009005	-	100	38.732	ENSCPBG00000001526	-	87	34.973	Chrysemys_picta_bellii
ENSLACG00000009005	-	99	40.230	ENSCPBG00000026433	-	57	40.230	Chrysemys_picta_bellii
ENSLACG00000009005	-	100	37.931	ENSCSAVG00000010960	-	99	38.406	Ciona_savignyi
ENSLACG00000009005	-	100	35.315	ENSDNOG00000047495	-	79	35.315	Dasypus_novemcinctus
ENSLACG00000009005	-	100	39.453	ENSEBUG00000015837	-	77	39.453	Eptatretus_burgeri
ENSLACG00000009005	-	100	37.736	ENSEBUG00000008306	-	87	36.400	Eptatretus_burgeri
ENSLACG00000009005	-	99	38.261	ENSEBUG00000012919	-	79	35.959	Eptatretus_burgeri
ENSLACG00000009005	-	100	35.862	ENSEBUG00000005264	-	74	35.862	Eptatretus_burgeri
ENSLACG00000009005	-	100	37.179	ENSEBUG00000014717	-	74	35.673	Eptatretus_burgeri
ENSLACG00000009005	-	100	36.741	ENSEBUG00000002075	-	78	36.741	Eptatretus_burgeri
ENSLACG00000009005	-	100	34.799	ENSEBUG00000011694	-	99	35.045	Eptatretus_burgeri
ENSLACG00000009005	-	100	40.000	ENSEBUG00000011435	-	90	37.647	Eptatretus_burgeri
ENSLACG00000009005	-	100	34.211	ENSEBUG00000013875	-	86	34.218	Eptatretus_burgeri
ENSLACG00000009005	-	100	33.654	ENSEASG00005004469	-	70	35.664	Equus_asinus_asinus
ENSLACG00000009005	-	100	37.557	ENSGMOG00000018506	-	100	37.557	Gadus_morhua
ENSLACG00000009005	-	100	37.113	ENSGALG00000049609	-	57	37.037	Gallus_gallus
ENSLACG00000009005	-	100	40.514	ENSGALG00000054325	-	99	40.514	Gallus_gallus
ENSLACG00000009005	-	100	40.138	ENSGALG00000044069	-	57	40.138	Gallus_gallus
ENSLACG00000009005	-	99	40.948	ENSGALG00000046336	-	99	40.948	Gallus_gallus
ENSLACG00000009005	-	100	40.143	ENSGALG00000053507	-	81	40.143	Gallus_gallus
ENSLACG00000009005	-	100	39.689	ENSGALG00000055127	-	80	38.158	Gallus_gallus
ENSLACG00000009005	-	100	39.706	ENSGACG00000006283	-	95	36.170	Gasterosteus_aculeatus
ENSLACG00000009005	-	100	36.842	ENSGAGG00000018885	-	66	36.986	Gopherus_agassizii
ENSLACG00000009005	-	100	45.890	ENSGAGG00000011399	-	97	44.068	Gopherus_agassizii
ENSLACG00000009005	-	100	36.290	ENSGAGG00000011366	-	92	36.290	Gopherus_agassizii
ENSLACG00000009005	-	99	36.111	ENSHCOG00000018201	-	93	37.589	Hippocampus_comes
ENSLACG00000009005	-	100	40.972	ENSIPUG00000015468	-	95	36.755	Ictalurus_punctatus
ENSLACG00000009005	-	100	38.182	ENSIPUG00000021515	-	85	38.095	Ictalurus_punctatus
ENSLACG00000009005	-	100	32.278	ENSIPUG00000012109	ZN12	51	31.563	Ictalurus_punctatus
ENSLACG00000009005	-	100	40.171	ENSJJAG00000023633	Zfp672	90	40.171	Jaculus_jaculus
ENSLACG00000009005	-	99	36.713	ENSLOCG00000017864	-	100	36.713	Lepisosteus_oculatus
ENSLACG00000009005	-	100	40.234	ENSMGAG00000013362	-	100	40.602	Meleagris_gallopavo
ENSLACG00000009005	-	100	37.884	ENSMAUG00000009945	Zfp672	89	41.991	Mesocricetus_auratus
ENSLACG00000009005	-	100	40.367	ENSMMOG00000003923	-	91	40.367	Mola_mola
ENSLACG00000009005	-	100	37.768	ENSMODG00000010532	-	85	37.768	Monodelphis_domestica
ENSLACG00000009005	-	100	38.356	ENSMODG00000014052	-	100	38.732	Monodelphis_domestica
ENSLACG00000009005	-	100	36.860	ENSMODG00000001880	-	80	36.860	Monodelphis_domestica
ENSLACG00000009005	-	100	38.435	MGP_CAROLIEiJ_G0016391	Zfp672	93	42.667	Mus_caroli
ENSLACG00000009005	-	98	40.773	MGP_CAROLIEiJ_G0030502	-	72	40.773	Mus_caroli
ENSLACG00000009005	-	100	38.435	ENSMUSG00000049755	Zfp672	93	42.667	Mus_musculus
ENSLACG00000009005	-	98	38.636	ENSMUSG00000030823	9130019O22Rik	78	38.636	Mus_musculus
ENSLACG00000009005	-	100	38.435	MGP_SPRETEiJ_G0017233	Zfp672	93	41.558	Mus_spretus
ENSLACG00000009005	-	100	39.485	MGP_SPRETEiJ_G0031613	-	86	39.485	Mus_spretus
ENSLACG00000009005	-	99	38.376	ENSNGAG00000015777	Zim1	62	38.376	Nannospalax_galili
ENSLACG00000009005	-	100	41.379	ENSNBRG00000000708	-	91	38.983	Neolamprologus_brichardi
ENSLACG00000009005	-	100	40.678	ENSORLG00020001922	-	92	40.714	Oryzias_latipes_hni
ENSLACG00000009005	-	100	38.144	ENSOMEG00000001598	-	62	38.144	Oryzias_melastigma
ENSLACG00000009005	-	100	40.969	ENSPSIG00000010328	-	70	40.969	Pelodiscus_sinensis
ENSLACG00000009005	-	99	40.611	ENSPSIG00000013021	-	87	42.918	Pelodiscus_sinensis
ENSLACG00000009005	-	100	40.370	ENSPSIG00000016380	-	71	40.370	Pelodiscus_sinensis
ENSLACG00000009005	-	100	36.842	ENSPSIG00000000672	-	91	37.652	Pelodiscus_sinensis
ENSLACG00000009005	-	99	39.409	ENSPSIG00000004502	-	58	39.409	Pelodiscus_sinensis
ENSLACG00000009005	-	99	44.498	ENSPSIG00000010248	-	70	39.073	Pelodiscus_sinensis
ENSLACG00000009005	-	100	36.996	ENSPSIG00000012650	-	74	36.364	Pelodiscus_sinensis
ENSLACG00000009005	-	99	39.552	ENSPSIG00000003152	-	81	37.354	Pelodiscus_sinensis
ENSLACG00000009005	-	100	41.606	ENSPSIG00000005603	-	71	42.387	Pelodiscus_sinensis
ENSLACG00000009005	-	99	41.423	ENSPSIG00000005672	-	73	41.423	Pelodiscus_sinensis
ENSLACG00000009005	-	100	42.623	ENSPSIG00000015459	-	73	41.102	Pelodiscus_sinensis
ENSLACG00000009005	-	100	36.179	ENSPSIG00000006586	-	99	36.179	Pelodiscus_sinensis
ENSLACG00000009005	-	98	42.405	ENSPSIG00000006790	-	91	42.405	Pelodiscus_sinensis
ENSLACG00000009005	-	100	35.849	ENSPREG00000002642	-	95	34.294	Poecilia_reticulata
ENSLACG00000009005	-	99	41.525	ENSPNYG00000015486	-	61	41.525	Pundamilia_nyererei
ENSLACG00000009005	-	100	38.991	ENSPNAG00000018395	-	64	37.895	Pygocentrus_nattereri
ENSLACG00000009005	-	100	42.361	ENSPNAG00000000088	-	95	42.361	Pygocentrus_nattereri
ENSLACG00000009005	-	100	36.223	ENSRNOG00000002713	Zfp672	88	40.693	Rattus_norvegicus
ENSLACG00000009005	-	100	36.025	ENSSHAG00000018106	-	75	37.600	Sarcophilus_harrisii
ENSLACG00000009005	-	100	39.103	ENSSFOG00015019818	-	90	38.989	Scleropages_formosus
ENSLACG00000009005	-	100	35.409	ENSSMAG00000004252	-	85	35.409	Scophthalmus_maximus
ENSLACG00000009005	-	100	38.028	ENSSPUG00000010016	-	98	37.903	Sphenodon_punctatus
ENSLACG00000009005	-	99	42.353	ENSSPUG00000004366	-	61	42.353	Sphenodon_punctatus
ENSLACG00000009005	-	99	43.373	ENSSPAG00000021653	-	96	40.650	Stegastes_partitus
ENSLACG00000009005	-	99	45.631	ENSTGUG00000018351	-	100	45.631	Taeniopygia_guttata
ENSLACG00000009005	-	100	41.328	ENSTGUG00000015210	-	100	41.135	Taeniopygia_guttata
ENSLACG00000009005	-	100	38.830	ENSTRUG00000022066	-	96	35.345	Takifugu_rubripes
ENSLACG00000009005	-	99	38.462	ENSXETG00000031192	-	100	35.211	Xenopus_tropicalis
ENSLACG00000009005	-	100	39.241	ENSXCOG00000006553	-	87	39.241	Xiphophorus_couchianus
ENSLACG00000009005	-	100	38.222	ENSXMAG00000026680	-	83	38.222	Xiphophorus_maculatus