EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000009020 (Gene tree)
Gene ID: 102350811
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 59972 bases
Position: chrJH127415.1:387598-447569
Accession: 102350811
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000010239	XRN_N	PF03159.18	8.7e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000010317	XRN1-201	5390	XM_006002776	ENSLACP00000010239	1737 (aa)	XP_006002838	H3AKR8

Gene Model

Click here to download ENSLACG00000009020's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03008	Ribosome biogenesis in eukaryotes	KEGG
lcm03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000009020's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000009020	XRN1	100	69.454	ENSG00000114127	XRN1	96	98.058	Homo_sapiens
ENSLACG00000009020	XRN1	94	72.276	ENSAPOG00000000622	xrn1	99	72.276	Acanthochromis_polyacanthus
ENSLACG00000009020	XRN1	97	70.588	ENSAMEG00000012538	XRN1	100	69.694	Ailuropoda_melanoleuca
ENSLACG00000009020	XRN1	93	71.961	ENSACIG00000001057	xrn1	98	71.961	Amphilophus_citrinellus
ENSLACG00000009020	XRN1	96	70.667	ENSAOCG00000014097	xrn1	100	70.667	Amphiprion_ocellaris
ENSLACG00000009020	XRN1	100	60.487	ENSAPEG00000006620	xrn1	92	71.801	Amphiprion_percula
ENSLACG00000009020	XRN1	92	70.830	ENSATEG00000009752	xrn1	99	70.830	Anabas_testudineus
ENSLACG00000009020	XRN1	99	71.965	ENSAPLG00000004905	XRN1	100	71.933	Anas_platyrhynchos
ENSLACG00000009020	XRN1	100	68.624	ENSACAG00000004985	XRN1	100	68.809	Anolis_carolinensis
ENSLACG00000009020	XRN1	100	69.113	ENSANAG00000029013	XRN1	99	80.688	Aotus_nancymaae
ENSLACG00000009020	XRN1	99	60.382	ENSACLG00000004806	xrn1	99	60.303	Astatotilapia_calliptera
ENSLACG00000009020	XRN1	99	63.537	ENSAMXG00000019370	xrn1	95	96.117	Astyanax_mexicanus
ENSLACG00000009020	XRN1	100	68.605	ENSBTAG00000011524	XRN1	100	68.754	Bos_taurus
ENSLACG00000009020	XRN1	69	38.218	WBGene00012730	xrn-1	81	37.874	Caenorhabditis_elegans
ENSLACG00000009020	XRN1	100	69.226	ENSCJAG00000001872	XRN1	100	70.772	Callithrix_jacchus
ENSLACG00000009020	XRN1	96	71.700	ENSCAFG00000007783	XRN1	100	70.394	Canis_familiaris
ENSLACG00000009020	XRN1	96	71.760	ENSCAFG00020009120	XRN1	99	81.732	Canis_lupus_dingo
ENSLACG00000009020	XRN1	99	69.771	ENSCHIG00000019192	XRN1	99	69.858	Capra_hircus
ENSLACG00000009020	XRN1	100	69.099	ENSTSYG00000002705	XRN1	100	69.270	Carlito_syrichta
ENSLACG00000009020	XRN1	100	69.205	ENSCCAG00000034800	XRN1	99	84.127	Cebus_capucinus
ENSLACG00000009020	XRN1	97	71.150	ENSCATG00000041794	XRN1	100	70.046	Cercocebus_atys
ENSLACG00000009020	XRN1	100	68.686	ENSCLAG00000001451	XRN1	99	84.603	Chinchilla_lanigera
ENSLACG00000009020	XRN1	97	70.609	ENSCSAG00000011265	XRN1	100	69.531	Chlorocebus_sabaeus
ENSLACG00000009020	XRN1	59	97.403	ENSCHOG00000013961	-	62	97.403	Choloepus_hoffmanni
ENSLACG00000009020	XRN1	69	45.788	ENSCSAVG00000008584	-	98	45.788	Ciona_savignyi
ENSLACG00000009020	XRN1	97	70.855	ENSCANG00000037495	XRN1	99	84.127	Colobus_angolensis_palliatus
ENSLACG00000009020	XRN1	100	69.279	ENSCGRG00001019411	Xrn1	99	83.968	Cricetulus_griseus_chok1gshd
ENSLACG00000009020	XRN1	100	69.279	ENSCGRG00000012464	Xrn1	99	83.968	Cricetulus_griseus_crigri
ENSLACG00000009020	XRN1	87	67.177	ENSCSEG00000021285	xrn1	94	97.115	Cynoglossus_semilaevis
ENSLACG00000009020	XRN1	65	72.856	ENSCVAG00000013089	xrn1	99	72.944	Cyprinodon_variegatus
ENSLACG00000009020	XRN1	99	63.391	ENSDARG00000091652	xrn1	98	79.915	Danio_rerio
ENSLACG00000009020	XRN1	100	69.332	ENSDORG00000013833	Xrn1	100	69.863	Dipodomys_ordii
ENSLACG00000009020	XRN1	71	40.000	FBgn0020261	pcm	74	40.157	Drosophila_melanogaster
ENSLACG00000009020	XRN1	86	82.883	ENSETEG00000003978	XRN1	88	83.871	Echinops_telfairi
ENSLACG00000009020	XRN1	97	71.082	ENSEASG00005002687	XRN1	99	84.603	Equus_asinus_asinus
ENSLACG00000009020	XRN1	97	70.423	ENSECAG00000008301	XRN1	100	69.422	Equus_caballus
ENSLACG00000009020	XRN1	92	71.624	ENSEEUG00000011323	XRN1	92	71.624	Erinaceus_europaeus
ENSLACG00000009020	XRN1	99	63.371	ENSELUG00000000169	xrn1	99	63.580	Esox_lucius
ENSLACG00000009020	XRN1	100	65.812	ENSFCAG00000027589	XRN1	99	85.495	Felis_catus
ENSLACG00000009020	XRN1	100	70.526	ENSFALG00000007021	XRN1	100	70.470	Ficedula_albicollis
ENSLACG00000009020	XRN1	100	68.409	ENSFDAG00000020494	XRN1	99	83.810	Fukomys_damarensis
ENSLACG00000009020	XRN1	81	68.850	ENSGMOG00000006396	xrn1	83	69.270	Gadus_morhua
ENSLACG00000009020	XRN1	99	70.852	ENSGALG00000002706	XRN1	99	70.852	Gallus_gallus
ENSLACG00000009020	XRN1	100	60.838	ENSGACG00000014328	xrn1	100	60.724	Gasterosteus_aculeatus
ENSLACG00000009020	XRN1	94	74.788	ENSGAGG00000017535	XRN1	99	74.788	Gopherus_agassizii
ENSLACG00000009020	XRN1	100	69.795	ENSGGOG00000008047	XRN1	100	69.926	Gorilla_gorilla
ENSLACG00000009020	XRN1	94	70.370	ENSHBUG00000005908	xrn1	98	72.428	Haplochromis_burtoni
ENSLACG00000009020	XRN1	100	69.590	ENSHGLG00000014476	XRN1	99	84.444	Heterocephalus_glaber_female
ENSLACG00000009020	XRN1	100	69.590	ENSHGLG00100015130	XRN1	99	84.444	Heterocephalus_glaber_male
ENSLACG00000009020	XRN1	93	70.640	ENSHCOG00000014062	xrn1	99	70.640	Hippocampus_comes
ENSLACG00000009020	XRN1	99	61.867	ENSIPUG00000015229	xrn1	99	62.092	Ictalurus_punctatus
ENSLACG00000009020	XRN1	100	69.327	ENSSTOG00000013552	XRN1	99	83.810	Ictidomys_tridecemlineatus
ENSLACG00000009020	XRN1	99	68.519	ENSJJAG00000010863	Xrn1	99	83.140	Jaculus_jaculus
ENSLACG00000009020	XRN1	100	58.380	ENSKMAG00000021356	xrn1	94	75.264	Kryptolebias_marmoratus
ENSLACG00000009020	XRN1	100	60.158	ENSLBEG00000018656	xrn1	97	98.058	Labrus_bergylta
ENSLACG00000009020	XRN1	99	67.265	ENSLOCG00000007944	xrn1	99	67.265	Lepisosteus_oculatus
ENSLACG00000009020	XRN1	61	80.543	ENSLAFG00000015426	XRN1	100	80.543	Loxodonta_africana
ENSLACG00000009020	XRN1	97	71.091	ENSMFAG00000032599	XRN1	100	69.989	Macaca_fascicularis
ENSLACG00000009020	XRN1	97	71.091	ENSMMUG00000014038	XRN1	100	69.989	Macaca_mulatta
ENSLACG00000009020	XRN1	97	71.032	ENSMNEG00000034217	XRN1	100	69.932	Macaca_nemestrina
ENSLACG00000009020	XRN1	92	70.785	ENSMAMG00000013219	xrn1	92	77.919	Mastacembelus_armatus
ENSLACG00000009020	XRN1	99	60.382	ENSMZEG00005015099	xrn1	99	60.247	Maylandia_zebra
ENSLACG00000009020	XRN1	99	70.469	ENSMGAG00000006333	XRN1	99	70.435	Meleagris_gallopavo
ENSLACG00000009020	XRN1	100	69.165	ENSMICG00000048948	XRN1	96	98.058	Microcebus_murinus
ENSLACG00000009020	XRN1	56	83.968	ENSMOCG00000008665	Xrn1	99	83.968	Microtus_ochrogaster
ENSLACG00000009020	XRN1	100	69.989	ENSMODG00000021236	XRN1	100	70.023	Monodelphis_domestica
ENSLACG00000009020	XRN1	100	57.378	ENSMALG00000004098	xrn1	100	56.908	Monopterus_albus
ENSLACG00000009020	XRN1	100	64.408	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSLACG00000009020	XRN1	100	68.547	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSLACG00000009020	XRN1	100	69.011	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSLACG00000009020	XRN1	100	68.433	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSLACG00000009020	XRN1	97	70.246	ENSMPUG00000012040	XRN1	100	69.479	Mustela_putorius_furo
ENSLACG00000009020	XRN1	100	69.178	ENSMLUG00000016885	XRN1	100	68.746	Myotis_lucifugus
ENSLACG00000009020	XRN1	56	79.650	ENSNGAG00000023964	Xrn1	99	79.809	Nannospalax_galili
ENSLACG00000009020	XRN1	97	70.973	ENSNLEG00000004726	XRN1	100	70.046	Nomascus_leucogenys
ENSLACG00000009020	XRN1	70	98.969	ENSMEUG00000014473	-	72	99.029	Notamacropus_eugenii
ENSLACG00000009020	XRN1	75	71.930	ENSOPRG00000007337	-	76	72.089	Ochotona_princeps
ENSLACG00000009020	XRN1	100	61.058	ENSONIG00000016673	xrn1	99	64.408	Oreochromis_niloticus
ENSLACG00000009020	XRN1	92	66.523	ENSOANG00000006735	XRN1	99	66.831	Ornithorhynchus_anatinus
ENSLACG00000009020	XRN1	100	69.870	ENSOCUG00000001861	XRN1	100	69.813	Oryctolagus_cuniculus
ENSLACG00000009020	XRN1	95	71.542	ENSORLG00000013005	xrn1	98	61.983	Oryzias_latipes
ENSLACG00000009020	XRN1	95	71.665	ENSORLG00020005559	xrn1	99	71.665	Oryzias_latipes_hni
ENSLACG00000009020	XRN1	100	61.020	ENSORLG00015022523	xrn1	100	61.530	Oryzias_latipes_hsok
ENSLACG00000009020	XRN1	93	72.947	ENSOMEG00000015397	xrn1	100	73.049	Oryzias_melastigma
ENSLACG00000009020	XRN1	100	67.101	ENSOGAG00000000170	XRN1	100	67.158	Otolemur_garnettii
ENSLACG00000009020	XRN1	99	69.422	ENSOARG00000006343	XRN1	99	69.396	Ovis_aries
ENSLACG00000009020	XRN1	100	69.778	ENSPPAG00000010180	XRN1	100	69.818	Pan_paniscus
ENSLACG00000009020	XRN1	100	69.345	ENSPPRG00000007125	XRN1	100	70.068	Panthera_pardus
ENSLACG00000009020	XRN1	100	69.288	ENSPTIG00000021081	XRN1	100	69.875	Panthera_tigris_altaica
ENSLACG00000009020	XRN1	100	69.778	ENSPTRG00000015482	XRN1	100	69.818	Pan_troglodytes
ENSLACG00000009020	XRN1	100	69.410	ENSPANG00000010638	XRN1	100	69.932	Papio_anubis
ENSLACG00000009020	XRN1	100	72.061	ENSPSIG00000018050	XRN1	100	72.061	Pelodiscus_sinensis
ENSLACG00000009020	XRN1	56	75.394	ENSPMGG00000002648	xrn1	99	77.918	Periophthalmus_magnuspinnatus
ENSLACG00000009020	XRN1	56	83.492	ENSPEMG00000020610	Xrn1	99	83.492	Peromyscus_maniculatus_bairdii
ENSLACG00000009020	XRN1	61	78.448	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSLACG00000009020	XRN1	96	79.545	ENSPCIG00000028735	XRN1	99	85.056	Phascolarctos_cinereus
ENSLACG00000009020	XRN1	91	64.816	ENSPFOG00000013932	xrn1	99	64.922	Poecilia_formosa
ENSLACG00000009020	XRN1	91	65.122	ENSPLAG00000021653	xrn1	99	65.188	Poecilia_latipinna
ENSLACG00000009020	XRN1	89	64.736	ENSPMEG00000003076	xrn1	95	65.140	Poecilia_mexicana
ENSLACG00000009020	XRN1	100	61.577	ENSPREG00000021147	xrn1	100	62.282	Poecilia_reticulata
ENSLACG00000009020	XRN1	100	69.057	ENSPPYG00000014172	XRN1	100	69.135	Pongo_abelii
ENSLACG00000009020	XRN1	83	73.560	ENSPCAG00000005638	XRN1	93	73.560	Procavia_capensis
ENSLACG00000009020	XRN1	100	69.498	ENSPCOG00000013089	XRN1	99	83.651	Propithecus_coquereli
ENSLACG00000009020	XRN1	85	77.730	ENSPVAG00000016265	XRN1	92	77.730	Pteropus_vampyrus
ENSLACG00000009020	XRN1	94	71.046	ENSPNYG00000010570	xrn1	99	71.046	Pundamilia_nyererei
ENSLACG00000009020	XRN1	99	62.828	ENSPNAG00000023531	xrn1	99	62.372	Pygocentrus_nattereri
ENSLACG00000009020	XRN1	100	68.427	ENSRNOG00000042951	Xrn1	100	68.597	Rattus_norvegicus
ENSLACG00000009020	XRN1	97	70.442	ENSRBIG00000041227	XRN1	100	68.995	Rhinopithecus_bieti
ENSLACG00000009020	XRN1	70	34.015	YGL173C	XRN1	83	34.193	Saccharomyces_cerevisiae
ENSLACG00000009020	XRN1	100	69.226	ENSSBOG00000029561	XRN1	100	69.697	Saimiri_boliviensis_boliviensis
ENSLACG00000009020	XRN1	99	70.405	ENSSHAG00000016207	XRN1	100	70.636	Sarcophilus_harrisii
ENSLACG00000009020	XRN1	100	63.396	ENSSFOG00015024211	xrn1	100	63.224	Scleropages_formosus
ENSLACG00000009020	XRN1	91	72.311	ENSSMAG00000016534	xrn1	97	72.311	Scophthalmus_maximus
ENSLACG00000009020	XRN1	88	72.263	ENSSDUG00000010306	xrn1	97	72.263	Seriola_dumerili
ENSLACG00000009020	XRN1	92	71.216	ENSSLDG00000021543	xrn1	99	71.216	Seriola_lalandi_dorsalis
ENSLACG00000009020	XRN1	65	73.423	ENSSARG00000007741	-	81	73.423	Sorex_araneus
ENSLACG00000009020	XRN1	100	72.057	ENSTGUG00000008498	XRN1	100	72.000	Taeniopygia_guttata
ENSLACG00000009020	XRN1	94	69.225	ENSTRUG00000004895	xrn1	96	77.399	Takifugu_rubripes
ENSLACG00000009020	XRN1	100	57.766	ENSTNIG00000017615	xrn1	100	58.050	Tetraodon_nigroviridis
ENSLACG00000009020	XRN1	76	88.441	ENSTBEG00000003256	XRN1	88	76.518	Tupaia_belangeri
ENSLACG00000009020	XRN1	100	65.249	ENSTTRG00000012914	XRN1	100	65.513	Tursiops_truncatus
ENSLACG00000009020	XRN1	97	69.640	ENSUAMG00000001608	XRN1	99	80.635	Ursus_americanus
ENSLACG00000009020	XRN1	97	71.209	ENSUMAG00000013625	XRN1	100	70.364	Ursus_maritimus
ENSLACG00000009020	XRN1	100	66.232	ENSVPAG00000004690	XRN1	100	66.629	Vicugna_pacos
ENSLACG00000009020	XRN1	97	71.099	ENSVVUG00000024461	XRN1	98	90.000	Vulpes_vulpes
ENSLACG00000009020	XRN1	100	66.742	ENSXETG00000000619	xrn1	99	88.021	Xenopus_tropicalis
ENSLACG00000009020	XRN1	93	71.974	ENSXCOG00000007917	xrn1	96	72.299	Xiphophorus_couchianus
ENSLACG00000009020	XRN1	94	71.812	ENSXMAG00000018320	xrn1	100	72.055	Xiphophorus_maculatus