EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000009389 (Gene tree)
Gene ID: 102366451
Gene Symbol: -
Alias: -
Full Name: serine and arginine rich splicing factor 4
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 12994 bases
Position: chrJH127749.1:416916-429909
Accession: 102366451
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000010660	RRM_1	PF00076.22	1.9e-32	1	2
ENSLACP00000010660	RRM_1	PF00076.22	1.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000010739	-	4919	XM_006005380	ENSLACP00000010660	491 (aa)	XP_006005442	H3ALY9

Gene Model

Click here to download ENSLACG00000009389's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG
lcm05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000009389's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000009389	-	61	59.317	ENSLACG00000005466	SRSF6	54	80.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000009389	-	62	59.105	ENSACIG00000023658	-	55	79.213	Amphilophus_citrinellus
ENSLACG00000009389	-	63	57.962	ENSFHEG00000023065	srsf6a	54	78.022	Fundulus_heteroclitus
ENSLACG00000009389	-	54	63.774	ENSHBUG00000006386	-	57	78.090	Haplochromis_burtoni
ENSLACG00000009389	-	63	57.468	ENSKMAG00000011934	srsf6a	58	80.114	Kryptolebias_marmoratus
ENSLACG00000009389	-	54	66.792	ENSMZEG00005008032	-	56	78.090	Maylandia_zebra
ENSLACG00000009389	-	51	67.063	ENSONIG00000020247	-	53	78.212	Oreochromis_niloticus
ENSLACG00000009389	-	68	68.750	ENSPTIG00000021305	-	64	78.595	Panthera_tigris_altaica
ENSLACG00000009389	-	63	63.975	ENSPKIG00000018463	-	89	72.917	Paramormyrops_kingsleyae
ENSLACG00000009389	-	59	69.492	ENSPCIG00000022430	-	62	70.333	Phascolarctos_cinereus
ENSLACG00000009389	-	54	64.151	ENSPNYG00000004944	-	57	78.090	Pundamilia_nyererei
ENSLACG00000009389	-	51	63.636	ENSSPAG00000002362	srsf6a	66	77.540	Stegastes_partitus
ENSLACG00000009389	-	68	55.425	ENSTNIG00000001692	srsf6a	56	76.630	Tetraodon_nigroviridis