EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000009808 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 18916 bases
Position: chrJH127349.1:450838-469753
Accession: 102361814
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000011146	SMN	PF06003.12	1.7e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000011229	-	1182	XM_006002315	ENSLACP00000011146	304 (aa)	XP_006002377	H3ANC5

Gene Model

Click here to download ENSLACG00000009808's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000009808's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000009808	-	90	38.298	ENSG00000172062	SMN1	93	37.770	Homo_sapiens
ENSLACG00000009808	-	90	38.298	ENSG00000205571	SMN2	78	59.459	Homo_sapiens
ENSLACG00000009808	-	95	35.495	ENSAPOG00000011324	smn1	99	35.880	Acanthochromis_polyacanthus
ENSLACG00000009808	-	90	39.350	ENSAMEG00000003316	-	89	37.324	Ailuropoda_melanoleuca
ENSLACG00000009808	-	88	32.014	ENSACIG00000019772	-	99	33.571	Amphilophus_citrinellus
ENSLACG00000009808	-	95	35.172	ENSAOCG00000024444	smn1	99	35.548	Amphiprion_ocellaris
ENSLACG00000009808	-	95	36.207	ENSAPEG00000016504	smn1	99	35.216	Amphiprion_percula
ENSLACG00000009808	-	89	35.401	ENSATEG00000002182	smn1	81	33.101	Anabas_testudineus
ENSLACG00000009808	-	66	38.049	ENSAPLG00000010912	-	97	40.299	Anas_platyrhynchos
ENSLACG00000009808	-	90	38.545	ENSACAG00000010017	-	93	38.078	Anolis_carolinensis
ENSLACG00000009808	-	95	37.329	ENSANAG00000032133	-	92	38.489	Aotus_nancymaae
ENSLACG00000009808	-	92	35.540	ENSACLG00000007308	smn1	92	33.784	Astatotilapia_calliptera
ENSLACG00000009808	-	93	39.041	ENSBTAG00000005743	SMN2	93	36.842	Bos_taurus
ENSLACG00000009808	-	90	36.131	ENSCJAG00000016290	-	92	37.011	Callithrix_jacchus
ENSLACG00000009808	-	90	38.434	ENSCAFG00000007812	SMN	93	36.268	Canis_familiaris
ENSLACG00000009808	-	90	38.434	ENSCAFG00020019229	-	86	36.268	Canis_lupus_dingo
ENSLACG00000009808	-	90	37.201	ENSCHIG00000015559	-	91	35.959	Capra_hircus
ENSLACG00000009808	-	94	37.966	ENSTSYG00000012058	-	93	35.088	Carlito_syrichta
ENSLACG00000009808	-	69	34.742	ENSCAPG00000011021	-	83	33.962	Cavia_aperea
ENSLACG00000009808	-	97	35.738	ENSCPOG00000012328	-	95	35.690	Cavia_porcellus
ENSLACG00000009808	-	97	35.314	ENSCPOG00000036973	-	94	35.254	Cavia_porcellus
ENSLACG00000009808	-	90	36.131	ENSCCAG00000018127	-	91	35.842	Cebus_capucinus
ENSLACG00000009808	-	90	38.628	ENSCATG00000037002	-	93	37.050	Cercocebus_atys
ENSLACG00000009808	-	96	37.667	ENSCLAG00000000284	-	94	37.288	Chinchilla_lanigera
ENSLACG00000009808	-	90	39.350	ENSCSAG00000015688	-	91	36.972	Chlorocebus_sabaeus
ENSLACG00000009808	-	90	35.231	ENSCPBG00000010968	-	98	36.749	Chrysemys_picta_bellii
ENSLACG00000009808	-	90	39.350	ENSCANG00000038242	-	95	36.429	Colobus_angolensis_palliatus
ENSLACG00000009808	-	95	35.154	ENSCANG00000033324	-	90	39.560	Colobus_angolensis_palliatus
ENSLACG00000009808	-	65	35.500	ENSCGRG00001016998	-	76	35.784	Cricetulus_griseus_chok1gshd
ENSLACG00000009808	-	94	36.806	ENSCGRG00001017959	-	93	36.331	Cricetulus_griseus_chok1gshd
ENSLACG00000009808	-	94	36.806	ENSCGRG00000007698	Smn1	93	36.331	Cricetulus_griseus_crigri
ENSLACG00000009808	-	91	35.274	ENSCSEG00000015227	smn1	98	32.886	Cynoglossus_semilaevis
ENSLACG00000009808	-	95	35.593	ENSCVAG00000007498	smn1	97	36.027	Cyprinodon_variegatus
ENSLACG00000009808	-	95	37.884	ENSDARG00000018494	smn1	100	38.776	Danio_rerio
ENSLACG00000009808	-	80	30.081	ENSDNOG00000045949	-	63	36.986	Dasypus_novemcinctus
ENSLACG00000009808	-	71	37.443	ENSDNOG00000007283	-	83	40.000	Dasypus_novemcinctus
ENSLACG00000009808	-	74	37.719	ENSDORG00000007082	Smn1	75	37.037	Dipodomys_ordii
ENSLACG00000009808	-	59	39.362	ENSETEG00000001406	-	71	41.611	Echinops_telfairi
ENSLACG00000009808	-	91	34.247	ENSEBUG00000011902	smn1	96	32.986	Eptatretus_burgeri
ENSLACG00000009808	-	52	37.736	ENSECAG00000015215	-	93	36.364	Equus_caballus
ENSLACG00000009808	-	84	35.361	ENSEEUG00000015777	-	99	36.090	Erinaceus_europaeus
ENSLACG00000009808	-	94	37.024	ENSELUG00000018067	smn1	99	34.459	Esox_lucius
ENSLACG00000009808	-	93	38.621	ENSFCAG00000028292	SMN	93	38.542	Felis_catus
ENSLACG00000009808	-	89	37.956	ENSFALG00000012320	-	90	36.122	Ficedula_albicollis
ENSLACG00000009808	-	97	36.634	ENSFDAG00000017683	-	94	37.113	Fukomys_damarensis
ENSLACG00000009808	-	88	36.879	ENSFHEG00000018508	smn1	95	33.216	Fundulus_heteroclitus
ENSLACG00000009808	-	95	33.793	ENSGMOG00000017279	smn1	97	34.448	Gadus_morhua
ENSLACG00000009808	-	90	37.722	ENSGALG00000002430	SMN	96	39.080	Gallus_gallus
ENSLACG00000009808	-	95	36.395	ENSGAFG00000009501	smn1	97	36.149	Gambusia_affinis
ENSLACG00000009808	-	95	30.915	ENSGACG00000010584	smn1	97	32.886	Gasterosteus_aculeatus
ENSLACG00000009808	-	52	42.105	ENSGAGG00000013639	-	98	38.922	Gopherus_agassizii
ENSLACG00000009808	-	57	36.723	ENSGAGG00000011374	-	94	37.410	Gopherus_agassizii
ENSLACG00000009808	-	52	38.994	ENSGGOG00000026704	-	73	38.994	Gorilla_gorilla
ENSLACG00000009808	-	89	36.029	ENSGGOG00000003872	-	94	35.316	Gorilla_gorilla
ENSLACG00000009808	-	95	35.714	ENSHBUG00000013987	smn1	99	33.003	Haplochromis_burtoni
ENSLACG00000009808	-	92	36.585	ENSHGLG00000001905	-	96	34.602	Heterocephalus_glaber_female
ENSLACG00000009808	-	96	36.333	ENSHGLG00000001018	-	94	36.082	Heterocephalus_glaber_female
ENSLACG00000009808	-	89	36.691	ENSHGLG00100018676	-	97	34.643	Heterocephalus_glaber_male
ENSLACG00000009808	-	96	36.333	ENSHGLG00100011252	-	94	36.082	Heterocephalus_glaber_male
ENSLACG00000009808	-	88	35.165	ENSHCOG00000017136	smn1	88	31.597	Hippocampus_comes
ENSLACG00000009808	-	95	37.415	ENSIPUG00000012580	smn1	88	35.880	Ictalurus_punctatus
ENSLACG00000009808	-	88	35.926	ENSSTOG00000012288	-	95	34.173	Ictidomys_tridecemlineatus
ENSLACG00000009808	-	94	35.811	ENSKMAG00000007239	smn1	95	35.165	Kryptolebias_marmoratus
ENSLACG00000009808	-	95	36.913	ENSLBEG00000022550	smn1	99	36.519	Labrus_bergylta
ENSLACG00000009808	-	92	32.180	ENSLOCG00000000801	-	91	30.164	Lepisosteus_oculatus
ENSLACG00000009808	-	95	35.836	ENSLOCG00000011339	smn1	99	35.811	Lepisosteus_oculatus
ENSLACG00000009808	-	93	36.301	ENSLAFG00000003425	-	99	34.483	Loxodonta_africana
ENSLACG00000009808	-	90	40.072	ENSMFAG00000031523	SMN1	92	38.662	Macaca_fascicularis
ENSLACG00000009808	-	87	37.687	ENSMFAG00000008812	-	86	37.175	Macaca_fascicularis
ENSLACG00000009808	-	90	40.072	ENSMMUG00000020214	SMN1	93	37.410	Macaca_mulatta
ENSLACG00000009808	-	87	37.313	ENSMMUG00000030594	-	86	36.803	Macaca_mulatta
ENSLACG00000009808	-	73	32.743	ENSMNEG00000036423	-	79	32.243	Macaca_nemestrina
ENSLACG00000009808	-	90	39.350	ENSMNEG00000035094	-	93	37.410	Macaca_nemestrina
ENSLACG00000009808	-	89	40.146	ENSMLEG00000041902	-	93	37.455	Mandrillus_leucophaeus
ENSLACG00000009808	-	95	32.997	ENSMAMG00000011034	smn1	99	34.211	Mastacembelus_armatus
ENSLACG00000009808	-	95	35.714	ENSMZEG00005013634	smn1	99	32.343	Maylandia_zebra
ENSLACG00000009808	-	66	38.537	ENSMGAG00000008889	-	94	34.848	Meleagris_gallopavo
ENSLACG00000009808	-	94	35.069	ENSMAUG00000010262	Smn1	93	36.232	Mesocricetus_auratus
ENSLACG00000009808	-	52	38.365	ENSMICG00000034708	-	70	38.272	Microcebus_murinus
ENSLACG00000009808	-	94	36.111	ENSMOCG00000017833	Smn1	93	36.071	Microtus_ochrogaster
ENSLACG00000009808	-	88	37.132	ENSMMOG00000005504	smn1	94	33.803	Mola_mola
ENSLACG00000009808	-	94	36.824	ENSMODG00000001436	-	92	38.628	Monodelphis_domestica
ENSLACG00000009808	-	95	34.448	ENSMALG00000008025	smn1	97	34.014	Monopterus_albus
ENSLACG00000009808	-	95	35.495	MGP_CAROLIEiJ_G0018836	Smn1	93	36.957	Mus_caroli
ENSLACG00000009808	-	95	35.836	ENSMUSG00000021645	Smn1	93	37.319	Mus_musculus
ENSLACG00000009808	-	55	34.731	MGP_PahariEiJ_G0015911	Smn1	93	35.252	Mus_pahari
ENSLACG00000009808	-	95	35.836	MGP_SPRETEiJ_G0019718	Smn1	93	36.594	Mus_spretus
ENSLACG00000009808	-	93	37.762	ENSMPUG00000014470	-	94	35.231	Mustela_putorius_furo
ENSLACG00000009808	-	93	37.333	ENSMLUG00000010603	-	89	37.722	Myotis_lucifugus
ENSLACG00000009808	-	92	36.972	ENSNGAG00000019833	Smn1	95	34.737	Nannospalax_galili
ENSLACG00000009808	-	95	35.932	ENSNBRG00000023000	smn1	99	34.219	Neolamprologus_brichardi
ENSLACG00000009808	-	95	38.926	ENSNLEG00000004454	-	93	37.770	Nomascus_leucogenys
ENSLACG00000009808	-	63	36.364	ENSMEUG00000011393	-	83	41.026	Notamacropus_eugenii
ENSLACG00000009808	-	84	38.060	ENSOPRG00000002015	-	99	39.768	Ochotona_princeps
ENSLACG00000009808	-	93	37.282	ENSODEG00000015976	-	93	34.892	Octodon_degus
ENSLACG00000009808	-	56	36.842	ENSONIG00000011799	smn1	98	33.444	Oreochromis_niloticus
ENSLACG00000009808	-	92	38.246	ENSOANG00000001626	-	94	36.496	Ornithorhynchus_anatinus
ENSLACG00000009808	-	95	34.783	ENSOCUG00000026649	-	92	34.035	Oryctolagus_cuniculus
ENSLACG00000009808	-	71	38.393	ENSOCUG00000025183	-	75	38.208	Oryctolagus_cuniculus
ENSLACG00000009808	-	95	36.027	ENSOCUG00000017097	-	92	34.629	Oryctolagus_cuniculus
ENSLACG00000009808	-	51	40.000	ENSORLG00000010552	smn1	97	34.641	Oryzias_latipes
ENSLACG00000009808	-	92	35.689	ENSORLG00020007936	smn1	97	35.563	Oryzias_latipes_hni
ENSLACG00000009808	-	92	38.163	ENSORLG00015022425	smn1	97	34.343	Oryzias_latipes_hsok
ENSLACG00000009808	-	92	34.752	ENSOMEG00000007824	smn1	97	35.034	Oryzias_melastigma
ENSLACG00000009808	-	88	32.746	ENSOGAG00000031414	-	93	34.296	Otolemur_garnettii
ENSLACG00000009808	-	89	37.847	ENSOARG00000005425	-	97	36.170	Ovis_aries
ENSLACG00000009808	-	90	37.943	ENSPPAG00000036640	-	93	37.410	Pan_paniscus
ENSLACG00000009808	-	93	38.621	ENSPPRG00000005575	-	93	37.895	Panthera_pardus
ENSLACG00000009808	-	93	38.811	ENSPTIG00000007745	-	93	38.112	Panthera_tigris_altaica
ENSLACG00000009808	-	90	36.131	ENSPTRG00000016955	-	93	36.655	Pan_troglodytes
ENSLACG00000009808	-	95	39.932	ENSPANG00000013601	-	91	37.456	Papio_anubis
ENSLACG00000009808	-	90	37.634	ENSPANG00000000253	-	91	37.050	Papio_anubis
ENSLACG00000009808	-	95	33.788	ENSPKIG00000011096	smn1	99	31.667	Paramormyrops_kingsleyae
ENSLACG00000009808	-	88	40.449	ENSPSIG00000014787	-	87	39.068	Pelodiscus_sinensis
ENSLACG00000009808	-	95	35.430	ENSPMGG00000012285	smn1	99	32.573	Periophthalmus_magnuspinnatus
ENSLACG00000009808	-	93	38.062	ENSPMAG00000005004	smn1	88	37.153	Petromyzon_marinus
ENSLACG00000009808	-	94	36.735	ENSPCIG00000025764	-	93	38.267	Phascolarctos_cinereus
ENSLACG00000009808	-	95	35.354	ENSPFOG00000007786	smn1	97	35.932	Poecilia_formosa
ENSLACG00000009808	-	95	36.054	ENSPLAG00000012071	smn1	97	36.271	Poecilia_latipinna
ENSLACG00000009808	-	95	35.354	ENSPMEG00000017085	smn1	97	35.932	Poecilia_mexicana
ENSLACG00000009808	-	95	36.364	ENSPREG00000005824	smn1	97	36.610	Poecilia_reticulata
ENSLACG00000009808	-	86	39.405	ENSPPYG00000015533	-	92	39.033	Pongo_abelii
ENSLACG00000009808	-	85	39.927	ENSPCAG00000004187	-	96	36.957	Procavia_capensis
ENSLACG00000009808	-	74	36.842	ENSPCOG00000022307	-	59	43.609	Propithecus_coquereli
ENSLACG00000009808	-	90	38.267	ENSPVAG00000005977	-	92	36.620	Pteropus_vampyrus
ENSLACG00000009808	-	95	35.932	ENSPNYG00000014148	smn1	99	34.219	Pundamilia_nyererei
ENSLACG00000009808	-	95	40.000	ENSPNAG00000014007	smn1	86	38.832	Pygocentrus_nattereri
ENSLACG00000009808	-	95	35.959	ENSRNOG00000018067	Smn1	92	36.331	Rattus_norvegicus
ENSLACG00000009808	-	90	39.350	ENSRBIG00000037052	-	91	36.972	Rhinopithecus_bieti
ENSLACG00000009808	-	93	36.491	ENSRBIG00000036775	-	89	35.185	Rhinopithecus_bieti
ENSLACG00000009808	-	90	39.350	ENSRROG00000039399	-	93	37.050	Rhinopithecus_roxellana
ENSLACG00000009808	-	95	36.770	ENSRROG00000031088	-	91	36.232	Rhinopithecus_roxellana
ENSLACG00000009808	-	90	35.766	ENSSBOG00000011665	-	91	39.209	Saimiri_boliviensis_boliviensis
ENSLACG00000009808	-	95	36.120	ENSSHAG00000001499	-	94	38.951	Sarcophilus_harrisii
ENSLACG00000009808	-	96	39.527	ENSSFOG00015015507	smn1	99	38.144	Scleropages_formosus
ENSLACG00000009808	-	95	34.483	ENSSMAG00000007922	smn1	99	33.555	Scophthalmus_maximus
ENSLACG00000009808	-	95	33.784	ENSSDUG00000018533	smn1	99	32.895	Seriola_dumerili
ENSLACG00000009808	-	95	34.122	ENSSLDG00000021135	smn1	99	33.224	Seriola_lalandi_dorsalis
ENSLACG00000009808	-	91	37.456	ENSSPUG00000000373	-	95	37.011	Sphenodon_punctatus
ENSLACG00000009808	-	95	34.483	ENSSPAG00000004345	smn1	99	34.000	Stegastes_partitus
ENSLACG00000009808	-	92	38.194	ENSTGUG00000001548	-	95	37.269	Taeniopygia_guttata
ENSLACG00000009808	-	93	33.922	ENSTRUG00000000736	smn	98	36.027	Takifugu_rubripes
ENSLACG00000009808	-	53	39.264	ENSTBEG00000002399	-	77	39.264	Tupaia_belangeri
ENSLACG00000009808	-	54	40.244	ENSTTRG00000005080	-	90	38.849	Tursiops_truncatus
ENSLACG00000009808	-	54	39.024	ENSUAMG00000024947	-	52	41.781	Ursus_americanus
ENSLACG00000009808	-	90	38.628	ENSUMAG00000007842	-	69	36.620	Ursus_maritimus
ENSLACG00000009808	-	51	39.355	ENSVPAG00000009887	-	94	33.333	Vicugna_pacos
ENSLACG00000009808	-	90	38.434	ENSVVUG00000006934	-	93	36.268	Vulpes_vulpes
ENSLACG00000009808	-	84	34.686	ENSXETG00000004912	-	81	53.968	Xenopus_tropicalis
ENSLACG00000009808	-	91	36.299	ENSXETG00000018189	smn2	92	36.491	Xenopus_tropicalis
ENSLACG00000009808	-	94	36.082	ENSXMAG00000001521	smn1	95	36.301	Xiphophorus_maculatus