EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000009885 (Gene tree)
Gene ID: 102350078
Gene Symbol: prpf18
Alias: zgc:91830
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 34303 bases
Position: chrJH126682.1:456171-490473
Accession: 102350078
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000011236	PRP4	PF08799.11	4.8e-12	1	1
ENSLACP00000011235	PRP4	PF08799.11	5e-12	1	1
ENSLACP00000011236	Prp18	PF02840.15	3.6e-62	1	1
ENSLACP00000011235	Prp18	PF02840.15	4.2e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000011319	-	4381	XM_005992273	ENSLACP00000011235	351 (aa)	XP_005992335	H3ANL4
ENSLACT00000011320	-	2317	XM_005992274	ENSLACP00000011236	342 (aa)	XP_005992336	H3ANL5

Gene Model

Click here to download ENSLACG00000009885's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000009885's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000009885	prpf18	100	86.842	ENSG00000165630	PRPF18	100	86.842	Homo_sapiens
ENSLACG00000009885	prpf18	100	85.088	ENSAPOG00000024177	prpf18	100	84.795	Acanthochromis_polyacanthus
ENSLACG00000009885	prpf18	100	86.257	ENSAMEG00000013591	-	100	86.257	Ailuropoda_melanoleuca
ENSLACG00000009885	prpf18	100	84.795	ENSACIG00000001186	prpf18	100	83.918	Amphilophus_citrinellus
ENSLACG00000009885	prpf18	98	84.478	ENSAOCG00000006572	prpf18	94	82.507	Amphiprion_ocellaris
ENSLACG00000009885	prpf18	100	84.795	ENSAPEG00000004564	prpf18	100	84.503	Amphiprion_percula
ENSLACG00000009885	prpf18	100	84.211	ENSATEG00000000303	prpf18	100	83.333	Anabas_testudineus
ENSLACG00000009885	prpf18	99	86.176	ENSAPLG00000003387	-	99	86.176	Anas_platyrhynchos
ENSLACG00000009885	prpf18	100	86.337	ENSACAG00000000818	-	100	86.337	Anolis_carolinensis
ENSLACG00000009885	prpf18	100	86.257	ENSANAG00000037445	-	100	86.257	Aotus_nancymaae
ENSLACG00000009885	prpf18	100	85.088	ENSACLG00000026296	prpf18	100	84.211	Astatotilapia_calliptera
ENSLACG00000009885	prpf18	100	84.900	ENSAMXG00000012848	prpf18	100	84.286	Astyanax_mexicanus
ENSLACG00000009885	prpf18	100	85.965	ENSBTAG00000017244	PRPF18	100	85.965	Bos_taurus
ENSLACG00000009885	prpf18	98	40.346	WBGene00009320	F32B6.3	97	40.346	Caenorhabditis_elegans
ENSLACG00000009885	prpf18	100	86.257	ENSCJAG00000009432	-	100	86.257	Callithrix_jacchus
ENSLACG00000009885	prpf18	100	86.257	ENSCAFG00000004735	-	100	86.257	Canis_familiaris
ENSLACG00000009885	prpf18	100	86.257	ENSCAFG00020007712	-	100	86.257	Canis_lupus_dingo
ENSLACG00000009885	prpf18	100	85.965	ENSCHIG00000000499	-	100	85.965	Capra_hircus
ENSLACG00000009885	prpf18	100	86.550	ENSTSYG00000003517	-	100	86.550	Carlito_syrichta
ENSLACG00000009885	prpf18	100	86.842	ENSCPOG00000021069	-	100	86.842	Cavia_porcellus
ENSLACG00000009885	prpf18	100	86.257	ENSCCAG00000036822	-	100	86.257	Cebus_capucinus
ENSLACG00000009885	prpf18	100	76.608	ENSCATG00000016633	-	100	76.608	Cercocebus_atys
ENSLACG00000009885	prpf18	100	86.257	ENSCLAG00000011770	-	100	86.257	Chinchilla_lanigera
ENSLACG00000009885	prpf18	100	85.470	ENSCSAG00000013109	-	100	85.470	Chlorocebus_sabaeus
ENSLACG00000009885	prpf18	100	84.551	ENSCPBG00000003100	-	100	85.112	Chrysemys_picta_bellii
ENSLACG00000009885	prpf18	99	56.305	ENSCING00000020481	-	97	55.294	Ciona_intestinalis
ENSLACG00000009885	prpf18	99	56.012	ENSCSAVG00000010546	-	99	55.718	Ciona_savignyi
ENSLACG00000009885	prpf18	100	86.550	ENSCANG00000034900	-	100	86.550	Colobus_angolensis_palliatus
ENSLACG00000009885	prpf18	100	86.550	ENSCGRG00001023665	Prpf18	100	86.550	Cricetulus_griseus_chok1gshd
ENSLACG00000009885	prpf18	100	86.550	ENSCGRG00000014690	Prpf18	100	86.550	Cricetulus_griseus_crigri
ENSLACG00000009885	prpf18	100	82.456	ENSCSEG00000005536	prpf18	99	82.164	Cynoglossus_semilaevis
ENSLACG00000009885	prpf18	100	83.918	ENSCVAG00000012401	prpf18	100	83.626	Cyprinodon_variegatus
ENSLACG00000009885	prpf18	100	85.673	ENSDARG00000058306	prpf18	100	85.673	Danio_rerio
ENSLACG00000009885	prpf18	100	86.550	ENSDNOG00000035607	-	100	86.550	Dasypus_novemcinctus
ENSLACG00000009885	prpf18	100	86.257	ENSDORG00000000858	Prpf18	100	86.257	Dipodomys_ordii
ENSLACG00000009885	prpf18	99	51.917	FBgn0027784	Prp18	98	51.622	Drosophila_melanogaster
ENSLACG00000009885	prpf18	100	77.193	ENSETEG00000015060	-	100	77.193	Echinops_telfairi
ENSLACG00000009885	prpf18	100	68.012	ENSEBUG00000016502	prpf18	99	66.763	Eptatretus_burgeri
ENSLACG00000009885	prpf18	100	86.550	ENSEASG00005019373	-	100	86.550	Equus_asinus_asinus
ENSLACG00000009885	prpf18	100	86.550	ENSECAG00000006997	PRPF18	100	86.550	Equus_caballus
ENSLACG00000009885	prpf18	92	53.797	ENSEEUG00000001171	-	100	53.797	Erinaceus_europaeus
ENSLACG00000009885	prpf18	100	82.799	ENSELUG00000022190	prpf18	100	82.799	Esox_lucius
ENSLACG00000009885	prpf18	100	86.257	ENSFCAG00000004436	-	100	86.257	Felis_catus
ENSLACG00000009885	prpf18	93	85.231	ENSFALG00000001912	-	97	85.231	Ficedula_albicollis
ENSLACG00000009885	prpf18	94	89.375	ENSFDAG00000014026	-	100	89.375	Fukomys_damarensis
ENSLACG00000009885	prpf18	99	57.971	ENSFDAG00000010713	-	97	57.681	Fukomys_damarensis
ENSLACG00000009885	prpf18	80	87.546	ENSFHEG00000020125	prpf18	98	87.266	Fundulus_heteroclitus
ENSLACG00000009885	prpf18	99	79.765	ENSGMOG00000012210	prpf18	99	78.886	Gadus_morhua
ENSLACG00000009885	prpf18	100	87.135	ENSGALG00000043593	-	100	87.135	Gallus_gallus
ENSLACG00000009885	prpf18	100	83.333	ENSGAFG00000006034	prpf18	100	82.749	Gambusia_affinis
ENSLACG00000009885	prpf18	100	80.994	ENSGACG00000012232	prpf18	100	80.409	Gasterosteus_aculeatus
ENSLACG00000009885	prpf18	100	88.596	ENSGAGG00000016878	-	100	88.596	Gopherus_agassizii
ENSLACG00000009885	prpf18	92	85.759	ENSGGOG00000025188	-	96	85.759	Gorilla_gorilla
ENSLACG00000009885	prpf18	100	85.088	ENSHBUG00000010264	prpf18	100	84.211	Haplochromis_burtoni
ENSLACG00000009885	prpf18	100	86.257	ENSHGLG00000018534	PRPF18	100	86.257	Heterocephalus_glaber_female
ENSLACG00000009885	prpf18	94	88.509	ENSHGLG00100012161	-	98	88.509	Heterocephalus_glaber_male
ENSLACG00000009885	prpf18	100	84.211	ENSHCOG00000015987	prpf18	100	83.626	Hippocampus_comes
ENSLACG00000009885	prpf18	100	83.003	ENSIPUG00000007432	prpf18	100	82.720	Ictalurus_punctatus
ENSLACG00000009885	prpf18	100	86.257	ENSSTOG00000008735	-	100	86.257	Ictidomys_tridecemlineatus
ENSLACG00000009885	prpf18	100	62.682	ENSJJAG00000015191	-	100	62.682	Jaculus_jaculus
ENSLACG00000009885	prpf18	100	86.842	ENSJJAG00000024041	-	100	86.842	Jaculus_jaculus
ENSLACG00000009885	prpf18	100	83.626	ENSKMAG00000012124	prpf18	100	82.749	Kryptolebias_marmoratus
ENSLACG00000009885	prpf18	100	79.240	ENSLBEG00000028466	prpf18	99	80.655	Labrus_bergylta
ENSLACG00000009885	prpf18	100	90.643	ENSLOCG00000016736	prpf18	100	90.643	Lepisosteus_oculatus
ENSLACG00000009885	prpf18	100	86.842	ENSLAFG00000007753	-	100	86.842	Loxodonta_africana
ENSLACG00000009885	prpf18	100	86.842	ENSMFAG00000000540	-	100	86.842	Macaca_fascicularis
ENSLACG00000009885	prpf18	100	86.842	ENSMMUG00000015071	PRPF18	100	86.842	Macaca_mulatta
ENSLACG00000009885	prpf18	100	86.842	ENSMNEG00000024679	-	100	86.842	Macaca_nemestrina
ENSLACG00000009885	prpf18	100	71.637	ENSMLEG00000031715	-	100	71.637	Mandrillus_leucophaeus
ENSLACG00000009885	prpf18	100	84.795	ENSMAMG00000006610	prpf18	100	83.918	Mastacembelus_armatus
ENSLACG00000009885	prpf18	100	85.088	ENSMZEG00005019392	prpf18	100	84.211	Maylandia_zebra
ENSLACG00000009885	prpf18	100	87.135	ENSMGAG00000005023	-	100	87.135	Meleagris_gallopavo
ENSLACG00000009885	prpf18	100	86.550	ENSMICG00000006572	-	100	86.550	Microcebus_murinus
ENSLACG00000009885	prpf18	100	86.842	ENSMOCG00000021468	Prpf18	100	86.842	Microtus_ochrogaster
ENSLACG00000009885	prpf18	100	83.918	ENSMMOG00000013012	prpf18	100	83.333	Mola_mola
ENSLACG00000009885	prpf18	96	82.840	ENSMODG00000016902	-	92	82.840	Monodelphis_domestica
ENSLACG00000009885	prpf18	100	78.070	ENSMODG00000024043	-	100	78.070	Monodelphis_domestica
ENSLACG00000009885	prpf18	100	77.457	ENSMALG00000005486	prpf18	100	77.971	Monopterus_albus
ENSLACG00000009885	prpf18	100	86.550	MGP_CAROLIEiJ_G0023143	Prpf18	100	93.151	Mus_caroli
ENSLACG00000009885	prpf18	100	86.257	ENSMUSG00000039449	Prpf18	100	93.151	Mus_musculus
ENSLACG00000009885	prpf18	100	86.842	MGP_PahariEiJ_G0019203	Prpf18	100	93.151	Mus_pahari
ENSLACG00000009885	prpf18	100	86.257	MGP_SPRETEiJ_G0024061	Prpf18	100	93.151	Mus_spretus
ENSLACG00000009885	prpf18	100	85.965	ENSMPUG00000000938	-	100	85.965	Mustela_putorius_furo
ENSLACG00000009885	prpf18	100	86.257	ENSMLUG00000009200	-	100	86.257	Myotis_lucifugus
ENSLACG00000009885	prpf18	100	86.842	ENSNGAG00000012500	-	100	86.842	Nannospalax_galili
ENSLACG00000009885	prpf18	67	84.783	ENSNGAG00000023550	-	83	84.052	Nannospalax_galili
ENSLACG00000009885	prpf18	100	85.088	ENSNBRG00000001778	prpf18	100	84.211	Neolamprologus_brichardi
ENSLACG00000009885	prpf18	100	86.842	ENSNLEG00000012186	-	100	86.842	Nomascus_leucogenys
ENSLACG00000009885	prpf18	100	60.819	ENSMEUG00000005032	-	100	60.819	Notamacropus_eugenii
ENSLACG00000009885	prpf18	77	66.792	ENSOPRG00000002153	-	100	66.792	Ochotona_princeps
ENSLACG00000009885	prpf18	100	86.257	ENSODEG00000003770	-	100	86.257	Octodon_degus
ENSLACG00000009885	prpf18	98	84.478	ENSONIG00000014854	prpf18	96	83.582	Oreochromis_niloticus
ENSLACG00000009885	prpf18	100	87.719	ENSOANG00000015404	-	100	87.719	Ornithorhynchus_anatinus
ENSLACG00000009885	prpf18	100	86.550	ENSOCUG00000027756	-	94	89.375	Oryctolagus_cuniculus
ENSLACG00000009885	prpf18	100	82.051	ENSORLG00000010293	prpf18	100	81.481	Oryzias_latipes
ENSLACG00000009885	prpf18	100	83.626	ENSORLG00020001530	prpf18	100	83.041	Oryzias_latipes_hni
ENSLACG00000009885	prpf18	100	83.333	ENSORLG00015013705	prpf18	100	82.749	Oryzias_latipes_hsok
ENSLACG00000009885	prpf18	100	85.380	ENSOMEG00000009167	prpf18	100	84.795	Oryzias_melastigma
ENSLACG00000009885	prpf18	100	85.965	ENSOGAG00000007294	-	100	85.965	Otolemur_garnettii
ENSLACG00000009885	prpf18	100	84.615	ENSOARG00000006243	-	100	84.615	Ovis_aries
ENSLACG00000009885	prpf18	100	86.842	ENSPPAG00000041959	-	100	86.842	Pan_paniscus
ENSLACG00000009885	prpf18	100	86.257	ENSPPRG00000000107	-	100	86.257	Panthera_pardus
ENSLACG00000009885	prpf18	100	86.550	ENSPTIG00000021094	-	100	86.550	Panthera_tigris_altaica
ENSLACG00000009885	prpf18	100	86.842	ENSPTRG00000002306	PRPF18	100	86.842	Pan_troglodytes
ENSLACG00000009885	prpf18	100	86.550	ENSPANG00000023346	-	100	86.550	Papio_anubis
ENSLACG00000009885	prpf18	100	83.761	ENSPKIG00000014128	prpf18	96	83.761	Paramormyrops_kingsleyae
ENSLACG00000009885	prpf18	100	87.427	ENSPSIG00000016064	-	100	87.427	Pelodiscus_sinensis
ENSLACG00000009885	prpf18	100	79.825	ENSPMGG00000016486	prpf18	100	79.825	Periophthalmus_magnuspinnatus
ENSLACG00000009885	prpf18	100	86.550	ENSPEMG00000013704	Prpf18	100	86.550	Peromyscus_maniculatus_bairdii
ENSLACG00000009885	prpf18	100	71.304	ENSPMAG00000000204	prpf18	100	71.014	Petromyzon_marinus
ENSLACG00000009885	prpf18	92	86.392	ENSPCIG00000012963	-	99	86.392	Phascolarctos_cinereus
ENSLACG00000009885	prpf18	100	82.051	ENSPFOG00000017611	prpf18	100	82.102	Poecilia_formosa
ENSLACG00000009885	prpf18	100	83.626	ENSPLAG00000000369	prpf18	100	83.333	Poecilia_latipinna
ENSLACG00000009885	prpf18	100	83.626	ENSPMEG00000005183	prpf18	100	83.333	Poecilia_mexicana
ENSLACG00000009885	prpf18	100	84.211	ENSPREG00000015232	prpf18	100	83.626	Poecilia_reticulata
ENSLACG00000009885	prpf18	100	86.550	ENSPPYG00000002101	PRPF18	100	86.550	Pongo_abelii
ENSLACG00000009885	prpf18	100	69.006	ENSPCAG00000010833	-	100	69.006	Procavia_capensis
ENSLACG00000009885	prpf18	100	80.994	ENSPCOG00000013057	-	100	79.825	Propithecus_coquereli
ENSLACG00000009885	prpf18	100	51.754	ENSPVAG00000002947	-	100	51.754	Pteropus_vampyrus
ENSLACG00000009885	prpf18	100	84.795	ENSPNYG00000003554	prpf18	100	83.918	Pundamilia_nyererei
ENSLACG00000009885	prpf18	100	86.325	ENSPNAG00000023151	prpf18	100	86.325	Pygocentrus_nattereri
ENSLACG00000009885	prpf18	100	85.965	ENSRNOG00000018396	Prpf18	100	85.965	Rattus_norvegicus
ENSLACG00000009885	prpf18	100	86.257	ENSRBIG00000028028	-	100	86.257	Rhinopithecus_bieti
ENSLACG00000009885	prpf18	100	86.550	ENSRROG00000040695	-	100	86.550	Rhinopithecus_roxellana
ENSLACG00000009885	prpf18	100	86.257	ENSSBOG00000034482	-	100	86.257	Saimiri_boliviensis_boliviensis
ENSLACG00000009885	prpf18	100	71.345	ENSSHAG00000009669	-	100	71.345	Sarcophilus_harrisii
ENSLACG00000009885	prpf18	100	87.135	ENSSHAG00000016463	-	100	87.135	Sarcophilus_harrisii
ENSLACG00000009885	prpf18	77	44.906	ENSSFOG00015021154	-	89	49.785	Scleropages_formosus
ENSLACG00000009885	prpf18	98	85.507	ENSSFOG00015022118	prpf18	100	79.827	Scleropages_formosus
ENSLACG00000009885	prpf18	100	82.456	ENSSMAG00000005308	prpf18	100	81.579	Scophthalmus_maximus
ENSLACG00000009885	prpf18	100	84.795	ENSSDUG00000015428	prpf18	100	83.918	Seriola_dumerili
ENSLACG00000009885	prpf18	100	84.795	ENSSLDG00000023989	prpf18	100	83.918	Seriola_lalandi_dorsalis
ENSLACG00000009885	prpf18	100	58.480	ENSSARG00000005307	-	100	58.480	Sorex_araneus
ENSLACG00000009885	prpf18	100	88.304	ENSSPUG00000002619	-	100	88.304	Sphenodon_punctatus
ENSLACG00000009885	prpf18	100	84.503	ENSSPAG00000019502	prpf18	100	84.211	Stegastes_partitus
ENSLACG00000009885	prpf18	100	86.257	ENSSSCG00000026354	-	100	86.257	Sus_scrofa
ENSLACG00000009885	prpf18	100	87.719	ENSTGUG00000002286	-	100	87.719	Taeniopygia_guttata
ENSLACG00000009885	prpf18	100	84.211	ENSTRUG00000011278	prpf18	100	83.333	Takifugu_rubripes
ENSLACG00000009885	prpf18	100	84.795	ENSTNIG00000000911	prpf18	100	83.918	Tetraodon_nigroviridis
ENSLACG00000009885	prpf18	80	100.000	ENSTBEG00000013011	-	79	100.000	Tupaia_belangeri
ENSLACG00000009885	prpf18	100	87.135	ENSTTRG00000011117	PRPF18	100	87.135	Tursiops_truncatus
ENSLACG00000009885	prpf18	91	89.068	ENSUAMG00000001815	-	93	89.068	Ursus_americanus
ENSLACG00000009885	prpf18	100	81.579	ENSUMAG00000012329	-	100	81.579	Ursus_maritimus
ENSLACG00000009885	prpf18	100	80.702	ENSVPAG00000011486	-	100	80.702	Vicugna_pacos
ENSLACG00000009885	prpf18	100	86.257	ENSVVUG00000005453	-	100	86.257	Vulpes_vulpes
ENSLACG00000009885	prpf18	100	80.347	ENSXETG00000024057	prpf18	100	80.000	Xenopus_tropicalis
ENSLACG00000009885	prpf18	100	82.558	ENSXCOG00000020414	prpf18	100	82.558	Xiphophorus_couchianus
ENSLACG00000009885	prpf18	100	83.333	ENSXMAG00000004713	prpf18	91	83.041	Xiphophorus_maculatus