EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000009899 (Gene tree)
Gene ID: -
Gene Symbol: zgc:165603
Alias: -
Full Name: zgc:165603
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 6791 bases
Position: chrJH128258.1:457217-464007
Accession: ZDB-GENE-070620-21
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000011253	RRM_1	PF00076.22	8.2e-16	1	1
ENSLACP00000011252	RRM_1	PF00076.22	1.1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000011336	-	399	-	ENSLACP00000011252	132 (aa)	-	H3ANN1
ENSLACT00000011337	-	378	-	ENSLACP00000011253	126 (aa)	-	H3ANN2

Gene Model

Click here to download ENSLACG00000009899's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000009899's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000009899	zgc:165603	60	69.333	ENSLACG00000016312	-	61	69.333
ENSLACG00000009899	zgc:165603	61	30.000	ENSLACG00000013434	SLIRP	72	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000009899	zgc:165603	85	80.357	ENSAOCG00000012598	zgc:165603	66	80.357	Amphiprion_ocellaris
ENSLACG00000009899	zgc:165603	78	77.551	ENSAMXG00000036838	-	90	71.028	Astyanax_mexicanus
ENSLACG00000009899	zgc:165603	71	81.818	ENSBTAG00000019131	CELF3	52	81.818	Bos_taurus
ENSLACG00000009899	zgc:165603	77	85.859	ENSCVAG00000005395	zgc:165603	64	85.859	Cyprinodon_variegatus
ENSLACG00000009899	zgc:165603	77	84.848	ENSDARG00000098702	zgc:165603	64	84.848	Danio_rerio
ENSLACG00000009899	zgc:165603	60	89.474	ENSHCOG00000014147	-	79	82.353	Hippocampus_comes
ENSLACG00000009899	zgc:165603	51	83.333	ENSMMOG00000000542	zgc:165603	70	83.333	Mola_mola
ENSLACG00000009899	zgc:165603	62	84.615	ENSMUSG00000034818	Celf5	72	40.299	Mus_musculus
ENSLACG00000009899	zgc:165603	62	84.615	MGP_SPRETEiJ_G0016461	Celf5	72	40.299	Mus_spretus
ENSLACG00000009899	zgc:165603	87	79.487	ENSPKIG00000018966	zgc:165603	66	76.923	Paramormyrops_kingsleyae
ENSLACG00000009899	zgc:165603	77	85.859	ENSPLAG00000009650	zgc:165603	54	85.859	Poecilia_latipinna
ENSLACG00000009899	zgc:165603	87	79.130	ENSPMEG00000003804	zgc:165603	81	79.130	Poecilia_mexicana
ENSLACG00000009899	zgc:165603	71	81.818	ENSSBOG00000021984	CELF3	51	81.818	Saimiri_boliviensis_boliviensis
ENSLACG00000009899	zgc:165603	66	39.080	ENSXETG00000012296	celf3	50	43.662	Xenopus_tropicalis