EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000010231 (Gene tree)
Gene ID: 102367425
Gene Symbol: LSM8
Alias: YJR022W
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 13524 bases
Position: chrJH127658.1:484197-497720
Accession: 102367425
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000011624	LSM	PF01423.22	2e-19	1	1
ENSLACP00000011625	LSM	PF01423.22	1.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000011714	LSM8-202	291	-	ENSLACP00000011625	96 (aa)	-	H3APQ4
ENSLACT00000011713	LSM8-201	1764	XM_006004776	ENSLACP00000011624	96 (aa)	XP_006004838	H3APQ3

Gene Model

Click here to download ENSLACG00000010231's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03018	RNA degradation	KEGG
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000010231's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000010231	LSM8	73	36.842	ENSLACG00000015700	LSM7	72	36.842
ENSLACG00000010231	LSM8	80	33.766	ENSLACG00000010947	LSM1	63	33.766

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000010231	LSM8	100	94.792	ENSG00000128534	LSM8	100	96.000	Homo_sapiens
ENSLACG00000010231	LSM8	100	93.750	ENSAPOG00000008649	lsm8	100	93.750	Acanthochromis_polyacanthus
ENSLACG00000010231	LSM8	100	94.792	ENSAMEG00000001162	LSM8	100	94.792	Ailuropoda_melanoleuca
ENSLACG00000010231	LSM8	78	96.000	ENSACIG00000014694	lsm8	100	96.000	Amphilophus_citrinellus
ENSLACG00000010231	LSM8	100	93.750	ENSAOCG00000013926	lsm8	100	93.750	Amphiprion_ocellaris
ENSLACG00000010231	LSM8	100	93.750	ENSAPEG00000023502	lsm8	100	93.750	Amphiprion_percula
ENSLACG00000010231	LSM8	78	96.000	ENSATEG00000023432	lsm8	100	96.000	Anabas_testudineus
ENSLACG00000010231	LSM8	94	93.333	ENSAPLG00000005115	LSM8	100	85.859	Anas_platyrhynchos
ENSLACG00000010231	LSM8	100	94.792	ENSANAG00000027771	LSM8	100	94.792	Aotus_nancymaae
ENSLACG00000010231	LSM8	100	93.750	ENSACLG00000011253	lsm8	100	93.750	Astatotilapia_calliptera
ENSLACG00000010231	LSM8	100	93.750	ENSAMXG00000042902	lsm8	100	93.750	Astyanax_mexicanus
ENSLACG00000010231	LSM8	100	94.792	ENSBTAG00000012649	LSM8	100	94.792	Bos_taurus
ENSLACG00000010231	LSM8	98	58.511	WBGene00003082	lsm-8	96	58.511	Caenorhabditis_elegans
ENSLACG00000010231	LSM8	100	94.792	ENSCJAG00000046406	LSM8	100	94.792	Callithrix_jacchus
ENSLACG00000010231	LSM8	98	95.745	ENSCAFG00000016459	LSM8	95	95.745	Canis_familiaris
ENSLACG00000010231	LSM8	100	94.792	ENSCAFG00020007643	-	100	94.792	Canis_lupus_dingo
ENSLACG00000010231	LSM8	89	94.118	ENSCAFG00020012800	-	66	94.118	Canis_lupus_dingo
ENSLACG00000010231	LSM8	92	93.182	ENSCHIG00000014201	LSM8	94	93.182	Capra_hircus
ENSLACG00000010231	LSM8	100	94.792	ENSTSYG00000032434	LSM8	100	94.792	Carlito_syrichta
ENSLACG00000010231	LSM8	77	94.595	ENSCAPG00000008253	LSM8	100	94.595	Cavia_aperea
ENSLACG00000010231	LSM8	100	94.792	ENSCPOG00000035673	LSM8	100	94.792	Cavia_porcellus
ENSLACG00000010231	LSM8	100	94.792	ENSCCAG00000021329	LSM8	100	94.792	Cebus_capucinus
ENSLACG00000010231	LSM8	100	94.792	ENSCATG00000045302	LSM8	100	94.792	Cercocebus_atys
ENSLACG00000010231	LSM8	100	94.792	ENSCLAG00000003726	LSM8	100	94.792	Chinchilla_lanigera
ENSLACG00000010231	LSM8	100	90.625	ENSCSAG00000019007	-	100	90.625	Chlorocebus_sabaeus
ENSLACG00000010231	LSM8	100	94.792	ENSCSAG00000010802	-	100	94.792	Chlorocebus_sabaeus
ENSLACG00000010231	LSM8	93	92.135	ENSCPBG00000008154	LSM8	91	92.135	Chrysemys_picta_bellii
ENSLACG00000010231	LSM8	100	73.958	ENSCING00000024877	-	100	73.958	Ciona_intestinalis
ENSLACG00000010231	LSM8	100	94.792	ENSCANG00000040728	LSM8	100	94.792	Colobus_angolensis_palliatus
ENSLACG00000010231	LSM8	100	94.792	ENSCGRG00001000450	Lsm8	100	94.792	Cricetulus_griseus_chok1gshd
ENSLACG00000010231	LSM8	89	95.294	ENSCGRG00000005587	Lsm8	100	95.294	Cricetulus_griseus_crigri
ENSLACG00000010231	LSM8	100	80.208	ENSCSEG00000004164	lsm8	100	80.208	Cynoglossus_semilaevis
ENSLACG00000010231	LSM8	100	94.792	ENSCVAG00000020547	lsm8	100	94.792	Cyprinodon_variegatus
ENSLACG00000010231	LSM8	100	92.708	ENSDARG00000091656	lsm8	100	92.708	Danio_rerio
ENSLACG00000010231	LSM8	100	94.792	ENSDNOG00000034613	LSM8	100	94.792	Dasypus_novemcinctus
ENSLACG00000010231	LSM8	100	94.792	ENSDORG00000027868	Lsm8	100	94.792	Dipodomys_ordii
ENSLACG00000010231	LSM8	98	69.149	FBgn0035271	CG2021	99	69.149	Drosophila_melanogaster
ENSLACG00000010231	LSM8	100	95.833	ENSETEG00000011594	LSM8	100	95.833	Echinops_telfairi
ENSLACG00000010231	LSM8	77	90.541	ENSEBUG00000012017	lsm8	100	90.541	Eptatretus_burgeri
ENSLACG00000010231	LSM8	100	94.792	ENSEASG00005008932	LSM8	62	94.792	Equus_asinus_asinus
ENSLACG00000010231	LSM8	92	93.182	ENSECAG00000024025	LSM8	80	93.182	Equus_caballus
ENSLACG00000010231	LSM8	100	92.708	ENSELUG00000010138	lsm8	100	92.708	Esox_lucius
ENSLACG00000010231	LSM8	100	94.792	ENSFCAG00000036620	-	100	94.792	Felis_catus
ENSLACG00000010231	LSM8	85	71.951	ENSFCAG00000044794	-	83	71.951	Felis_catus
ENSLACG00000010231	LSM8	100	95.833	ENSFALG00000010023	LSM8	100	95.833	Ficedula_albicollis
ENSLACG00000010231	LSM8	100	94.792	ENSFDAG00000019530	LSM8	100	94.792	Fukomys_damarensis
ENSLACG00000010231	LSM8	100	93.750	ENSFHEG00000013729	lsm8	100	93.750	Fundulus_heteroclitus
ENSLACG00000010231	LSM8	100	95.833	ENSGALG00000009110	LSM8	100	95.833	Gallus_gallus
ENSLACG00000010231	LSM8	100	94.792	ENSGAFG00000001135	lsm8	100	94.792	Gambusia_affinis
ENSLACG00000010231	LSM8	100	94.792	ENSGAGG00000017366	LSM8	100	94.792	Gopherus_agassizii
ENSLACG00000010231	LSM8	100	94.792	ENSGGOG00000041883	LSM8	100	94.792	Gorilla_gorilla
ENSLACG00000010231	LSM8	100	93.750	ENSHBUG00000003646	lsm8	100	93.750	Haplochromis_burtoni
ENSLACG00000010231	LSM8	71	95.588	ENSHGLG00000001988	-	99	95.588	Heterocephalus_glaber_female
ENSLACG00000010231	LSM8	100	88.542	ENSHGLG00000019782	-	100	88.542	Heterocephalus_glaber_female
ENSLACG00000010231	LSM8	100	90.625	ENSHGLG00100012166	-	100	90.625	Heterocephalus_glaber_male
ENSLACG00000010231	LSM8	98	93.617	ENSHGLG00100003934	-	94	93.617	Heterocephalus_glaber_male
ENSLACG00000010231	LSM8	100	93.750	ENSHCOG00000005037	lsm8	100	93.750	Hippocampus_comes
ENSLACG00000010231	LSM8	100	93.750	ENSIPUG00000019811	NAA38	100	93.750	Ictalurus_punctatus
ENSLACG00000010231	LSM8	92	82.955	ENSSTOG00000034801	-	81	82.955	Ictidomys_tridecemlineatus
ENSLACG00000010231	LSM8	100	94.792	ENSSTOG00000009039	LSM8	100	94.792	Ictidomys_tridecemlineatus
ENSLACG00000010231	LSM8	100	94.792	ENSJJAG00000009031	Lsm8	99	94.792	Jaculus_jaculus
ENSLACG00000010231	LSM8	100	93.750	ENSKMAG00000018983	lsm8	100	93.750	Kryptolebias_marmoratus
ENSLACG00000010231	LSM8	100	94.792	ENSLOCG00000015580	lsm8	100	94.792	Lepisosteus_oculatus
ENSLACG00000010231	LSM8	100	93.814	ENSLAFG00000011242	LSM8	100	93.814	Loxodonta_africana
ENSLACG00000010231	LSM8	100	94.792	ENSMFAG00000035798	LSM8	100	94.792	Macaca_fascicularis
ENSLACG00000010231	LSM8	100	90.625	ENSMFAG00000013044	-	100	90.625	Macaca_fascicularis
ENSLACG00000010231	LSM8	100	94.792	ENSMMUG00000046401	LSM8	100	93.243	Macaca_mulatta
ENSLACG00000010231	LSM8	78	92.000	ENSMNEG00000011141	-	100	92.000	Macaca_nemestrina
ENSLACG00000010231	LSM8	100	94.792	ENSMNEG00000036764	-	100	94.792	Macaca_nemestrina
ENSLACG00000010231	LSM8	100	94.792	ENSMLEG00000035828	-	100	94.792	Mandrillus_leucophaeus
ENSLACG00000010231	LSM8	100	80.208	ENSMLEG00000039324	-	100	80.208	Mandrillus_leucophaeus
ENSLACG00000010231	LSM8	78	96.000	ENSMAMG00000018839	lsm8	100	96.000	Mastacembelus_armatus
ENSLACG00000010231	LSM8	100	93.750	ENSMZEG00005019138	lsm8	100	93.750	Maylandia_zebra
ENSLACG00000010231	LSM8	100	95.833	ENSMGAG00000008808	LSM8	100	95.833	Meleagris_gallopavo
ENSLACG00000010231	LSM8	75	88.889	ENSMAUG00000020287	-	100	86.486	Mesocricetus_auratus
ENSLACG00000010231	LSM8	100	77.083	ENSMAUG00000015356	-	100	77.083	Mesocricetus_auratus
ENSLACG00000010231	LSM8	100	88.542	ENSMAUG00000015721	-	100	88.542	Mesocricetus_auratus
ENSLACG00000010231	LSM8	100	94.792	ENSMICG00000042730	LSM8	100	94.792	Microcebus_murinus
ENSLACG00000010231	LSM8	100	94.792	ENSMOCG00000001688	Lsm8	100	94.792	Microtus_ochrogaster
ENSLACG00000010231	LSM8	78	96.000	ENSMMOG00000006046	lsm8	100	96.000	Mola_mola
ENSLACG00000010231	LSM8	66	98.413	ENSMODG00000015729	LSM8	81	98.413	Monodelphis_domestica
ENSLACG00000010231	LSM8	100	92.708	ENSMALG00000000405	lsm8	100	92.708	Monopterus_albus
ENSLACG00000010231	LSM8	100	94.792	MGP_CAROLIEiJ_G0028125	-	100	94.792	Mus_caroli
ENSLACG00000010231	LSM8	100	94.792	ENSMUSG00000044155	Lsm8	100	94.792	Mus_musculus
ENSLACG00000010231	LSM8	100	94.792	MGP_PahariEiJ_G0021881	Lsm8	100	96.000	Mus_pahari
ENSLACG00000010231	LSM8	100	94.792	MGP_SPRETEiJ_G0029125	-	100	94.792	Mus_spretus
ENSLACG00000010231	LSM8	100	93.750	ENSMLUG00000027762	-	100	93.750	Myotis_lucifugus
ENSLACG00000010231	LSM8	100	94.792	ENSMLUG00000006837	-	100	94.792	Myotis_lucifugus
ENSLACG00000010231	LSM8	100	94.792	ENSNGAG00000016554	Lsm8	100	94.792	Nannospalax_galili
ENSLACG00000010231	LSM8	100	93.750	ENSNBRG00000014441	lsm8	100	93.750	Neolamprologus_brichardi
ENSLACG00000010231	LSM8	100	94.792	ENSNLEG00000011768	LSM8	100	94.792	Nomascus_leucogenys
ENSLACG00000010231	LSM8	100	83.333	ENSMEUG00000007801	LSM8	100	83.333	Notamacropus_eugenii
ENSLACG00000010231	LSM8	89	95.294	ENSOPRG00000014809	LSM8	100	95.294	Ochotona_princeps
ENSLACG00000010231	LSM8	100	94.792	ENSODEG00000000418	-	100	94.792	Octodon_degus
ENSLACG00000010231	LSM8	90	77.907	ENSODEG00000020290	-	100	77.907	Octodon_degus
ENSLACG00000010231	LSM8	100	93.750	ENSOANG00000014536	LSM8	100	93.750	Ornithorhynchus_anatinus
ENSLACG00000010231	LSM8	100	93.814	ENSOCUG00000017359	LSM8	100	93.814	Oryctolagus_cuniculus
ENSLACG00000010231	LSM8	100	82.292	ENSORLG00000017432	lsm8	100	82.292	Oryzias_latipes
ENSLACG00000010231	LSM8	100	82.292	ENSORLG00020004376	lsm8	100	82.292	Oryzias_latipes_hni
ENSLACG00000010231	LSM8	100	93.750	ENSORLG00015003757	lsm8	100	93.750	Oryzias_latipes_hsok
ENSLACG00000010231	LSM8	100	80.208	ENSOMEG00000022509	lsm8	100	81.250	Oryzias_melastigma
ENSLACG00000010231	LSM8	100	94.792	ENSOGAG00000013377	LSM8	100	94.792	Otolemur_garnettii
ENSLACG00000010231	LSM8	100	94.792	ENSOARG00000017974	LSM8	100	94.792	Ovis_aries
ENSLACG00000010231	LSM8	78	96.000	ENSPPAG00000043228	-	100	96.000	Pan_paniscus
ENSLACG00000010231	LSM8	100	94.792	ENSPPRG00000006444	LSM8	100	94.792	Panthera_pardus
ENSLACG00000010231	LSM8	100	94.792	ENSPTIG00000004722	LSM8	100	94.792	Panthera_tigris_altaica
ENSLACG00000010231	LSM8	78	96.000	ENSPTRG00000046596	-	100	96.000	Pan_troglodytes
ENSLACG00000010231	LSM8	100	88.542	ENSPANG00000019395	-	100	88.542	Papio_anubis
ENSLACG00000010231	LSM8	100	94.792	ENSPANG00000035470	-	100	94.792	Papio_anubis
ENSLACG00000010231	LSM8	100	86.869	ENSPKIG00000006092	lsm8	100	86.869	Paramormyrops_kingsleyae
ENSLACG00000010231	LSM8	78	96.000	ENSPSIG00000017054	LSM8	100	96.000	Pelodiscus_sinensis
ENSLACG00000010231	LSM8	78	96.000	ENSPMGG00000016442	lsm8	100	96.000	Periophthalmus_magnuspinnatus
ENSLACG00000010231	LSM8	77	93.243	ENSPEMG00000009153	Lsm8	100	93.243	Peromyscus_maniculatus_bairdii
ENSLACG00000010231	LSM8	97	95.699	ENSPCIG00000021467	LSM8	98	95.699	Phascolarctos_cinereus
ENSLACG00000010231	LSM8	100	94.792	ENSPFOG00000012340	lsm8	100	94.792	Poecilia_formosa
ENSLACG00000010231	LSM8	89	96.471	ENSPLAG00000000516	lsm8	89	96.471	Poecilia_latipinna
ENSLACG00000010231	LSM8	100	94.792	ENSPMEG00000022567	lsm8	100	94.792	Poecilia_mexicana
ENSLACG00000010231	LSM8	76	86.250	ENSPREG00000005527	lsm8	72	86.250	Poecilia_reticulata
ENSLACG00000010231	LSM8	100	94.792	ENSPPYG00000017942	LSM8	100	94.792	Pongo_abelii
ENSLACG00000010231	LSM8	100	94.792	ENSPCOG00000003309	-	100	94.792	Propithecus_coquereli
ENSLACG00000010231	LSM8	97	75.269	ENSPCOG00000017982	-	97	75.269	Propithecus_coquereli
ENSLACG00000010231	LSM8	89	94.118	ENSPVAG00000000990	LSM8	100	94.118	Pteropus_vampyrus
ENSLACG00000010231	LSM8	100	93.750	ENSPNYG00000011448	lsm8	100	93.750	Pundamilia_nyererei
ENSLACG00000010231	LSM8	100	93.750	ENSPNAG00000010252	lsm8	100	93.750	Pygocentrus_nattereri
ENSLACG00000010231	LSM8	100	94.792	ENSRNOG00000058677	Lsm8	100	94.792	Rattus_norvegicus
ENSLACG00000010231	LSM8	100	94.792	ENSRBIG00000032851	LSM8	100	94.792	Rhinopithecus_bieti
ENSLACG00000010231	LSM8	100	94.792	ENSRROG00000039618	LSM8	100	94.792	Rhinopithecus_roxellana
ENSLACG00000010231	LSM8	100	94.792	ENSSBOG00000023223	LSM8	100	94.792	Saimiri_boliviensis_boliviensis
ENSLACG00000010231	LSM8	100	94.792	ENSSHAG00000018435	-	100	94.792	Sarcophilus_harrisii
ENSLACG00000010231	LSM8	100	94.792	ENSSFOG00015004412	lsm8	100	94.792	Scleropages_formosus
ENSLACG00000010231	LSM8	78	93.333	ENSSMAG00000009458	lsm8	100	93.333	Scophthalmus_maximus
ENSLACG00000010231	LSM8	100	93.750	ENSSDUG00000014702	lsm8	100	93.750	Seriola_dumerili
ENSLACG00000010231	LSM8	78	96.000	ENSSLDG00000016870	lsm8	100	96.000	Seriola_lalandi_dorsalis
ENSLACG00000010231	LSM8	75	95.833	ENSSARG00000009628	-	100	95.833	Sorex_araneus
ENSLACG00000010231	LSM8	100	94.792	ENSSPUG00000017419	LSM8	100	94.792	Sphenodon_punctatus
ENSLACG00000010231	LSM8	100	93.750	ENSSPAG00000021422	lsm8	100	93.750	Stegastes_partitus
ENSLACG00000010231	LSM8	100	94.792	ENSSSCG00000021652	LSM8	100	94.792	Sus_scrofa
ENSLACG00000010231	LSM8	100	94.792	ENSTGUG00000004730	-	100	94.792	Taeniopygia_guttata
ENSLACG00000010231	LSM8	100	93.750	ENSTGUG00000016823	-	100	93.750	Taeniopygia_guttata
ENSLACG00000010231	LSM8	100	93.750	ENSTRUG00000025192	lsm8	100	93.750	Takifugu_rubripes
ENSLACG00000010231	LSM8	100	93.750	ENSTNIG00000002864	lsm8	100	93.750	Tetraodon_nigroviridis
ENSLACG00000010231	LSM8	100	94.792	ENSTTRG00000001023	LSM8	100	94.792	Tursiops_truncatus
ENSLACG00000010231	LSM8	92	92.045	ENSUAMG00000006943	-	92	92.045	Ursus_americanus
ENSLACG00000010231	LSM8	92	92.045	ENSUMAG00000003073	LSM8	94	92.045	Ursus_maritimus
ENSLACG00000010231	LSM8	100	94.792	ENSVPAG00000001530	LSM8	100	94.792	Vicugna_pacos
ENSLACG00000010231	LSM8	78	93.333	ENSVVUG00000013248	-	82	93.333	Vulpes_vulpes
ENSLACG00000010231	LSM8	93	94.382	ENSXETG00000021829	lsm8	92	94.382	Xenopus_tropicalis
ENSLACG00000010231	LSM8	100	92.708	ENSXCOG00000012938	lsm8	100	92.708	Xiphophorus_couchianus
ENSLACG00000010231	LSM8	100	94.792	ENSXMAG00000025919	lsm8	100	94.792	Xiphophorus_maculatus