EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000010479 (Gene tree)
Gene ID: 102361285
Gene Symbol: PRPF8
Alias: PRPC8|Prp8|RP13|SNRNP220|hPrp8
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 45342 bases
Position: chrJH127856.1:507246-552587
Accession: 102361285
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000011907	RRM_4	PF10598.9	2.3e-48	1	1
ENSLACP00000011906	RRM_4	PF10598.9	2.5e-48	1	1
ENSLACP00000011906	U5_2-snRNA_bdg	PF10597.9	4.4e-74	1	1
ENSLACP00000011907	U5_2-snRNA_bdg	PF10597.9	4.5e-74	1	1
ENSLACP00000011906	PRO8NT	PF08082.11	2.8e-62	1	1
ENSLACP00000011907	PRO8NT	PF08082.11	5.4e-30	1	1
ENSLACP00000011907	U6-snRNA_bdg	PF10596.9	1.1e-89	1	1
ENSLACP00000011906	U6-snRNA_bdg	PF10596.9	1.1e-89	1	1
ENSLACP00000011907	PROCN	PF08083.11	3e-234	1	1
ENSLACP00000011906	PROCN	PF08083.11	3.3e-234	1	1
ENSLACP00000011907	PRP8_domainIV	PF12134.8	2.5e-130	1	1
ENSLACP00000011906	PRP8_domainIV	PF12134.8	2.6e-130	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000011997	PRPF8-201	6771	-	ENSLACP00000011906	2213 (aa)	-	H3AQI5
ENSLACT00000011998	PRPF8-202	6926	XM_006006105	ENSLACP00000011907	2071 (aa)	-	H3AQI6

Gene Model

Click here to download ENSLACG00000010479's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000010479's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000010479	PRPF8	99	98.551	ENSG00000174231	PRPF8	100	91.839	Homo_sapiens
ENSLACG00000010479	PRPF8	99	98.261	ENSAPOG00000010079	prpf8	95	95.537	Acanthochromis_polyacanthus
ENSLACG00000010479	PRPF8	99	98.551	ENSAMEG00000007940	PRPF8	95	96.072	Ailuropoda_melanoleuca
ENSLACG00000010479	PRPF8	99	96.578	ENSACIG00000018280	prpf8	95	93.470	Amphilophus_citrinellus
ENSLACG00000010479	PRPF8	99	98.261	ENSAOCG00000010725	prpf8	95	95.491	Amphiprion_ocellaris
ENSLACG00000010479	PRPF8	99	98.261	ENSAPEG00000014397	prpf8	95	95.491	Amphiprion_percula
ENSLACG00000010479	PRPF8	99	97.681	ENSATEG00000010062	prpf8	95	94.998	Anabas_testudineus
ENSLACG00000010479	PRPF8	99	98.456	ENSAPLG00000010357	PRPF8	92	98.456	Anas_platyrhynchos
ENSLACG00000010479	PRPF8	86	96.604	ENSACAG00000014784	PRPF8	99	93.908	Anolis_carolinensis
ENSLACG00000010479	PRPF8	99	98.551	ENSANAG00000032629	PRPF8	95	96.072	Aotus_nancymaae
ENSLACG00000010479	PRPF8	99	98.213	ENSACLG00000020858	prpf8	95	95.112	Astatotilapia_calliptera
ENSLACG00000010479	PRPF8	99	98.213	ENSAMXG00000020291	prpf8	95	95.619	Astyanax_mexicanus
ENSLACG00000010479	PRPF8	99	98.551	ENSBTAG00000011488	PRPF8	95	96.072	Bos_taurus
ENSLACG00000010479	PRPF8	99	88.000	WBGene00004187	prp-8	95	85.346	Caenorhabditis_elegans
ENSLACG00000010479	PRPF8	99	98.551	ENSCJAG00000001911	PRPF8	95	96.072	Callithrix_jacchus
ENSLACG00000010479	PRPF8	99	98.551	ENSCAFG00000019221	PRPF8	95	96.072	Canis_familiaris
ENSLACG00000010479	PRPF8	99	98.551	ENSCAFG00020009943	PRPF8	95	96.511	Canis_lupus_dingo
ENSLACG00000010479	PRPF8	99	98.551	ENSCHIG00000017499	PRPF8	95	96.072	Capra_hircus
ENSLACG00000010479	PRPF8	99	98.551	ENSTSYG00000014120	PRPF8	95	96.072	Carlito_syrichta
ENSLACG00000010479	PRPF8	99	96.908	ENSCAPG00000009459	PRPF8	92	96.908	Cavia_aperea
ENSLACG00000010479	PRPF8	99	98.551	ENSCPOG00000010379	PRPF8	95	96.072	Cavia_porcellus
ENSLACG00000010479	PRPF8	99	98.551	ENSCCAG00000031983	-	95	96.072	Cebus_capucinus
ENSLACG00000010479	PRPF8	99	98.551	ENSCATG00000038595	PRPF8	95	96.072	Cercocebus_atys
ENSLACG00000010479	PRPF8	99	98.551	ENSCLAG00000004388	PRPF8	95	96.072	Chinchilla_lanigera
ENSLACG00000010479	PRPF8	99	98.551	ENSCSAG00000013929	PRPF8	95	96.072	Chlorocebus_sabaeus
ENSLACG00000010479	PRPF8	86	96.711	ENSCHOG00000008590	PRPF8	88	96.711	Choloepus_hoffmanni
ENSLACG00000010479	PRPF8	99	98.599	ENSCPBG00000020409	PRPF8	95	96.072	Chrysemys_picta_bellii
ENSLACG00000010479	PRPF8	99	93.350	ENSCSAVG00000007825	-	93	93.133	Ciona_savignyi
ENSLACG00000010479	PRPF8	99	98.551	ENSCANG00000043088	PRPF8	95	96.072	Colobus_angolensis_palliatus
ENSLACG00000010479	PRPF8	77	99.213	ENSCGRG00000005129	Prpf8	93	99.213	Cricetulus_griseus_crigri
ENSLACG00000010479	PRPF8	99	98.309	ENSCSEG00000007905	prpf8	95	95.539	Cynoglossus_semilaevis
ENSLACG00000010479	PRPF8	99	98.357	ENSDARG00000026180	prpf8	95	95.590	Danio_rerio
ENSLACG00000010479	PRPF8	98	98.569	ENSDNOG00000018471	PRPF8	99	96.044	Dasypus_novemcinctus
ENSLACG00000010479	PRPF8	81	97.308	ENSDORG00000006185	Prpf8	90	93.683	Dipodomys_ordii
ENSLACG00000010479	PRPF8	99	92.516	FBgn0033688	Prp8	92	89.738	Drosophila_melanogaster
ENSLACG00000010479	PRPF8	98	95.153	ENSETEG00000017592	PRPF8	93	92.857	Echinops_telfairi
ENSLACG00000010479	PRPF8	99	94.254	ENSEBUG00000006548	prpf8	94	91.565	Eptatretus_burgeri
ENSLACG00000010479	PRPF8	99	98.551	ENSEASG00005009514	PRPF8	99	95.110	Equus_asinus_asinus
ENSLACG00000010479	PRPF8	99	98.551	ENSECAG00000021318	PRPF8	95	96.381	Equus_caballus
ENSLACG00000010479	PRPF8	68	100.000	ENSEEUG00000012120	-	63	100.000	Erinaceus_europaeus
ENSLACG00000010479	PRPF8	100	98.165	ENSELUG00000007120	prpf8	97	95.537	Esox_lucius
ENSLACG00000010479	PRPF8	99	98.551	ENSFCAG00000006297	PRPF8	95	96.072	Felis_catus
ENSLACG00000010479	PRPF8	99	98.599	ENSFALG00000006628	PRPF8	95	96.117	Ficedula_albicollis
ENSLACG00000010479	PRPF8	99	98.551	ENSFDAG00000004711	PRPF8	95	96.072	Fukomys_damarensis
ENSLACG00000010479	PRPF8	99	98.213	ENSFHEG00000021084	prpf8	95	95.320	Fundulus_heteroclitus
ENSLACG00000010479	PRPF8	99	96.135	ENSGMOG00000002028	prpf8	95	93.452	Gadus_morhua
ENSLACG00000010479	PRPF8	99	98.599	ENSGALG00000002943	PRPF8	95	96.072	Gallus_gallus
ENSLACG00000010479	PRPF8	99	98.309	ENSGAFG00000010337	prpf8	94	95.824	Gambusia_affinis
ENSLACG00000010479	PRPF8	99	98.261	ENSGACG00000008504	prpf8	95	95.528	Gasterosteus_aculeatus
ENSLACG00000010479	PRPF8	99	98.599	ENSGAGG00000008350	PRPF8	95	96.072	Gopherus_agassizii
ENSLACG00000010479	PRPF8	99	98.551	ENSGGOG00000005516	PRPF8	95	96.072	Gorilla_gorilla
ENSLACG00000010479	PRPF8	99	98.261	ENSHBUG00000016192	prpf8	95	95.528	Haplochromis_burtoni
ENSLACG00000010479	PRPF8	99	98.551	ENSHGLG00000012029	PRPF8	95	96.072	Heterocephalus_glaber_female
ENSLACG00000010479	PRPF8	99	98.551	ENSHGLG00100016494	PRPF8	95	96.072	Heterocephalus_glaber_male
ENSLACG00000010479	PRPF8	99	98.164	ENSHCOG00000016414	prpf8	95	95.403	Hippocampus_comes
ENSLACG00000010479	PRPF8	99	98.116	ENSIPUG00000023230	prpf8	95	95.491	Ictalurus_punctatus
ENSLACG00000010479	PRPF8	99	98.551	ENSSTOG00000005128	PRPF8	95	96.072	Ictidomys_tridecemlineatus
ENSLACG00000010479	PRPF8	99	96.135	ENSJJAG00000021159	Prpf8	95	93.815	Jaculus_jaculus
ENSLACG00000010479	PRPF8	99	98.309	ENSKMAG00000016118	prpf8	94	95.739	Kryptolebias_marmoratus
ENSLACG00000010479	PRPF8	99	98.164	ENSLBEG00000026903	prpf8	95	95.446	Labrus_bergylta
ENSLACG00000010479	PRPF8	99	98.213	ENSLOCG00000005409	prpf8	95	95.532	Lepisosteus_oculatus
ENSLACG00000010479	PRPF8	99	98.551	ENSLAFG00000015445	PRPF8	95	96.072	Loxodonta_africana
ENSLACG00000010479	PRPF8	99	98.551	ENSMFAG00000039995	PRPF8	95	96.072	Macaca_fascicularis
ENSLACG00000010479	PRPF8	99	98.551	ENSMMUG00000004820	PRPF8	95	96.072	Macaca_mulatta
ENSLACG00000010479	PRPF8	99	98.551	ENSMNEG00000035713	PRPF8	95	96.072	Macaca_nemestrina
ENSLACG00000010479	PRPF8	99	98.551	ENSMLEG00000037937	PRPF8	95	96.072	Mandrillus_leucophaeus
ENSLACG00000010479	PRPF8	99	98.261	ENSMAMG00000008919	prpf8	95	95.493	Mastacembelus_armatus
ENSLACG00000010479	PRPF8	99	98.213	ENSMZEG00005015073	prpf8	95	95.112	Maylandia_zebra
ENSLACG00000010479	PRPF8	99	98.599	ENSMGAG00000004769	PRPF8	95	96.072	Meleagris_gallopavo
ENSLACG00000010479	PRPF8	99	98.551	ENSMICG00000010320	PRPF8	95	96.072	Microcebus_murinus
ENSLACG00000010479	PRPF8	99	98.551	ENSMOCG00000016838	Prpf8	95	96.072	Microtus_ochrogaster
ENSLACG00000010479	PRPF8	99	97.826	ENSMMOG00000011887	prpf8	95	95.133	Mola_mola
ENSLACG00000010479	PRPF8	99	98.551	ENSMODG00000010480	PRPF8	95	96.027	Monodelphis_domestica
ENSLACG00000010479	PRPF8	97	98.049	ENSMALG00000003558	prpf8	95	97.842	Monopterus_albus
ENSLACG00000010479	PRPF8	99	98.502	MGP_CAROLIEiJ_G0016740	Prpf8	100	91.985	Mus_caroli
ENSLACG00000010479	PRPF8	99	98.502	ENSMUSG00000020850	Prpf8	100	91.985	Mus_musculus
ENSLACG00000010479	PRPF8	99	98.551	MGP_PahariEiJ_G0017877	Prpf8	100	92.077	Mus_pahari
ENSLACG00000010479	PRPF8	99	98.502	MGP_SPRETEiJ_G0017583	Prpf8	100	91.985	Mus_spretus
ENSLACG00000010479	PRPF8	99	98.551	ENSMPUG00000013227	PRPF8	95	96.072	Mustela_putorius_furo
ENSLACG00000010479	PRPF8	99	98.551	ENSMLUG00000002666	PRPF8	95	96.074	Myotis_lucifugus
ENSLACG00000010479	PRPF8	99	96.570	ENSNGAG00000005305	Prpf8	95	94.221	Nannospalax_galili
ENSLACG00000010479	PRPF8	99	98.261	ENSNBRG00000013127	prpf8	95	95.157	Neolamprologus_brichardi
ENSLACG00000010479	PRPF8	97	97.645	ENSNLEG00000000897	PRPF8	93	97.508	Nomascus_leucogenys
ENSLACG00000010479	PRPF8	99	96.570	ENSMEUG00000015999	PRPF8	95	94.544	Notamacropus_eugenii
ENSLACG00000010479	PRPF8	99	98.261	ENSOPRG00000003102	PRPF8	95	94.492	Ochotona_princeps
ENSLACG00000010479	PRPF8	99	98.551	ENSODEG00000008468	PRPF8	95	96.072	Octodon_degus
ENSLACG00000010479	PRPF8	99	98.213	ENSONIG00000008153	prpf8	95	95.069	Oreochromis_niloticus
ENSLACG00000010479	PRPF8	87	99.584	ENSOANG00000004250	PRPF8	92	99.584	Ornithorhynchus_anatinus
ENSLACG00000010479	PRPF8	99	98.551	ENSOCUG00000000081	PRPF8	95	96.072	Oryctolagus_cuniculus
ENSLACG00000010479	PRPF8	99	98.261	ENSORLG00000008036	prpf8	95	94.763	Oryzias_latipes
ENSLACG00000010479	PRPF8	99	98.213	ENSORLG00020021070	prpf8	95	94.720	Oryzias_latipes_hni
ENSLACG00000010479	PRPF8	99	98.261	ENSORLG00015002340	prpf8	95	94.763	Oryzias_latipes_hsok
ENSLACG00000010479	PRPF8	99	96.377	ENSOMEG00000016866	prpf8	95	92.927	Oryzias_melastigma
ENSLACG00000010479	PRPF8	99	98.408	ENSOARG00000013312	PRPF8	95	95.942	Ovis_aries
ENSLACG00000010479	PRPF8	99	98.551	ENSPPAG00000042753	PRPF8	95	96.072	Pan_paniscus
ENSLACG00000010479	PRPF8	99	98.551	ENSPPRG00000008746	PRPF8	95	96.072	Panthera_pardus
ENSLACG00000010479	PRPF8	99	98.454	ENSPTIG00000019200	PRPF8	95	95.982	Panthera_tigris_altaica
ENSLACG00000010479	PRPF8	99	98.551	ENSPTRG00000039576	PRPF8	95	96.072	Pan_troglodytes
ENSLACG00000010479	PRPF8	99	98.551	ENSPANG00000024607	PRPF8	93	96.425	Papio_anubis
ENSLACG00000010479	PRPF8	99	98.357	ENSPKIG00000011201	prpf8	95	95.285	Paramormyrops_kingsleyae
ENSLACG00000010479	PRPF8	99	98.551	ENSPSIG00000013393	PRPF8	95	96.027	Pelodiscus_sinensis
ENSLACG00000010479	PRPF8	99	98.551	ENSPEMG00000021699	Prpf8	95	96.072	Peromyscus_maniculatus_bairdii
ENSLACG00000010479	PRPF8	99	94.203	ENSPMAG00000005438	prpf8	94	92.315	Petromyzon_marinus
ENSLACG00000010479	PRPF8	99	98.551	ENSPCIG00000022603	PRPF8	95	96.511	Phascolarctos_cinereus
ENSLACG00000010479	PRPF8	99	98.357	ENSPFOG00000007005	prpf8	95	94.817	Poecilia_formosa
ENSLACG00000010479	PRPF8	99	96.763	ENSPLAG00000020777	prpf8	95	94.354	Poecilia_latipinna
ENSLACG00000010479	PRPF8	99	98.357	ENSPMEG00000004051	prpf8	95	94.817	Poecilia_mexicana
ENSLACG00000010479	PRPF8	99	98.261	ENSPREG00000021902	prpf8	95	95.754	Poecilia_reticulata
ENSLACG00000010479	PRPF8	99	98.551	ENSPPYG00000007777	PRPF8	95	96.072	Pongo_abelii
ENSLACG00000010479	PRPF8	89	98.246	ENSPCAG00000008938	PRPF8	85	97.535	Procavia_capensis
ENSLACG00000010479	PRPF8	99	98.551	ENSPCOG00000015182	PRPF8	95	96.072	Propithecus_coquereli
ENSLACG00000010479	PRPF8	95	98.560	ENSPVAG00000002134	PRPF8	90	98.560	Pteropus_vampyrus
ENSLACG00000010479	PRPF8	99	98.261	ENSPNYG00000016356	prpf8	95	95.528	Pundamilia_nyererei
ENSLACG00000010479	PRPF8	99	98.357	ENSPNAG00000009247	prpf8	95	95.629	Pygocentrus_nattereri
ENSLACG00000010479	PRPF8	99	98.502	ENSRNOG00000003495	Prpf8	95	96.027	Rattus_norvegicus
ENSLACG00000010479	PRPF8	99	98.551	ENSRBIG00000031219	PRPF8	95	96.072	Rhinopithecus_bieti
ENSLACG00000010479	PRPF8	99	98.551	ENSRROG00000038014	PRPF8	95	96.072	Rhinopithecus_roxellana
ENSLACG00000010479	PRPF8	99	64.093	YHR165C	PRP8	90	62.312	Saccharomyces_cerevisiae
ENSLACG00000010479	PRPF8	99	98.551	ENSSBOG00000029717	PRPF8	95	96.072	Saimiri_boliviensis_boliviensis
ENSLACG00000010479	PRPF8	99	98.551	ENSSHAG00000006167	PRPF8	95	96.027	Sarcophilus_harrisii
ENSLACG00000010479	PRPF8	99	98.309	ENSSFOG00015013905	prpf8	95	95.412	Scleropages_formosus
ENSLACG00000010479	PRPF8	99	98.116	ENSSMAG00000017736	prpf8	95	95.356	Scophthalmus_maximus
ENSLACG00000010479	PRPF8	99	98.213	ENSSDUG00000003029	prpf8	95	95.493	Seriola_dumerili
ENSLACG00000010479	PRPF8	71	98.851	ENSSLDG00000017096	prpf8	93	98.851	Seriola_lalandi_dorsalis
ENSLACG00000010479	PRPF8	86	95.534	ENSSARG00000002892	PRPF8	82	94.193	Sorex_araneus
ENSLACG00000010479	PRPF8	99	98.406	ENSSPUG00000007463	PRPF8	95	95.756	Sphenodon_punctatus
ENSLACG00000010479	PRPF8	99	97.585	ENSSPAG00000015639	prpf8	95	94.905	Stegastes_partitus
ENSLACG00000010479	PRPF8	99	98.551	ENSSSCG00000017817	PRPF8	95	96.072	Sus_scrofa
ENSLACG00000010479	PRPF8	58	98.429	ENSTGUG00000015597	-	95	98.429	Taeniopygia_guttata
ENSLACG00000010479	PRPF8	99	98.599	ENSTGUG00000005648	-	95	96.117	Taeniopygia_guttata
ENSLACG00000010479	PRPF8	99	98.116	ENSTRUG00000015906	prpf8	95	95.401	Takifugu_rubripes
ENSLACG00000010479	PRPF8	94	98.778	ENSTNIG00000003460	prpf8	94	98.649	Tetraodon_nigroviridis
ENSLACG00000010479	PRPF8	92	98.911	ENSTBEG00000006431	PRPF8	87	98.911	Tupaia_belangeri
ENSLACG00000010479	PRPF8	99	97.923	ENSTTRG00000006869	PRPF8	95	95.485	Tursiops_truncatus
ENSLACG00000010479	PRPF8	54	96.967	ENSUAMG00000015644	-	96	93.487	Ursus_americanus
ENSLACG00000010479	PRPF8	99	98.261	ENSUMAG00000009385	PRPF8	95	95.801	Ursus_maritimus
ENSLACG00000010479	PRPF8	67	98.596	ENSVPAG00000006063	-	61	97.931	Vicugna_pacos
ENSLACG00000010479	PRPF8	99	98.551	ENSVVUG00000021695	PRPF8	94	96.072	Vulpes_vulpes
ENSLACG00000010479	PRPF8	99	98.455	ENSXETG00000022259	prpf8	95	95.758	Xenopus_tropicalis
ENSLACG00000010479	PRPF8	99	98.261	ENSXCOG00000012775	prpf8	95	95.452	Xiphophorus_couchianus
ENSLACG00000010479	PRPF8	99	98.309	ENSXMAG00000008505	prpf8	95	95.498	Xiphophorus_maculatus