EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000010521 (Gene tree)
Gene ID: 102366362
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 46740 bases
Position: chrJH127704.1:511449-558188
Accession: 102366362
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000011954	EST1	PF10374.9	2.5e-23	1	1
ENSLACP00000011954	EST1_DNA_bind	PF10373.9	1.7e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000012045	SMG5-201	5761	XM_006005117	ENSLACP00000011954	1046 (aa)	-	H3AQN3

Gene Model

Click here to download ENSLACG00000010521's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000010521's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000010521	SMG5	100	64.862	ENSG00000198952	SMG5	100	64.957	Homo_sapiens
ENSLACG00000010521	SMG5	99	60.383	ENSAPOG00000019690	smg5	99	60.134	Acanthochromis_polyacanthus
ENSLACG00000010521	SMG5	97	63.824	ENSAMEG00000014458	SMG5	99	64.075	Ailuropoda_melanoleuca
ENSLACG00000010521	SMG5	99	59.621	ENSACIG00000001353	smg5	99	59.716	Amphilophus_citrinellus
ENSLACG00000010521	SMG5	99	57.257	ENSAOCG00000019483	smg5	99	57.811	Amphiprion_ocellaris
ENSLACG00000010521	SMG5	97	60.840	ENSAPEG00000022949	smg5	97	60.174	Amphiprion_percula
ENSLACG00000010521	SMG5	99	59.375	ENSATEG00000005348	smg5	99	58.702	Anabas_testudineus
ENSLACG00000010521	SMG5	97	68.952	ENSAPLG00000010263	SMG5	99	68.952	Anas_platyrhynchos
ENSLACG00000010521	SMG5	100	64.728	ENSANAG00000032899	SMG5	100	64.919	Aotus_nancymaae
ENSLACG00000010521	SMG5	99	59.130	ENSACLG00000009311	smg5	99	59.546	Astatotilapia_calliptera
ENSLACG00000010521	SMG5	99	57.734	ENSAMXG00000024616	smg5	99	58.416	Astyanax_mexicanus
ENSLACG00000010521	SMG5	100	64.633	ENSBTAG00000009435	SMG5	100	64.728	Bos_taurus
ENSLACG00000010521	SMG5	100	64.824	ENSCJAG00000005684	SMG5	100	65.014	Callithrix_jacchus
ENSLACG00000010521	SMG5	100	63.878	ENSCAFG00000016839	SMG5	100	63.019	Canis_familiaris
ENSLACG00000010521	SMG5	100	63.878	ENSCAFG00020006061	SMG5	100	63.019	Canis_lupus_dingo
ENSLACG00000010521	SMG5	100	64.633	ENSCHIG00000007709	SMG5	100	64.633	Capra_hircus
ENSLACG00000010521	SMG5	100	64.986	ENSTSYG00000004099	SMG5	100	64.550	Carlito_syrichta
ENSLACG00000010521	SMG5	95	49.194	ENSCAPG00000003631	SMG5	100	48.992	Cavia_aperea
ENSLACG00000010521	SMG5	100	64.482	ENSCPOG00000015696	SMG5	100	64.510	Cavia_porcellus
ENSLACG00000010521	SMG5	100	64.919	ENSCCAG00000027409	SMG5	100	65.110	Cebus_capucinus
ENSLACG00000010521	SMG5	100	64.862	ENSCATG00000030539	SMG5	100	64.957	Cercocebus_atys
ENSLACG00000010521	SMG5	100	65.024	ENSCLAG00000003983	SMG5	100	64.739	Chinchilla_lanigera
ENSLACG00000010521	SMG5	100	64.862	ENSCSAG00000002120	SMG5	100	64.957	Chlorocebus_sabaeus
ENSLACG00000010521	SMG5	52	72.388	ENSCHOG00000008741	-	56	72.388	Choloepus_hoffmanni
ENSLACG00000010521	SMG5	94	70.374	ENSCPBG00000025848	SMG5	100	70.464	Chrysemys_picta_bellii
ENSLACG00000010521	SMG5	100	62.393	ENSCANG00000029208	SMG5	100	62.583	Colobus_angolensis_palliatus
ENSLACG00000010521	SMG5	100	64.415	ENSCGRG00001006336	Smg5	100	64.415	Cricetulus_griseus_chok1gshd
ENSLACG00000010521	SMG5	97	64.735	ENSCGRG00000005111	Smg5	99	64.862	Cricetulus_griseus_crigri
ENSLACG00000010521	SMG5	99	57.725	ENSCSEG00000014220	smg5	99	57.820	Cynoglossus_semilaevis
ENSLACG00000010521	SMG5	99	54.588	ENSCVAG00000000529	smg5	99	53.636	Cyprinodon_variegatus
ENSLACG00000010521	SMG5	99	57.909	ENSDARG00000041481	smg5	99	58.333	Danio_rerio
ENSLACG00000010521	SMG5	100	61.582	ENSDNOG00000000051	SMG5	100	61.582	Dasypus_novemcinctus
ENSLACG00000010521	SMG5	93	32.202	ENSDNOG00000039862	-	92	37.629	Dasypus_novemcinctus
ENSLACG00000010521	SMG5	100	64.482	ENSDORG00000010382	Smg5	100	64.482	Dipodomys_ordii
ENSLACG00000010521	SMG5	83	60.677	ENSETEG00000010336	SMG5	91	60.365	Echinops_telfairi
ENSLACG00000010521	SMG5	100	64.700	ENSEASG00005019122	SMG5	100	64.510	Equus_asinus_asinus
ENSLACG00000010521	SMG5	100	64.795	ENSECAG00000001389	SMG5	100	64.605	Equus_caballus
ENSLACG00000010521	SMG5	69	81.065	ENSEEUG00000012690	SMG5	74	81.065	Erinaceus_europaeus
ENSLACG00000010521	SMG5	99	60.494	ENSELUG00000012585	smg5	99	59.411	Esox_lucius
ENSLACG00000010521	SMG5	100	63.749	ENSFCAG00000011783	SMG5	100	63.844	Felis_catus
ENSLACG00000010521	SMG5	59	70.550	ENSFALG00000001166	-	100	72.927	Ficedula_albicollis
ENSLACG00000010521	SMG5	97	64.971	ENSFDAG00000017388	SMG5	99	64.907	Fukomys_damarensis
ENSLACG00000010521	SMG5	95	57.186	ENSFHEG00000013939	smg5	98	56.461	Fundulus_heteroclitus
ENSLACG00000010521	SMG5	99	56.294	ENSGMOG00000007310	smg5	99	56.676	Gadus_morhua
ENSLACG00000010521	SMG5	99	68.008	ENSGALG00000029918	-	100	67.644	Gallus_gallus
ENSLACG00000010521	SMG5	99	52.538	ENSGAFG00000021691	smg5	99	51.908	Gambusia_affinis
ENSLACG00000010521	SMG5	99	56.723	ENSGACG00000013142	smg5	99	57.487	Gasterosteus_aculeatus
ENSLACG00000010521	SMG5	100	68.774	ENSGAGG00000016131	SMG5	100	68.685	Gopherus_agassizii
ENSLACG00000010521	SMG5	100	64.919	ENSGGOG00000010932	SMG5	100	65.110	Gorilla_gorilla
ENSLACG00000010521	SMG5	99	59.375	ENSHBUG00000008654	smg5	99	59.641	Haplochromis_burtoni
ENSLACG00000010521	SMG5	100	64.544	ENSHGLG00000019152	SMG5	100	64.103	Heterocephalus_glaber_female
ENSLACG00000010521	SMG5	90	64.263	ENSHGLG00100015948	SMG5	99	63.771	Heterocephalus_glaber_male
ENSLACG00000010521	SMG5	84	68.814	ENSHCOG00000010229	smg5	91	68.814	Hippocampus_comes
ENSLACG00000010521	SMG5	99	56.396	ENSIPUG00000006624	Smg5	99	56.900	Ictalurus_punctatus
ENSLACG00000010521	SMG5	100	64.387	ENSSTOG00000001780	SMG5	100	64.700	Ictidomys_tridecemlineatus
ENSLACG00000010521	SMG5	100	64.252	ENSJJAG00000022763	Smg5	100	64.265	Jaculus_jaculus
ENSLACG00000010521	SMG5	99	57.294	ENSKMAG00000014586	smg5	99	57.383	Kryptolebias_marmoratus
ENSLACG00000010521	SMG5	99	58.365	ENSLBEG00000002145	smg5	99	58.177	Labrus_bergylta
ENSLACG00000010521	SMG5	99	64.464	ENSLAFG00000006241	SMG5	99	64.655	Loxodonta_africana
ENSLACG00000010521	SMG5	100	64.862	ENSMFAG00000045357	SMG5	100	64.957	Macaca_fascicularis
ENSLACG00000010521	SMG5	100	64.862	ENSMMUG00000000090	SMG5	100	64.862	Macaca_mulatta
ENSLACG00000010521	SMG5	100	64.957	ENSMNEG00000044425	SMG5	100	65.052	Macaca_nemestrina
ENSLACG00000010521	SMG5	100	59.413	ENSMLEG00000041192	SMG5	100	59.508	Mandrillus_leucophaeus
ENSLACG00000010521	SMG5	99	56.816	ENSMAMG00000010683	smg5	100	57.792	Mastacembelus_armatus
ENSLACG00000010521	SMG5	64	52.276	ENSMZEG00005016543	smg5	100	52.655	Maylandia_zebra
ENSLACG00000010521	SMG5	99	57.343	ENSMZEG00005015815	smg5	99	57.598	Maylandia_zebra
ENSLACG00000010521	SMG5	100	63.680	ENSMAUG00000010381	Smg5	100	63.533	Mesocricetus_auratus
ENSLACG00000010521	SMG5	100	64.728	ENSMICG00000002257	SMG5	100	64.633	Microcebus_murinus
ENSLACG00000010521	SMG5	100	63.852	ENSMOCG00000016590	Smg5	100	63.283	Microtus_ochrogaster
ENSLACG00000010521	SMG5	99	56.183	ENSMMOG00000017199	smg5	99	56.720	Mola_mola
ENSLACG00000010521	SMG5	97	31.655	ENSMODG00000004511	-	83	35.657	Monodelphis_domestica
ENSLACG00000010521	SMG5	73	34.527	ENSMODG00000004735	-	86	34.527	Monodelphis_domestica
ENSLACG00000010521	SMG5	76	33.661	ENSMODG00000004532	-	87	33.661	Monodelphis_domestica
ENSLACG00000010521	SMG5	88	64.418	ENSMODG00000016901	SMG5	98	64.635	Monodelphis_domestica
ENSLACG00000010521	SMG5	73	35.356	ENSMODG00000010675	-	85	35.092	Monodelphis_domestica
ENSLACG00000010521	SMG5	99	56.625	ENSMALG00000010375	smg5	99	55.300	Monopterus_albus
ENSLACG00000010521	SMG5	100	64.510	MGP_CAROLIEiJ_G0025163	Smg5	100	88.827	Mus_caroli
ENSLACG00000010521	SMG5	100	64.129	ENSMUSG00000001415	Smg5	99	88.827	Mus_musculus
ENSLACG00000010521	SMG5	100	64.171	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSLACG00000010521	SMG5	100	64.225	MGP_SPRETEiJ_G0026104	Smg5	100	88.827	Mus_spretus
ENSLACG00000010521	SMG5	94	63.415	ENSMPUG00000004546	SMG5	100	63.516	Mustela_putorius_furo
ENSLACG00000010521	SMG5	100	64.829	ENSMLUG00000008518	SMG5	100	64.245	Myotis_lucifugus
ENSLACG00000010521	SMG5	100	64.510	ENSNGAG00000020706	Smg5	100	64.415	Nannospalax_galili
ENSLACG00000010521	SMG5	96	57.311	ENSNBRG00000004332	smg5	97	56.962	Neolamprologus_brichardi
ENSLACG00000010521	SMG5	100	64.672	ENSNLEG00000012439	SMG5	100	64.767	Nomascus_leucogenys
ENSLACG00000010521	SMG5	100	64.252	ENSMEUG00000012834	SMG5	100	64.156	Notamacropus_eugenii
ENSLACG00000010521	SMG5	100	63.688	ENSOPRG00000009152	SMG5	100	63.593	Ochotona_princeps
ENSLACG00000010521	SMG5	100	65.242	ENSODEG00000012237	SMG5	100	64.292	Octodon_degus
ENSLACG00000010521	SMG5	99	57.293	ENSONIG00000008632	smg5	99	57.458	Oreochromis_niloticus
ENSLACG00000010521	SMG5	90	33.824	ENSOCUG00000023338	-	84	44.529	Oryctolagus_cuniculus
ENSLACG00000010521	SMG5	97	64.926	ENSOCUG00000012886	SMG5	99	64.665	Oryctolagus_cuniculus
ENSLACG00000010521	SMG5	99	58.365	ENSORLG00020013127	smg5	99	59.431	Oryzias_latipes_hni
ENSLACG00000010521	SMG5	99	58.389	ENSORLG00015019014	smg5	99	59.452	Oryzias_latipes_hsok
ENSLACG00000010521	SMG5	82	57.249	ENSOMEG00000021330	smg5	92	57.754	Oryzias_melastigma
ENSLACG00000010521	SMG5	100	63.714	ENSOGAG00000004966	SMG5	100	63.765	Otolemur_garnettii
ENSLACG00000010521	SMG5	100	64.538	ENSOARG00000005778	SMG5	100	64.538	Ovis_aries
ENSLACG00000010521	SMG5	100	64.957	ENSPPAG00000011996	SMG5	100	65.052	Pan_paniscus
ENSLACG00000010521	SMG5	97	63.878	ENSPPRG00000011901	SMG5	99	63.878	Panthera_pardus
ENSLACG00000010521	SMG5	96	59.484	ENSPTIG00000007892	SMG5	97	59.484	Panthera_tigris_altaica
ENSLACG00000010521	SMG5	100	64.957	ENSPTRG00000023925	SMG5	100	65.052	Pan_troglodytes
ENSLACG00000010521	SMG5	90	81.065	ENSPTRG00000049282	-	100	65.052	Pan_troglodytes
ENSLACG00000010521	SMG5	100	64.862	ENSPANG00000011201	SMG5	100	64.957	Papio_anubis
ENSLACG00000010521	SMG5	99	59.810	ENSPKIG00000009402	smg5	99	59.885	Paramormyrops_kingsleyae
ENSLACG00000010521	SMG5	97	69.727	ENSPSIG00000015198	SMG5	99	69.617	Pelodiscus_sinensis
ENSLACG00000010521	SMG5	99	54.595	ENSPMGG00000010465	smg5	99	54.242	Periophthalmus_magnuspinnatus
ENSLACG00000010521	SMG5	100	64.320	ENSPEMG00000001819	Smg5	100	64.129	Peromyscus_maniculatus_bairdii
ENSLACG00000010521	SMG5	54	44.071	ENSPEMG00000010022	-	68	51.385	Peromyscus_maniculatus_bairdii
ENSLACG00000010521	SMG5	99	46.748	ENSPMAG00000000410	smg5	99	47.378	Petromyzon_marinus
ENSLACG00000010521	SMG5	100	65.682	ENSPCIG00000018938	SMG5	100	65.872	Phascolarctos_cinereus
ENSLACG00000010521	SMG5	99	57.689	ENSPFOG00000010191	smg5	99	57.080	Poecilia_formosa
ENSLACG00000010521	SMG5	99	57.778	ENSPLAG00000009332	smg5	99	57.244	Poecilia_latipinna
ENSLACG00000010521	SMG5	99	60.076	ENSPMEG00000014105	smg5	99	59.546	Poecilia_mexicana
ENSLACG00000010521	SMG5	99	57.511	ENSPREG00000017713	smg5	99	57.067	Poecilia_reticulata
ENSLACG00000010521	SMG5	100	64.957	ENSPPYG00000000723	SMG5	100	65.052	Pongo_abelii
ENSLACG00000010521	SMG5	82	74.370	ENSPCAG00000008412	SMG5	88	74.370	Procavia_capensis
ENSLACG00000010521	SMG5	100	64.862	ENSPCOG00000004741	SMG5	100	64.672	Propithecus_coquereli
ENSLACG00000010521	SMG5	100	57.674	ENSPVAG00000016748	SMG5	100	57.564	Pteropus_vampyrus
ENSLACG00000010521	SMG5	99	56.629	ENSPNYG00000013397	smg5	99	56.602	Pundamilia_nyererei
ENSLACG00000010521	SMG5	99	58.702	ENSPNAG00000028363	smg5	99	58.047	Pygocentrus_nattereri
ENSLACG00000010521	SMG5	100	64.605	ENSRNOG00000019590	Smg5	100	64.008	Rattus_norvegicus
ENSLACG00000010521	SMG5	100	64.862	ENSRBIG00000027428	SMG5	100	64.957	Rhinopithecus_bieti
ENSLACG00000010521	SMG5	100	64.862	ENSRROG00000030035	SMG5	100	64.957	Rhinopithecus_roxellana
ENSLACG00000010521	SMG5	100	65.014	ENSSBOG00000033339	SMG5	100	65.205	Saimiri_boliviensis_boliviensis
ENSLACG00000010521	SMG5	76	35.411	ENSSHAG00000000561	-	87	35.411	Sarcophilus_harrisii
ENSLACG00000010521	SMG5	97	65.784	ENSSHAG00000014163	SMG5	99	65.980	Sarcophilus_harrisii
ENSLACG00000010521	SMG5	80	38.479	ENSSHAG00000009572	-	83	39.140	Sarcophilus_harrisii
ENSLACG00000010521	SMG5	54	36.224	ENSSHAG00000000935	-	82	36.224	Sarcophilus_harrisii
ENSLACG00000010521	SMG5	99	60.531	ENSSFOG00015024175	smg5	99	61.349	Scleropages_formosus
ENSLACG00000010521	SMG5	99	56.372	ENSSMAG00000013059	smg5	99	56.941	Scophthalmus_maximus
ENSLACG00000010521	SMG5	99	56.552	ENSSDUG00000007122	smg5	99	57.105	Seriola_dumerili
ENSLACG00000010521	SMG5	99	56.664	ENSSLDG00000011418	smg5	99	57.306	Seriola_lalandi_dorsalis
ENSLACG00000010521	SMG5	91	54.507	ENSSARG00000012484	SMG5	100	54.298	Sorex_araneus
ENSLACG00000010521	SMG5	94	69.215	ENSSPUG00000002260	SMG5	100	68.342	Sphenodon_punctatus
ENSLACG00000010521	SMG5	97	59.923	ENSSPAG00000014266	smg5	99	57.621	Stegastes_partitus
ENSLACG00000010521	SMG5	99	51.238	ENSSSCG00000039308	-	100	51.192	Sus_scrofa
ENSLACG00000010521	SMG5	100	65.014	ENSSSCG00000006490	-	100	65.549	Sus_scrofa
ENSLACG00000010521	SMG5	99	68.654	ENSTGUG00000003748	-	100	68.251	Taeniopygia_guttata
ENSLACG00000010521	SMG5	99	58.483	ENSTRUG00000012580	smg5	99	58.585	Takifugu_rubripes
ENSLACG00000010521	SMG5	99	59.829	ENSTNIG00000010303	smg5	99	59.848	Tetraodon_nigroviridis
ENSLACG00000010521	SMG5	56	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSLACG00000010521	SMG5	100	63.333	ENSTTRG00000001401	SMG5	100	63.118	Tursiops_truncatus
ENSLACG00000010521	SMG5	100	63.654	ENSUAMG00000013721	SMG5	100	63.749	Ursus_americanus
ENSLACG00000010521	SMG5	97	61.176	ENSUMAG00000018041	SMG5	97	60.531	Ursus_maritimus
ENSLACG00000010521	SMG5	91	60.590	ENSVPAG00000009446	SMG5	92	60.568	Vicugna_pacos
ENSLACG00000010521	SMG5	100	63.973	ENSVVUG00000005887	SMG5	100	63.939	Vulpes_vulpes
ENSLACG00000010521	SMG5	77	59.119	ENSXETG00000033791	SMG5	99	58.017	Xenopus_tropicalis
ENSLACG00000010521	SMG5	78	56.710	ENSXCOG00000004379	smg5	99	54.787	Xiphophorus_couchianus
ENSLACG00000010521	SMG5	99	58.451	ENSXMAG00000013499	smg5	99	57.989	Xiphophorus_maculatus