EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000010698 (Gene tree)
Gene ID: -
Gene Symbol: HFM1
Alias: FLJ36760|FLJ39011|MER3|SEC63D1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 104100 bases
Position: chrJH127228.1:526594-630693
Accession: 102347985
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000012153	ResIII	PF04851.15	2.8e-11	1	1
ENSLACP00000012153	DEAD	PF00270.29	3.3e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000012245	HFM1-201	3177	XM_006001082	ENSLACP00000012153	1059 (aa)	-	H3AR82

Gene Model

Click here to download ENSLACG00000010698's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000010698's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000010698	HFM1	69	31.558	ENSLACG00000000226	SNRNP200	78	31.186
ENSLACG00000010698	HFM1	60	32.362	ENSLACG00000015253	ascc3	60	31.921

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000010698	HFM1	99	67.014	ENSG00000162669	HFM1	66	70.868	Homo_sapiens
ENSLACG00000010698	HFM1	79	69.019	ENSAPOG00000005304	hfm1	93	69.019	Acanthochromis_polyacanthus
ENSLACG00000010698	HFM1	99	66.792	ENSAMEG00000000432	HFM1	68	69.657	Ailuropoda_melanoleuca
ENSLACG00000010698	HFM1	99	60.825	ENSACIG00000021553	hfm1	83	65.364	Amphilophus_citrinellus
ENSLACG00000010698	HFM1	79	68.750	ENSAOCG00000022839	hfm1	96	70.463	Amphiprion_ocellaris
ENSLACG00000010698	HFM1	79	68.389	ENSAPEG00000014316	hfm1	96	70.389	Amphiprion_percula
ENSLACG00000010698	HFM1	99	61.735	ENSATEG00000019181	hfm1	82	64.643	Anabas_testudineus
ENSLACG00000010698	HFM1	100	66.291	ENSAPLG00000013639	HFM1	66	70.504	Anas_platyrhynchos
ENSLACG00000010698	HFM1	99	65.690	ENSANAG00000029513	HFM1	66	69.556	Aotus_nancymaae
ENSLACG00000010698	HFM1	89	65.259	ENSACLG00000009033	hfm1	95	67.509	Astatotilapia_calliptera
ENSLACG00000010698	HFM1	100	60.830	ENSAMXG00000006108	hfm1	76	60.830	Astyanax_mexicanus
ENSLACG00000010698	HFM1	100	66.761	ENSBTAG00000020856	HFM1	66	71.014	Bos_taurus
ENSLACG00000010698	HFM1	99	67.077	ENSCJAG00000001843	HFM1	67	70.868	Callithrix_jacchus
ENSLACG00000010698	HFM1	100	65.794	ENSCAFG00000020187	HFM1	72	65.648	Canis_familiaris
ENSLACG00000010698	HFM1	100	66.008	ENSTSYG00000014250	HFM1	71	65.819	Carlito_syrichta
ENSLACG00000010698	HFM1	100	66.321	ENSCPOG00000007421	HFM1	72	66.226	Cavia_porcellus
ENSLACG00000010698	HFM1	99	66.698	ENSCCAG00000033206	HFM1	70	66.604	Cebus_capucinus
ENSLACG00000010698	HFM1	99	66.161	ENSCATG00000030987	HFM1	66	70.145	Cercocebus_atys
ENSLACG00000010698	HFM1	100	66.170	ENSCLAG00000005173	HFM1	71	66.076	Chinchilla_lanigera
ENSLACG00000010698	HFM1	66	52.552	ENSCSAVG00000005094	-	100	52.552	Ciona_savignyi
ENSLACG00000010698	HFM1	98	61.340	ENSCGRG00001016995	Hfm1	66	64.458	Cricetulus_griseus_chok1gshd
ENSLACG00000010698	HFM1	100	63.739	ENSCGRG00000017181	Hfm1	67	66.942	Cricetulus_griseus_crigri
ENSLACG00000010698	HFM1	100	59.256	ENSCSEG00000017659	hfm1	90	63.387	Cynoglossus_semilaevis
ENSLACG00000010698	HFM1	68	69.220	ENSCVAG00000005075	hfm1	86	69.359	Cyprinodon_variegatus
ENSLACG00000010698	HFM1	80	69.529	ENSDARG00000104288	hfm1	76	69.294	Danio_rerio
ENSLACG00000010698	HFM1	99	64.345	ENSDNOG00000004776	HFM1	63	69.279	Dasypus_novemcinctus
ENSLACG00000010698	HFM1	99	64.564	ENSDORG00000014661	Hfm1	68	67.195	Dipodomys_ordii
ENSLACG00000010698	HFM1	99	65.072	ENSEASG00005015424	HFM1	96	64.976	Equus_asinus_asinus
ENSLACG00000010698	HFM1	100	67.038	ENSECAG00000024039	HFM1	72	66.945	Equus_caballus
ENSLACG00000010698	HFM1	85	69.307	ENSELUG00000018944	hfm1	97	69.197	Esox_lucius
ENSLACG00000010698	HFM1	100	67.291	ENSFCAG00000029116	HFM1	71	67.198	Felis_catus
ENSLACG00000010698	HFM1	91	70.436	ENSFALG00000001781	HFM1	66	70.539	Ficedula_albicollis
ENSLACG00000010698	HFM1	99	65.953	ENSFDAG00000020816	HFM1	64	70.041	Fukomys_damarensis
ENSLACG00000010698	HFM1	91	61.841	ENSGMOG00000017436	hfm1	99	61.841	Gadus_morhua
ENSLACG00000010698	HFM1	100	60.432	ENSGAFG00000018093	hfm1	91	67.439	Gambusia_affinis
ENSLACG00000010698	HFM1	91	62.474	ENSGACG00000015686	hfm1	99	62.577	Gasterosteus_aculeatus
ENSLACG00000010698	HFM1	99	66.919	ENSGGOG00000038524	HFM1	66	70.764	Gorilla_gorilla
ENSLACG00000010698	HFM1	89	66.455	ENSHBUG00000007309	hfm1	86	66.667	Haplochromis_burtoni
ENSLACG00000010698	HFM1	77	66.139	ENSHCOG00000019632	hfm1	97	66.017	Hippocampus_comes
ENSLACG00000010698	HFM1	89	66.176	ENSIPUG00000017020	hfm1	91	68.690	Ictalurus_punctatus
ENSLACG00000010698	HFM1	91	69.390	ENSJJAG00000017198	Hfm1	68	69.286	Jaculus_jaculus
ENSLACG00000010698	HFM1	85	64.654	ENSKMAG00000002282	hfm1	90	64.764	Kryptolebias_marmoratus
ENSLACG00000010698	HFM1	100	59.492	ENSLBEG00000006759	hfm1	95	67.947	Labrus_bergylta
ENSLACG00000010698	HFM1	99	66.635	ENSLOCG00000004931	hfm1	94	66.635	Lepisosteus_oculatus
ENSLACG00000010698	HFM1	64	75.888	ENSLAFG00000015903	-	90	75.740	Loxodonta_africana
ENSLACG00000010698	HFM1	99	62.830	ENSMFAG00000003649	HFM1	66	66.495	Macaca_fascicularis
ENSLACG00000010698	HFM1	99	65.877	ENSMMUG00000006819	HFM1	66	69.835	Macaca_mulatta
ENSLACG00000010698	HFM1	78	67.707	ENSMAMG00000004623	hfm1	97	67.587	Mastacembelus_armatus
ENSLACG00000010698	HFM1	89	65.259	ENSMZEG00005004679	hfm1	95	67.509	Maylandia_zebra
ENSLACG00000010698	HFM1	74	71.827	ENSMGAG00000008437	HFM1	97	71.555	Meleagris_gallopavo
ENSLACG00000010698	HFM1	100	64.279	ENSMAUG00000018858	Hfm1	66	67.528	Mesocricetus_auratus
ENSLACG00000010698	HFM1	100	65.915	ENSMICG00000037935	HFM1	66	69.969	Microcebus_murinus
ENSLACG00000010698	HFM1	100	63.594	ENSMOCG00000014812	Hfm1	67	67.425	Microtus_ochrogaster
ENSLACG00000010698	HFM1	86	64.874	ENSMMOG00000006148	hfm1	95	64.984	Mola_mola
ENSLACG00000010698	HFM1	89	65.751	ENSMALG00000002401	hfm1	94	69.028	Monopterus_albus
ENSLACG00000010698	HFM1	92	83.761	MGP_CAROLIEiJ_G0027496	Hfm1	63	83.761	Mus_caroli
ENSLACG00000010698	HFM1	100	64.057	ENSMUSG00000043410	Hfm1	71	63.868	Mus_musculus
ENSLACG00000010698	HFM1	100	63.782	MGP_PahariEiJ_G0017268	Hfm1	68	66.431	Mus_pahari
ENSLACG00000010698	HFM1	100	63.594	MGP_SPRETEiJ_G0028495	Hfm1	69	65.800	Mus_spretus
ENSLACG00000010698	HFM1	100	65.831	ENSMPUG00000004594	HFM1	72	65.738	Mustela_putorius_furo
ENSLACG00000010698	HFM1	100	67.705	ENSMLUG00000010200	HFM1	66	71.458	Myotis_lucifugus
ENSLACG00000010698	HFM1	89	61.996	ENSNBRG00000002910	hfm1	97	67.389	Neolamprologus_brichardi
ENSLACG00000010698	HFM1	99	63.103	ENSNLEG00000010285	HFM1	66	66.598	Nomascus_leucogenys
ENSLACG00000010698	HFM1	92	63.545	ENSMEUG00000015788	HFM1	55	74.490	Notamacropus_eugenii
ENSLACG00000010698	HFM1	81	65.541	ENSOPRG00000013916	HFM1	60	65.425	Ochotona_princeps
ENSLACG00000010698	HFM1	91	65.881	ENSONIG00000010590	hfm1	92	66.086	Oreochromis_niloticus
ENSLACG00000010698	HFM1	77	66.545	ENSORLG00000026844	hfm1	99	66.422	Oryzias_latipes
ENSLACG00000010698	HFM1	91	56.615	ENSORLG00020002951	hfm1	75	56.718	Oryzias_latipes_hni
ENSLACG00000010698	HFM1	99	60.482	ENSOMEG00000016474	hfm1	66	64.767	Oryzias_melastigma
ENSLACG00000010698	HFM1	91	70.175	ENSOGAG00000032369	HFM1	78	70.072	Otolemur_garnettii
ENSLACG00000010698	HFM1	100	66.887	ENSOARG00000015812	HFM1	66	70.911	Ovis_aries
ENSLACG00000010698	HFM1	99	67.204	ENSPPAG00000024582	HFM1	72	71.074	Pan_paniscus
ENSLACG00000010698	HFM1	100	67.105	ENSPPRG00000003270	HFM1	68	69.688	Panthera_pardus
ENSLACG00000010698	HFM1	100	67.105	ENSPTIG00000018881	HFM1	68	69.688	Panthera_tigris_altaica
ENSLACG00000010698	HFM1	99	67.109	ENSPTRG00000000948	HFM1	66	70.971	Pan_troglodytes
ENSLACG00000010698	HFM1	99	65.782	ENSPANG00000009838	HFM1	66	69.731	Papio_anubis
ENSLACG00000010698	HFM1	85	68.521	ENSPKIG00000003810	hfm1	94	68.864	Paramormyrops_kingsleyae
ENSLACG00000010698	HFM1	79	67.308	ENSPMGG00000011059	hfm1	99	67.188	Periophthalmus_magnuspinnatus
ENSLACG00000010698	HFM1	100	64.245	ENSPEMG00000022852	Hfm1	66	67.562	Peromyscus_maniculatus_bairdii
ENSLACG00000010698	HFM1	99	66.574	ENSPCIG00000014233	HFM1	72	66.481	Phascolarctos_cinereus
ENSLACG00000010698	HFM1	100	60.463	ENSPFOG00000017194	hfm1	92	64.337	Poecilia_formosa
ENSLACG00000010698	HFM1	100	60.734	ENSPLAG00000000571	hfm1	84	65.287	Poecilia_latipinna
ENSLACG00000010698	HFM1	100	60.882	ENSPMEG00000019475	hfm1	85	65.116	Poecilia_mexicana
ENSLACG00000010698	HFM1	100	60.865	ENSPREG00000007803	hfm1	91	66.789	Poecilia_reticulata
ENSLACG00000010698	HFM1	99	66.825	ENSPPYG00000001163	HFM1	66	70.661	Pongo_abelii
ENSLACG00000010698	HFM1	91	65.285	ENSPVAG00000009713	HFM1	67	65.181	Pteropus_vampyrus
ENSLACG00000010698	HFM1	89	65.287	ENSPNYG00000001795	hfm1	95	67.750	Pundamilia_nyererei
ENSLACG00000010698	HFM1	80	67.761	ENSPNAG00000010865	hfm1	84	67.761	Pygocentrus_nattereri
ENSLACG00000010698	HFM1	100	63.738	ENSRNOG00000023299	Hfm1	71	63.551	Rattus_norvegicus
ENSLACG00000010698	HFM1	99	66.066	ENSRROG00000045569	HFM1	66	70.041	Rhinopithecus_roxellana
ENSLACG00000010698	HFM1	91	70.764	ENSSBOG00000027456	HFM1	68	70.764	Saimiri_boliviensis_boliviensis
ENSLACG00000010698	HFM1	56	76.421	ENSSHAG00000014616	-	67	76.254	Sarcophilus_harrisii
ENSLACG00000010698	HFM1	91	67.683	ENSSFOG00015020129	hfm1	65	67.683	Scleropages_formosus
ENSLACG00000010698	HFM1	85	67.699	ENSSMAG00000006907	hfm1	86	67.699	Scophthalmus_maximus
ENSLACG00000010698	HFM1	79	68.510	ENSSDUG00000011424	hfm1	93	68.389	Seriola_dumerili
ENSLACG00000010698	HFM1	79	68.427	ENSSLDG00000016386	hfm1	92	68.547	Seriola_lalandi_dorsalis
ENSLACG00000010698	HFM1	87	62.095	ENSSPAG00000001023	hfm1	93	68.510	Stegastes_partitus
ENSLACG00000010698	HFM1	100	66.728	ENSSSCG00000006912	HFM1	78	66.636	Sus_scrofa
ENSLACG00000010698	HFM1	91	70.443	ENSTGUG00000006172	HFM1	99	70.340	Taeniopygia_guttata
ENSLACG00000010698	HFM1	100	66.415	ENSTTRG00000013933	HFM1	67	70.145	Tursiops_truncatus
ENSLACG00000010698	HFM1	100	65.193	ENSVPAG00000011331	HFM1	71	65.099	Vicugna_pacos
ENSLACG00000010698	HFM1	99	64.122	ENSVVUG00000020760	HFM1	99	64.027	Vulpes_vulpes
ENSLACG00000010698	HFM1	77	67.643	ENSXMAG00000004178	hfm1	90	67.354	Xiphophorus_maculatus