EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000010762 (Gene tree)
Gene ID: 102358261
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 95570 bases
Position: chrJH127950.1:530972-626541
Accession: 102358261
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000012226	RRM_1	PF00076.22	4.8e-31	1	2
ENSLACP00000012226	RRM_1	PF00076.22	4.8e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000012318	PSPC1-201	2725	XM_006006682	ENSLACP00000012226	525 (aa)	XP_006006744	H3ARF5

Gene Model

Click here to download ENSLACG00000010762's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000010762's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000010762	PSPC1	88	58.030	ENSLACG00000014728	SFPQ	69	59.649
ENSLACG00000010762	PSPC1	63	69.277	ENSLACG00000000598	NONO	80	70.030

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000010762	PSPC1	88	85.129	ENSG00000121390	PSPC1	99	75.926	Homo_sapiens
ENSLACG00000010762	PSPC1	100	63.091	ENSAPOG00000015946	pspc1	100	61.679	Acanthochromis_polyacanthus
ENSLACG00000010762	PSPC1	99	77.154	ENSAMEG00000017420	PSPC1	99	76.394	Ailuropoda_melanoleuca
ENSLACG00000010762	PSPC1	100	56.007	ENSACIG00000018695	pspc1	100	52.126	Amphilophus_citrinellus
ENSLACG00000010762	PSPC1	100	62.000	ENSAOCG00000005279	pspc1	91	64.128	Amphiprion_ocellaris
ENSLACG00000010762	PSPC1	100	62.340	ENSAPEG00000015927	pspc1	91	64.128	Amphiprion_percula
ENSLACG00000010762	PSPC1	90	58.282	ENSATEG00000004878	pspc1	100	51.193	Anabas_testudineus
ENSLACG00000010762	PSPC1	88	60.944	ENSAPLG00000003643	SFPQ	76	63.747	Anas_platyrhynchos
ENSLACG00000010762	PSPC1	77	86.881	ENSAPLG00000006246	PSPC1	100	86.881	Anas_platyrhynchos
ENSLACG00000010762	PSPC1	88	56.652	ENSACAG00000013307	-	61	61.823	Anolis_carolinensis
ENSLACG00000010762	PSPC1	99	79.356	ENSACAG00000002093	PSPC1	99	78.918	Anolis_carolinensis
ENSLACG00000010762	PSPC1	99	77.589	ENSANAG00000000059	PSPC1	99	78.286	Aotus_nancymaae
ENSLACG00000010762	PSPC1	100	56.262	ENSACLG00000027220	pspc1	100	52.778	Astatotilapia_calliptera
ENSLACG00000010762	PSPC1	100	67.035	ENSAMXG00000036881	pspc1	100	65.930	Astyanax_mexicanus
ENSLACG00000010762	PSPC1	99	78.030	ENSBTAG00000003934	PSPC1	99	77.256	Bos_taurus
ENSLACG00000010762	PSPC1	99	77.401	ENSCJAG00000004554	PSPC1	99	78.095	Callithrix_jacchus
ENSLACG00000010762	PSPC1	88	85.129	ENSCAFG00020002009	PSPC1	99	76.394	Canis_lupus_dingo
ENSLACG00000010762	PSPC1	99	78.030	ENSCHIG00000016708	PSPC1	99	77.256	Capra_hircus
ENSLACG00000010762	PSPC1	79	74.048	ENSTSYG00000032882	PSPC1	93	71.158	Carlito_syrichta
ENSLACG00000010762	PSPC1	99	78.030	ENSCPOG00000000395	PSPC1	99	78.286	Cavia_porcellus
ENSLACG00000010762	PSPC1	99	77.213	ENSCCAG00000033498	PSPC1	99	77.905	Cebus_capucinus
ENSLACG00000010762	PSPC1	88	84.914	ENSCATG00000036434	PSPC1	88	87.227	Cercocebus_atys
ENSLACG00000010762	PSPC1	78	84.223	ENSCLAG00000005241	PSPC1	89	86.000	Chinchilla_lanigera
ENSLACG00000010762	PSPC1	99	73.512	ENSCHOG00000008913	PSPC1	99	73.905	Choloepus_hoffmanni
ENSLACG00000010762	PSPC1	99	79.924	ENSCPBG00000020859	PSPC1	99	79.771	Chrysemys_picta_bellii
ENSLACG00000010762	PSPC1	59	58.842	ENSCSAVG00000003533	-	53	61.071	Ciona_savignyi
ENSLACG00000010762	PSPC1	77	72.660	ENSCANG00000018948	PSPC1	87	87.452	Colobus_angolensis_palliatus
ENSLACG00000010762	PSPC1	99	77.444	ENSCGRG00001018368	Pspc1	99	77.052	Cricetulus_griseus_chok1gshd
ENSLACG00000010762	PSPC1	99	77.444	ENSCGRG00000011724	Pspc1	99	77.052	Cricetulus_griseus_crigri
ENSLACG00000010762	PSPC1	87	64.655	ENSCVAG00000007679	-	78	66.667	Cyprinodon_variegatus
ENSLACG00000010762	PSPC1	100	65.299	ENSDARG00000006621	pspc1	100	66.988	Danio_rerio
ENSLACG00000010762	PSPC1	88	85.097	ENSDNOG00000011078	PSPC1	99	76.111	Dasypus_novemcinctus
ENSLACG00000010762	PSPC1	99	74.766	ENSDORG00000016050	Pspc1	99	73.704	Dipodomys_ordii
ENSLACG00000010762	PSPC1	55	90.099	ENSETEG00000000502	-	72	90.099	Echinops_telfairi
ENSLACG00000010762	PSPC1	55	46.326	ENSEBUG00000010133	pspc1	72	49.818	Eptatretus_burgeri
ENSLACG00000010762	PSPC1	88	58.058	ENSEBUG00000003964	-	61	73.156	Eptatretus_burgeri
ENSLACG00000010762	PSPC1	99	78.585	ENSEASG00005000119	PSPC1	99	77.239	Equus_asinus_asinus
ENSLACG00000010762	PSPC1	99	78.585	ENSECAG00000017286	PSPC1	99	77.239	Equus_caballus
ENSLACG00000010762	PSPC1	87	65.951	ENSEEUG00000011288	-	72	70.000	Erinaceus_europaeus
ENSLACG00000010762	PSPC1	100	65.930	ENSELUG00000003746	pspc1	92	69.048	Esox_lucius
ENSLACG00000010762	PSPC1	99	78.695	ENSFCAG00000027841	PSPC1	99	76.580	Felis_catus
ENSLACG00000010762	PSPC1	99	80.038	ENSFALG00000008750	PSPC1	99	79.699	Ficedula_albicollis
ENSLACG00000010762	PSPC1	99	78.585	ENSFDAG00000002617	PSPC1	99	77.799	Fukomys_damarensis
ENSLACG00000010762	PSPC1	89	64.195	ENSGMOG00000015074	pspc1	100	59.294	Gadus_morhua
ENSLACG00000010762	PSPC1	99	80.725	ENSGALG00000017142	PSPC1	99	80.608	Gallus_gallus
ENSLACG00000010762	PSPC1	62	74.540	ENSGAFG00000006327	pspc1	59	75.874	Gambusia_affinis
ENSLACG00000010762	PSPC1	88	64.086	ENSGACG00000014901	pspc1	99	57.356	Gasterosteus_aculeatus
ENSLACG00000010762	PSPC1	90	59.958	ENSGAGG00000017325	-	60	64.039	Gopherus_agassizii
ENSLACG00000010762	PSPC1	99	79.924	ENSGAGG00000019164	PSPC1	99	79.771	Gopherus_agassizii
ENSLACG00000010762	PSPC1	88	85.129	ENSGGOG00000003414	PSPC1	99	75.926	Gorilla_gorilla
ENSLACG00000010762	PSPC1	100	64.739	ENSHBUG00000001139	pspc1	100	63.822	Haplochromis_burtoni
ENSLACG00000010762	PSPC1	99	77.674	ENSHGLG00000018811	PSPC1	99	78.286	Heterocephalus_glaber_female
ENSLACG00000010762	PSPC1	66	77.233	ENSHGLG00100007962	PSPC1	98	76.657	Heterocephalus_glaber_male
ENSLACG00000010762	PSPC1	74	67.259	ENSHCOG00000013251	pspc1	84	66.324	Hippocampus_comes
ENSLACG00000010762	PSPC1	100	66.360	ENSIPUG00000013192	pspc1	100	65.818	Ictalurus_punctatus
ENSLACG00000010762	PSPC1	99	77.425	ENSSTOG00000026833	PSPC1	99	76.667	Ictidomys_tridecemlineatus
ENSLACG00000010762	PSPC1	88	84.698	ENSJJAG00000018334	Pspc1	99	76.067	Jaculus_jaculus
ENSLACG00000010762	PSPC1	88	51.277	ENSKMAG00000013525	-	100	49.534	Kryptolebias_marmoratus
ENSLACG00000010762	PSPC1	88	64.815	ENSLBEG00000004474	pspc1	74	70.905	Labrus_bergylta
ENSLACG00000010762	PSPC1	100	79.048	ENSLOCG00000010832	pspc1	99	79.048	Lepisosteus_oculatus
ENSLACG00000010762	PSPC1	99	76.822	ENSLAFG00000010968	PSPC1	99	76.067	Loxodonta_africana
ENSLACG00000010762	PSPC1	88	85.129	ENSMFAG00000032728	PSPC1	90	87.267	Macaca_fascicularis
ENSLACG00000010762	PSPC1	88	85.129	ENSMMUG00000020262	PSPC1	99	76.111	Macaca_mulatta
ENSLACG00000010762	PSPC1	88	85.129	ENSMNEG00000027401	PSPC1	99	76.111	Macaca_nemestrina
ENSLACG00000010762	PSPC1	76	85.250	ENSMLEG00000039043	PSPC1	94	85.250	Mandrillus_leucophaeus
ENSLACG00000010762	PSPC1	88	65.638	ENSMAMG00000004333	pspc1	100	54.935	Mastacembelus_armatus
ENSLACG00000010762	PSPC1	100	56.262	ENSMZEG00005005726	pspc1	100	52.778	Maylandia_zebra
ENSLACG00000010762	PSPC1	77	86.946	ENSMGAG00000015134	PSPC1	100	86.946	Meleagris_gallopavo
ENSLACG00000010762	PSPC1	88	72.611	ENSMAUG00000021067	Pspc1	99	68.201	Mesocricetus_auratus
ENSLACG00000010762	PSPC1	88	84.914	ENSMICG00000013970	PSPC1	99	76.022	Microcebus_murinus
ENSLACG00000010762	PSPC1	99	76.779	ENSMOCG00000006060	Pspc1	99	75.651	Microtus_ochrogaster
ENSLACG00000010762	PSPC1	81	84.742	ENSMODG00000008029	PSPC1	78	75.299	Monodelphis_domestica
ENSLACG00000010762	PSPC1	100	62.639	ENSMALG00000008914	pspc1	87	66.452	Monopterus_albus
ENSLACG00000010762	PSPC1	99	77.256	MGP_CAROLIEiJ_G0019341	Pspc1	99	77.684	Mus_caroli
ENSLACG00000010762	PSPC1	99	77.444	ENSMUSG00000021938	Pspc1	99	77.684	Mus_musculus
ENSLACG00000010762	PSPC1	99	77.256	MGP_PahariEiJ_G0030359	Pspc1	99	77.684	Mus_pahari
ENSLACG00000010762	PSPC1	99	77.632	MGP_SPRETEiJ_G0020232	Pspc1	99	77.895	Mus_spretus
ENSLACG00000010762	PSPC1	99	78.503	ENSMPUG00000013347	PSPC1	99	77.298	Mustela_putorius_furo
ENSLACG00000010762	PSPC1	88	84.154	ENSMLUG00000017663	PSPC1	99	76.306	Myotis_lucifugus
ENSLACG00000010762	PSPC1	99	77.068	ENSNGAG00000011271	Pspc1	99	76.067	Nannospalax_galili
ENSLACG00000010762	PSPC1	62	67.674	ENSNBRG00000014059	pspc1	79	65.868	Neolamprologus_brichardi
ENSLACG00000010762	PSPC1	88	85.129	ENSNLEG00000001294	PSPC1	88	85.590	Nomascus_leucogenys
ENSLACG00000010762	PSPC1	73	86.224	ENSMEUG00000000476	PSPC1	84	68.382	Notamacropus_eugenii
ENSLACG00000010762	PSPC1	99	67.992	ENSODEG00000007817	-	99	63.419	Octodon_degus
ENSLACG00000010762	PSPC1	88	75.906	ENSODEG00000019012	-	99	67.093	Octodon_degus
ENSLACG00000010762	PSPC1	100	65.177	ENSONIG00000012010	pspc1	99	63.060	Oreochromis_niloticus
ENSLACG00000010762	PSPC1	88	62.284	ENSOANG00000011381	-	91	59.259	Ornithorhynchus_anatinus
ENSLACG00000010762	PSPC1	76	85.500	ENSOANG00000009017	-	100	85.500	Ornithorhynchus_anatinus
ENSLACG00000010762	PSPC1	88	85.129	ENSOCUG00000006153	PSPC1	99	76.296	Oryctolagus_cuniculus
ENSLACG00000010762	PSPC1	100	62.243	ENSORLG00000004232	-	100	61.993	Oryzias_latipes
ENSLACG00000010762	PSPC1	88	67.880	ENSORLG00020000578	PSPC1	86	67.312	Oryzias_latipes_hni
ENSLACG00000010762	PSPC1	100	63.197	ENSORLG00015017480	pspc1	100	62.362	Oryzias_latipes_hsok
ENSLACG00000010762	PSPC1	88	85.345	ENSOGAG00000012643	PSPC1	99	77.444	Otolemur_garnettii
ENSLACG00000010762	PSPC1	87	85.000	ENSOARG00000014163	PSPC1	95	85.000	Ovis_aries
ENSLACG00000010762	PSPC1	88	78.448	ENSPPAG00000009836	PSPC1	90	87.227	Pan_paniscus
ENSLACG00000010762	PSPC1	99	78.695	ENSPPRG00000008833	PSPC1	99	76.580	Panthera_pardus
ENSLACG00000010762	PSPC1	76	85.500	ENSPTIG00000016917	PSPC1	84	85.500	Panthera_tigris_altaica
ENSLACG00000010762	PSPC1	81	85.714	ENSPTRG00000005677	PSPC1	99	75.746	Pan_troglodytes
ENSLACG00000010762	PSPC1	88	84.914	ENSPANG00000001992	PSPC1	88	87.267	Papio_anubis
ENSLACG00000010762	PSPC1	89	73.597	ENSPKIG00000003578	pspc1	88	73.673	Paramormyrops_kingsleyae
ENSLACG00000010762	PSPC1	99	79.732	ENSPSIG00000005168	PSPC1	99	79.087	Pelodiscus_sinensis
ENSLACG00000010762	PSPC1	55	73.702	ENSPMGG00000015135	pspc1	78	74.468	Periophthalmus_magnuspinnatus
ENSLACG00000010762	PSPC1	99	77.256	ENSPEMG00000015214	Pspc1	99	76.866	Peromyscus_maniculatus_bairdii
ENSLACG00000010762	PSPC1	50	47.015	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSLACG00000010762	PSPC1	88	84.267	ENSPCIG00000017680	PSPC1	100	75.556	Phascolarctos_cinereus
ENSLACG00000010762	PSPC1	88	66.667	ENSPFOG00000003362	pspc1	87	66.098	Poecilia_formosa
ENSLACG00000010762	PSPC1	100	61.852	ENSPLAG00000011540	pspc1	100	60.773	Poecilia_latipinna
ENSLACG00000010762	PSPC1	100	61.667	ENSPMEG00000008322	pspc1	100	60.589	Poecilia_mexicana
ENSLACG00000010762	PSPC1	100	60.741	ENSPREG00000007786	pspc1	79	67.517	Poecilia_reticulata
ENSLACG00000010762	PSPC1	88	84.914	ENSPPYG00000005186	PSPC1	99	76.022	Pongo_abelii
ENSLACG00000010762	PSPC1	66	85.976	ENSPCAG00000008314	-	65	85.976	Procavia_capensis
ENSLACG00000010762	PSPC1	88	80.603	ENSPCOG00000014364	PSPC1	99	72.222	Propithecus_coquereli
ENSLACG00000010762	PSPC1	88	83.801	ENSPVAG00000005036	PSPC1	99	75.560	Pteropus_vampyrus
ENSLACG00000010762	PSPC1	100	56.343	ENSPNYG00000008893	pspc1	100	53.493	Pundamilia_nyererei
ENSLACG00000010762	PSPC1	100	67.910	ENSPNAG00000016511	pspc1	100	67.399	Pygocentrus_nattereri
ENSLACG00000010762	PSPC1	99	77.444	ENSRNOG00000020782	Pspc1	99	77.684	Rattus_norvegicus
ENSLACG00000010762	PSPC1	88	85.129	ENSRBIG00000036057	PSPC1	94	85.590	Rhinopithecus_bieti
ENSLACG00000010762	PSPC1	88	85.129	ENSRROG00000036334	PSPC1	99	77.256	Rhinopithecus_roxellana
ENSLACG00000010762	PSPC1	79	75.362	ENSSBOG00000028172	PSPC1	88	85.874	Saimiri_boliviensis_boliviensis
ENSLACG00000010762	PSPC1	88	78.755	ENSSHAG00000004696	PSPC1	99	70.849	Sarcophilus_harrisii
ENSLACG00000010762	PSPC1	88	74.633	ENSSFOG00015001395	pspc1	89	77.700	Scleropages_formosus
ENSLACG00000010762	PSPC1	100	60.727	ENSSMAG00000001761	pspc1	100	58.759	Scophthalmus_maximus
ENSLACG00000010762	PSPC1	88	67.206	ENSSDUG00000010651	pspc1	88	66.600	Seriola_dumerili
ENSLACG00000010762	PSPC1	88	61.853	ENSSLDG00000004284	pspc1	100	53.631	Seriola_lalandi_dorsalis
ENSLACG00000010762	PSPC1	88	79.095	ENSSARG00000000888	PSPC1	99	66.364	Sorex_araneus
ENSLACG00000010762	PSPC1	88	55.437	ENSSPUG00000001136	-	58	57.882	Sphenodon_punctatus
ENSLACG00000010762	PSPC1	99	69.829	ENSSPUG00000008550	PSPC1	99	67.664	Sphenodon_punctatus
ENSLACG00000010762	PSPC1	88	67.485	ENSSPAG00000001921	pspc1	90	64.729	Stegastes_partitus
ENSLACG00000010762	PSPC1	88	85.313	ENSSSCG00000009569	PSPC1	99	77.632	Sus_scrofa
ENSLACG00000010762	PSPC1	88	86.853	ENSTGUG00000011295	PSPC1	98	87.336	Taeniopygia_guttata
ENSLACG00000010762	PSPC1	88	63.347	ENSTRUG00000011335	pspc1	80	63.953	Takifugu_rubripes
ENSLACG00000010762	PSPC1	88	64.882	ENSTNIG00000010358	pspc1	85	65.558	Tetraodon_nigroviridis
ENSLACG00000010762	PSPC1	88	68.330	ENSTBEG00000002361	PSPC1	88	66.812	Tupaia_belangeri
ENSLACG00000010762	PSPC1	99	78.409	ENSTTRG00000003343	PSPC1	99	77.820	Tursiops_truncatus
ENSLACG00000010762	PSPC1	66	75.623	ENSUAMG00000012309	PSPC1	99	75.069	Ursus_americanus
ENSLACG00000010762	PSPC1	88	84.914	ENSUMAG00000013993	PSPC1	94	85.371	Ursus_maritimus
ENSLACG00000010762	PSPC1	76	85.500	ENSVPAG00000010029	PSPC1	100	85.500	Vicugna_pacos
ENSLACG00000010762	PSPC1	88	85.129	ENSVVUG00000006414	PSPC1	99	76.394	Vulpes_vulpes
ENSLACG00000010762	PSPC1	74	65.823	ENSXCOG00000017438	pspc1	68	75.524	Xiphophorus_couchianus
ENSLACG00000010762	PSPC1	74	66.076	ENSXMAG00000007929	pspc1	68	75.874	Xiphophorus_maculatus