EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000010881 (Gene tree)
Gene ID: 102363375
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 116027 bases
Position: chrJH126624.1:541912-657938
Accession: 102363375
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000012358	ResIII	PF04851.15	2.6e-07	1	1
ENSLACP00000022920	BRK	PF07533.16	2.7e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000024884	CHD6-201	3446	-	ENSLACP00000022920	793 (aa)	-	M3XJL4
ENSLACT00000012451	CHD6-202	8304	XM_005990400	ENSLACP00000012358	2724 (aa)	-	H3ART7

Gene Model

Click here to download ENSLACG00000010881's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000010881's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000010881	CHD6	75	59.475	ENSLACG00000005557	CHD9	67	63.919
ENSLACG00000010881	CHD6	57	64.770	ENSLACG00000011367	CHD8	62	64.900
ENSLACG00000010881	CHD6	74	68.289	ENSLACG00000002461	CHD7	72	66.755

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000010881	CHD6	86	77.121	ENSG00000124177	CHD6	99	86.434	Homo_sapiens
ENSLACG00000010881	CHD6	73	74.807	ENSAPOG00000013736	chd6	60	77.011	Acanthochromis_polyacanthus
ENSLACG00000010881	CHD6	90	76.248	ENSAMEG00000009496	CHD6	88	76.190	Ailuropoda_melanoleuca
ENSLACG00000010881	CHD6	74	76.474	ENSATEG00000005608	chd6	59	78.252	Anabas_testudineus
ENSLACG00000010881	CHD6	85	76.556	ENSAPLG00000015592	CHD6	86	77.062	Anas_platyrhynchos
ENSLACG00000010881	CHD6	87	72.023	ENSACAG00000006842	CHD6	88	72.953	Anolis_carolinensis
ENSLACG00000010881	CHD6	84	77.238	ENSANAG00000037548	CHD6	99	84.404	Aotus_nancymaae
ENSLACG00000010881	CHD6	79	72.727	ENSAMXG00000009576	chd6	76	72.236	Astyanax_mexicanus
ENSLACG00000010881	CHD6	92	73.658	ENSBTAG00000005733	CHD6	90	73.833	Bos_taurus
ENSLACG00000010881	CHD6	86	77.121	ENSCJAG00000017920	CHD6	99	84.404	Callithrix_jacchus
ENSLACG00000010881	CHD6	89	74.652	ENSCAFG00000009236	CHD6	90	74.596	Canis_familiaris
ENSLACG00000010881	CHD6	89	74.565	ENSCAFG00020012906	CHD6	95	87.066	Canis_lupus_dingo
ENSLACG00000010881	CHD6	89	73.889	ENSCHIG00000017606	CHD6	90	73.833	Capra_hircus
ENSLACG00000010881	CHD6	71	77.370	ENSTSYG00000014635	CHD6	86	77.070	Carlito_syrichta
ENSLACG00000010881	CHD6	84	76.981	ENSCPOG00000015641	CHD6	85	76.999	Cavia_porcellus
ENSLACG00000010881	CHD6	84	77.238	ENSCCAG00000036828	CHD6	99	84.404	Cebus_capucinus
ENSLACG00000010881	CHD6	86	76.964	ENSCATG00000039248	CHD6	99	84.404	Cercocebus_atys
ENSLACG00000010881	CHD6	84	77.153	ENSCLAG00000013743	CHD6	85	77.094	Chinchilla_lanigera
ENSLACG00000010881	CHD6	86	76.754	ENSCSAG00000013997	CHD6	88	76.812	Chlorocebus_sabaeus
ENSLACG00000010881	CHD6	74	73.220	ENSCHOG00000012647	CHD6	79	73.574	Choloepus_hoffmanni
ENSLACG00000010881	CHD6	88	78.069	ENSCPBG00000019382	CHD6	88	78.101	Chrysemys_picta_bellii
ENSLACG00000010881	CHD6	86	76.422	ENSCANG00000043435	CHD6	99	84.404	Colobus_angolensis_palliatus
ENSLACG00000010881	CHD6	86	76.729	ENSCGRG00001002694	Chd6	91	72.856	Cricetulus_griseus_chok1gshd
ENSLACG00000010881	CHD6	87	68.587	ENSDARG00000017244	chd6	79	73.488	Danio_rerio
ENSLACG00000010881	CHD6	81	78.450	ENSDNOG00000004176	CHD6	82	78.593	Dasypus_novemcinctus
ENSLACG00000010881	CHD6	84	75.986	ENSEASG00005023433	CHD6	95	88.417	Equus_asinus_asinus
ENSLACG00000010881	CHD6	85	76.295	ENSECAG00000011761	CHD6	86	76.032	Equus_caballus
ENSLACG00000010881	CHD6	72	79.520	ENSELUG00000012309	chd6	92	79.520	Esox_lucius
ENSLACG00000010881	CHD6	86	76.410	ENSFCAG00000003572	CHD6	87	76.352	Felis_catus
ENSLACG00000010881	CHD6	89	73.243	ENSFALG00000012563	CHD6	88	72.732	Ficedula_albicollis
ENSLACG00000010881	CHD6	83	77.036	ENSFDAG00000013791	CHD6	85	77.171	Fukomys_damarensis
ENSLACG00000010881	CHD6	71	69.979	ENSGMOG00000011715	chd6	83	70.264	Gadus_morhua
ENSLACG00000010881	CHD6	76	73.001	ENSGACG00000000037	chd6	79	75.922	Gasterosteus_aculeatus
ENSLACG00000010881	CHD6	86	77.121	ENSGGOG00000013123	CHD6	99	84.404	Gorilla_gorilla
ENSLACG00000010881	CHD6	75	76.225	ENSHBUG00000014701	chd6	62	76.810	Haplochromis_burtoni
ENSLACG00000010881	CHD6	84	77.094	ENSHGLG00000004548	CHD6	84	77.036	Heterocephalus_glaber_female
ENSLACG00000010881	CHD6	84	77.094	ENSHGLG00100006401	CHD6	84	77.036	Heterocephalus_glaber_male
ENSLACG00000010881	CHD6	82	75.188	ENSIPUG00000003692	chd6	72	78.304	Ictalurus_punctatus
ENSLACG00000010881	CHD6	90	72.169	ENSSTOG00000013382	CHD6	91	72.284	Ictidomys_tridecemlineatus
ENSLACG00000010881	CHD6	73	80.943	ENSLOCG00000007386	chd6	85	75.837	Lepisosteus_oculatus
ENSLACG00000010881	CHD6	85	77.135	ENSLAFG00000012144	CHD6	89	74.179	Loxodonta_africana
ENSLACG00000010881	CHD6	84	77.315	ENSMFAG00000032830	CHD6	99	84.404	Macaca_fascicularis
ENSLACG00000010881	CHD6	84	77.315	ENSMMUG00000020458	CHD6	99	84.404	Macaca_mulatta
ENSLACG00000010881	CHD6	85	76.410	ENSMNEG00000040847	CHD6	99	84.404	Macaca_nemestrina
ENSLACG00000010881	CHD6	85	77.377	ENSMLEG00000031965	CHD6	99	84.404	Mandrillus_leucophaeus
ENSLACG00000010881	CHD6	77	72.594	ENSMAMG00000013111	chd6	61	76.642	Mastacembelus_armatus
ENSLACG00000010881	CHD6	85	74.392	ENSMGAG00000001121	CHD6	85	76.029	Meleagris_gallopavo
ENSLACG00000010881	CHD6	83	77.476	ENSMICG00000016641	CHD6	99	84.220	Microcebus_murinus
ENSLACG00000010881	CHD6	79	78.092	ENSMODG00000000720	-	90	78.092	Monodelphis_domestica
ENSLACG00000010881	CHD6	84	76.391	MGP_CAROLIEiJ_G0024604	Chd6	99	80.572	Mus_caroli
ENSLACG00000010881	CHD6	83	76.333	ENSMUSG00000057133	Chd6	99	80.488	Mus_musculus
ENSLACG00000010881	CHD6	89	72.653	MGP_PahariEiJ_G0026048	Chd6	99	80.824	Mus_pahari
ENSLACG00000010881	CHD6	83	76.333	MGP_SPRETEiJ_G0025526	Chd6	99	80.488	Mus_spretus
ENSLACG00000010881	CHD6	86	76.740	ENSMPUG00000017695	CHD6	87	76.413	Mustela_putorius_furo
ENSLACG00000010881	CHD6	85	76.251	ENSMLUG00000016247	CHD6	86	76.193	Myotis_lucifugus
ENSLACG00000010881	CHD6	83	68.834	ENSNBRG00000013839	chd6	84	68.739	Neolamprologus_brichardi
ENSLACG00000010881	CHD6	85	75.708	ENSNLEG00000006496	CHD6	85	75.767	Nomascus_leucogenys
ENSLACG00000010881	CHD6	87	73.144	ENSOPRG00000013376	-	86	73.088	Ochotona_princeps
ENSLACG00000010881	CHD6	77	75.875	ENSONIG00000000393	chd6	80	75.714	Oreochromis_niloticus
ENSLACG00000010881	CHD6	89	76.406	ENSOANG00000014347	CHD6	81	75.926	Ornithorhynchus_anatinus
ENSLACG00000010881	CHD6	86	76.910	ENSOCUG00000012394	CHD6	87	77.103	Oryctolagus_cuniculus
ENSLACG00000010881	CHD6	85	65.366	ENSORLG00020021891	chd6	95	85.371	Oryzias_latipes_hni
ENSLACG00000010881	CHD6	85	77.136	ENSOGAG00000002427	CHD6	84	76.842	Otolemur_garnettii
ENSLACG00000010881	CHD6	92	72.060	ENSOARG00000002597	CHD6	90	71.145	Ovis_aries
ENSLACG00000010881	CHD6	86	76.352	ENSPPRG00000014756	CHD6	87	76.295	Panthera_pardus
ENSLACG00000010881	CHD6	86	76.295	ENSPTIG00000011094	CHD6	87	76.237	Panthera_tigris_altaica
ENSLACG00000010881	CHD6	86	77.121	ENSPTRG00000013504	CHD6	99	84.404	Pan_troglodytes
ENSLACG00000010881	CHD6	84	77.257	ENSPANG00000025554	CHD6	99	84.220	Papio_anubis
ENSLACG00000010881	CHD6	75	77.688	ENSPKIG00000005578	chd6	72	80.042	Paramormyrops_kingsleyae
ENSLACG00000010881	CHD6	77	76.836	ENSPMGG00000014877	chd6	82	76.836	Periophthalmus_magnuspinnatus
ENSLACG00000010881	CHD6	86	77.784	ENSPCIG00000028037	CHD6	86	78.072	Phascolarctos_cinereus
ENSLACG00000010881	CHD6	73	74.655	ENSPLAG00000003128	chd6	63	74.950	Poecilia_latipinna
ENSLACG00000010881	CHD6	73	74.672	ENSPREG00000022653	chd6	99	84.982	Poecilia_reticulata
ENSLACG00000010881	CHD6	87	76.221	ENSPPYG00000011016	CHD6	87	76.278	Pongo_abelii
ENSLACG00000010881	CHD6	87	75.823	ENSPCOG00000001089	CHD6	99	84.404	Propithecus_coquereli
ENSLACG00000010881	CHD6	83	70.526	ENSPNYG00000022516	chd6	84	70.433	Pundamilia_nyererei
ENSLACG00000010881	CHD6	83	69.433	ENSPNAG00000012825	chd6	81	70.117	Pygocentrus_nattereri
ENSLACG00000010881	CHD6	86	75.688	ENSRNOG00000016744	Chd6	87	75.615	Rattus_norvegicus
ENSLACG00000010881	CHD6	87	76.450	ENSSBOG00000022089	CHD6	99	84.404	Saimiri_boliviensis_boliviensis
ENSLACG00000010881	CHD6	86	77.900	ENSSHAG00000017072	CHD6	83	77.882	Sarcophilus_harrisii
ENSLACG00000010881	CHD6	78	76.600	ENSSFOG00015012920	chd6	78	75.825	Scleropages_formosus
ENSLACG00000010881	CHD6	55	92.763	ENSSARG00000002615	-	58	92.763	Sorex_araneus
ENSLACG00000010881	CHD6	88	74.060	ENSSSCG00000007360	CHD6	90	73.815	Sus_scrofa
ENSLACG00000010881	CHD6	86	76.335	ENSTGUG00000003179	CHD6	88	75.451	Taeniopygia_guttata
ENSLACG00000010881	CHD6	72	78.329	ENSTNIG00000017487	chd6	82	77.949	Tetraodon_nigroviridis
ENSLACG00000010881	CHD6	86	79.131	ENSTTRG00000013438	CHD6	85	79.060	Tursiops_truncatus
ENSLACG00000010881	CHD6	86	74.986	ENSUAMG00000024036	CHD6	95	87.066	Ursus_americanus
ENSLACG00000010881	CHD6	86	76.474	ENSUMAG00000002017	CHD6	95	87.066	Ursus_maritimus
ENSLACG00000010881	CHD6	82	73.519	ENSVPAG00000007941	CHD6	82	73.587	Vicugna_pacos
ENSLACG00000010881	CHD6	92	74.652	ENSVVUG00000029164	CHD6	90	74.596	Vulpes_vulpes
ENSLACG00000010881	CHD6	80	71.501	ENSXETG00000021445	chd6	81	70.715	Xenopus_tropicalis