EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000010938 (Gene tree)
Gene ID: 102359754
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 24383 bases
Position: chrJH126684.1:547800-572182
Accession: 102359754
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000012418	zf-CCCH	PF00642.24	8.3e-21	1	2
ENSLACP00000012418	zf-CCCH	PF00642.24	8.3e-21	2	2
ENSLACP00000012418	zf-CCHC	PF00098.23	3.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000012511	CPSF4-201	2497	XM_005992309	ENSLACP00000012418	270 (aa)	XP_005992371	H3ARZ7

Gene Model

Click here to download ENSLACG00000010938's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000010938's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000010938	CPSF4	100	61.255	ENSLACG00000018470	-	100	61.255

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000010938	CPSF4	100	89.259	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSLACG00000010938	CPSF4	67	74.317	ENSAPOG00000004921	cpsf4	100	74.317	Acanthochromis_polyacanthus
ENSLACG00000010938	CPSF4	100	88.889	ENSAMEG00000006252	CPSF4	100	88.889	Ailuropoda_melanoleuca
ENSLACG00000010938	CPSF4	100	77.778	ENSACIG00000009248	cpsf4	100	78.148	Amphilophus_citrinellus
ENSLACG00000010938	CPSF4	100	84.871	ENSAOCG00000019616	cpsf4	100	84.871	Amphiprion_ocellaris
ENSLACG00000010938	CPSF4	100	84.871	ENSAPEG00000011679	cpsf4	100	84.871	Amphiprion_percula
ENSLACG00000010938	CPSF4	100	83.395	ENSATEG00000007010	cpsf4	100	83.395	Anabas_testudineus
ENSLACG00000010938	CPSF4	100	88.148	ENSACAG00000012941	CPSF4	89	88.148	Anolis_carolinensis
ENSLACG00000010938	CPSF4	100	89.259	ENSANAG00000021360	CPSF4	100	89.259	Aotus_nancymaae
ENSLACG00000010938	CPSF4	100	83.395	ENSACLG00000010374	cpsf4	100	83.395	Astatotilapia_calliptera
ENSLACG00000010938	CPSF4	100	84.815	ENSAMXG00000031647	cpsf4	100	84.815	Astyanax_mexicanus
ENSLACG00000010938	CPSF4	100	82.963	ENSBTAG00000002090	CPSF4	100	82.963	Bos_taurus
ENSLACG00000010938	CPSF4	100	89.259	ENSCJAG00000015826	CPSF4	100	89.259	Callithrix_jacchus
ENSLACG00000010938	CPSF4	100	88.889	ENSCAFG00000015036	CPSF4	100	88.889	Canis_familiaris
ENSLACG00000010938	CPSF4	100	82.963	ENSCAFG00020014462	CPSF4	100	82.963	Canis_lupus_dingo
ENSLACG00000010938	CPSF4	100	89.259	ENSCHIG00000014313	CPSF4	100	89.259	Capra_hircus
ENSLACG00000010938	CPSF4	100	75.646	ENSTSYG00000014604	-	100	75.646	Carlito_syrichta
ENSLACG00000010938	CPSF4	100	83.704	ENSTSYG00000005712	-	100	83.704	Carlito_syrichta
ENSLACG00000010938	CPSF4	89	76.033	ENSTSYG00000008195	-	99	76.096	Carlito_syrichta
ENSLACG00000010938	CPSF4	82	87.330	ENSCAPG00000013881	CPSF4	88	86.547	Cavia_aperea
ENSLACG00000010938	CPSF4	100	82.963	ENSCPOG00000001783	CPSF4	100	82.963	Cavia_porcellus
ENSLACG00000010938	CPSF4	100	89.259	ENSCCAG00000028291	CPSF4	100	89.259	Cebus_capucinus
ENSLACG00000010938	CPSF4	100	89.259	ENSCATG00000038440	CPSF4	100	89.259	Cercocebus_atys
ENSLACG00000010938	CPSF4	100	89.259	ENSCLAG00000007050	CPSF4	100	89.259	Chinchilla_lanigera
ENSLACG00000010938	CPSF4	100	89.259	ENSCSAG00000017795	CPSF4	100	89.259	Chlorocebus_sabaeus
ENSLACG00000010938	CPSF4	80	87.558	ENSCPBG00000020869	CPSF4	100	87.558	Chrysemys_picta_bellii
ENSLACG00000010938	CPSF4	61	82.424	ENSCPBG00000010269	-	99	82.424	Chrysemys_picta_bellii
ENSLACG00000010938	CPSF4	97	55.682	ENSCING00000021080	-	97	55.682	Ciona_intestinalis
ENSLACG00000010938	CPSF4	96	53.333	ENSCSAVG00000011469	-	97	53.333	Ciona_savignyi
ENSLACG00000010938	CPSF4	100	89.259	ENSCANG00000019384	CPSF4	100	89.259	Colobus_angolensis_palliatus
ENSLACG00000010938	CPSF4	100	82.963	ENSCGRG00001024184	Cpsf4	100	82.963	Cricetulus_griseus_chok1gshd
ENSLACG00000010938	CPSF4	100	88.889	ENSCGRG00000013892	Cpsf4	100	88.889	Cricetulus_griseus_crigri
ENSLACG00000010938	CPSF4	100	83.395	ENSCSEG00000019055	cpsf4	100	83.395	Cynoglossus_semilaevis
ENSLACG00000010938	CPSF4	100	84.133	ENSCVAG00000016528	cpsf4	100	84.133	Cyprinodon_variegatus
ENSLACG00000010938	CPSF4	100	83.764	ENSDARG00000020217	cpsf4	100	83.764	Danio_rerio
ENSLACG00000010938	CPSF4	100	89.259	ENSDNOG00000006344	CPSF4	100	89.259	Dasypus_novemcinctus
ENSLACG00000010938	CPSF4	81	88.073	ENSDORG00000000742	Cpsf4	100	88.073	Dipodomys_ordii
ENSLACG00000010938	CPSF4	100	53.425	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSLACG00000010938	CPSF4	69	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSLACG00000010938	CPSF4	99	65.299	ENSEBUG00000012552	cpsf4	98	65.299	Eptatretus_burgeri
ENSLACG00000010938	CPSF4	100	82.963	ENSEASG00005002487	CPSF4	100	82.963	Equus_asinus_asinus
ENSLACG00000010938	CPSF4	100	88.889	ENSECAG00000007525	CPSF4	100	88.889	Equus_caballus
ENSLACG00000010938	CPSF4	63	98.507	ENSEEUG00000002158	CPSF4	73	98.507	Erinaceus_europaeus
ENSLACG00000010938	CPSF4	100	82.482	ENSELUG00000011481	cpsf4	100	82.482	Esox_lucius
ENSLACG00000010938	CPSF4	100	88.889	ENSFCAG00000015070	CPSF4	100	88.889	Felis_catus
ENSLACG00000010938	CPSF4	100	82.963	ENSFALG00000013799	CPSF4	100	82.963	Ficedula_albicollis
ENSLACG00000010938	CPSF4	61	58.721	ENSFALG00000012906	-	100	58.721	Ficedula_albicollis
ENSLACG00000010938	CPSF4	90	88.115	ENSFDAG00000014092	CPSF4	100	88.115	Fukomys_damarensis
ENSLACG00000010938	CPSF4	100	82.657	ENSFHEG00000010880	cpsf4	100	82.657	Fundulus_heteroclitus
ENSLACG00000010938	CPSF4	100	77.574	ENSGMOG00000002330	cpsf4	100	77.574	Gadus_morhua
ENSLACG00000010938	CPSF4	100	82.963	ENSGALG00000004714	CPSF4	100	82.963	Gallus_gallus
ENSLACG00000010938	CPSF4	99	38.298	ENSGALG00000004441	-	92	38.298	Gallus_gallus
ENSLACG00000010938	CPSF4	100	83.395	ENSGAFG00000010580	cpsf4	100	83.395	Gambusia_affinis
ENSLACG00000010938	CPSF4	100	75.735	ENSGACG00000007792	cpsf4	100	75.735	Gasterosteus_aculeatus
ENSLACG00000010938	CPSF4	100	88.519	ENSGAGG00000021835	CPSF4	100	88.519	Gopherus_agassizii
ENSLACG00000010938	CPSF4	67	78.022	ENSGAGG00000020579	-	100	78.022	Gopherus_agassizii
ENSLACG00000010938	CPSF4	100	89.259	ENSGGOG00000015131	CPSF4	100	89.259	Gorilla_gorilla
ENSLACG00000010938	CPSF4	100	83.395	ENSHBUG00000013699	cpsf4	100	83.395	Haplochromis_burtoni
ENSLACG00000010938	CPSF4	100	87.500	ENSHGLG00000017150	CPSF4	100	87.500	Heterocephalus_glaber_female
ENSLACG00000010938	CPSF4	66	67.232	ENSHGLG00100017302	-	89	66.842	Heterocephalus_glaber_male
ENSLACG00000010938	CPSF4	87	85.232	ENSHGLG00100009215	-	100	85.232	Heterocephalus_glaber_male
ENSLACG00000010938	CPSF4	100	78.967	ENSHCOG00000004397	cpsf4	100	78.967	Hippocampus_comes
ENSLACG00000010938	CPSF4	100	82.657	ENSIPUG00000017147	cpsf4	100	82.657	Ictalurus_punctatus
ENSLACG00000010938	CPSF4	100	88.889	ENSSTOG00000001688	CPSF4	100	88.889	Ictidomys_tridecemlineatus
ENSLACG00000010938	CPSF4	100	89.259	ENSJJAG00000019426	Cpsf4	100	89.259	Jaculus_jaculus
ENSLACG00000010938	CPSF4	100	83.395	ENSKMAG00000015642	cpsf4	100	83.395	Kryptolebias_marmoratus
ENSLACG00000010938	CPSF4	100	87.778	ENSLOCG00000004814	cpsf4	100	87.778	Lepisosteus_oculatus
ENSLACG00000010938	CPSF4	100	88.519	ENSLAFG00000000159	CPSF4	100	88.519	Loxodonta_africana
ENSLACG00000010938	CPSF4	100	89.259	ENSMFAG00000001462	CPSF4	100	89.259	Macaca_fascicularis
ENSLACG00000010938	CPSF4	100	89.259	ENSMMUG00000019191	CPSF4	100	89.259	Macaca_mulatta
ENSLACG00000010938	CPSF4	100	89.259	ENSMNEG00000032306	CPSF4	100	89.259	Macaca_nemestrina
ENSLACG00000010938	CPSF4	100	89.259	ENSMLEG00000034721	CPSF4	100	89.259	Mandrillus_leucophaeus
ENSLACG00000010938	CPSF4	100	84.871	ENSMAMG00000006244	cpsf4	100	84.871	Mastacembelus_armatus
ENSLACG00000010938	CPSF4	100	83.395	ENSMZEG00005007515	cpsf4	100	83.395	Maylandia_zebra
ENSLACG00000010938	CPSF4	87	81.356	ENSMGAG00000004235	CPSF4	100	81.356	Meleagris_gallopavo
ENSLACG00000010938	CPSF4	100	88.889	ENSMAUG00000021253	Cpsf4	100	88.889	Mesocricetus_auratus
ENSLACG00000010938	CPSF4	100	88.889	ENSMICG00000017429	CPSF4	100	88.889	Microcebus_murinus
ENSLACG00000010938	CPSF4	100	88.889	ENSMOCG00000014901	Cpsf4	100	88.889	Microtus_ochrogaster
ENSLACG00000010938	CPSF4	100	83.395	ENSMMOG00000001813	cpsf4	100	83.395	Mola_mola
ENSLACG00000010938	CPSF4	100	89.630	ENSMODG00000001367	CPSF4	100	89.630	Monodelphis_domestica
ENSLACG00000010938	CPSF4	100	83.764	ENSMALG00000012611	cpsf4	100	83.764	Monopterus_albus
ENSLACG00000010938	CPSF4	100	88.889	MGP_CAROLIEiJ_G0028012	Cpsf4	100	88.889	Mus_caroli
ENSLACG00000010938	CPSF4	100	88.889	ENSMUSG00000029625	Cpsf4	100	88.889	Mus_musculus
ENSLACG00000010938	CPSF4	100	88.889	MGP_PahariEiJ_G0024581	Cpsf4	100	88.889	Mus_pahari
ENSLACG00000010938	CPSF4	100	88.889	MGP_SPRETEiJ_G0029013	Cpsf4	100	88.889	Mus_spretus
ENSLACG00000010938	CPSF4	100	88.889	ENSMPUG00000016508	CPSF4	100	88.889	Mustela_putorius_furo
ENSLACG00000010938	CPSF4	87	81.356	ENSMLUG00000010980	CPSF4	100	81.356	Myotis_lucifugus
ENSLACG00000010938	CPSF4	100	88.889	ENSNGAG00000001567	Cpsf4	100	88.889	Nannospalax_galili
ENSLACG00000010938	CPSF4	91	82.591	ENSNBRG00000003943	cpsf4	98	82.591	Neolamprologus_brichardi
ENSLACG00000010938	CPSF4	100	86.667	ENSNLEG00000011074	CPSF4	100	86.667	Nomascus_leucogenys
ENSLACG00000010938	CPSF4	100	89.630	ENSMEUG00000006955	CPSF4	100	89.630	Notamacropus_eugenii
ENSLACG00000010938	CPSF4	100	88.889	ENSOPRG00000013663	CPSF4	100	88.889	Ochotona_princeps
ENSLACG00000010938	CPSF4	100	88.889	ENSODEG00000011181	-	100	88.889	Octodon_degus
ENSLACG00000010938	CPSF4	100	67.153	ENSODEG00000009779	-	100	67.153	Octodon_degus
ENSLACG00000010938	CPSF4	99	69.925	ENSODEG00000018283	-	91	69.925	Octodon_degus
ENSLACG00000010938	CPSF4	100	83.026	ENSONIG00000008495	cpsf4	100	83.026	Oreochromis_niloticus
ENSLACG00000010938	CPSF4	87	86.864	ENSOANG00000007729	CPSF4	100	86.864	Ornithorhynchus_anatinus
ENSLACG00000010938	CPSF4	100	54.225	ENSOANG00000009568	-	100	54.225	Ornithorhynchus_anatinus
ENSLACG00000010938	CPSF4	100	88.889	ENSOCUG00000002437	CPSF4	70	88.889	Oryctolagus_cuniculus
ENSLACG00000010938	CPSF4	100	83.333	ENSORLG00000022798	cpsf4	100	83.333	Oryzias_latipes
ENSLACG00000010938	CPSF4	100	83.333	ENSORLG00020008548	cpsf4	100	83.333	Oryzias_latipes_hni
ENSLACG00000010938	CPSF4	100	82.963	ENSORLG00015019575	cpsf4	100	82.963	Oryzias_latipes_hsok
ENSLACG00000010938	CPSF4	100	81.852	ENSOMEG00000005176	cpsf4	100	81.852	Oryzias_melastigma
ENSLACG00000010938	CPSF4	100	88.889	ENSOGAG00000010884	CPSF4	100	88.889	Otolemur_garnettii
ENSLACG00000010938	CPSF4	100	79.710	ENSOARG00000018668	CPSF4	100	79.710	Ovis_aries
ENSLACG00000010938	CPSF4	100	89.259	ENSPPAG00000043355	CPSF4	100	89.259	Pan_paniscus
ENSLACG00000010938	CPSF4	100	88.889	ENSPPRG00000003134	CPSF4	100	88.889	Panthera_pardus
ENSLACG00000010938	CPSF4	90	88.889	ENSPTIG00000005604	CPSF4	90	88.889	Panthera_tigris_altaica
ENSLACG00000010938	CPSF4	100	89.259	ENSPTRG00000019453	CPSF4	100	89.259	Pan_troglodytes
ENSLACG00000010938	CPSF4	100	89.259	ENSPANG00000023123	CPSF4	100	89.259	Papio_anubis
ENSLACG00000010938	CPSF4	100	83.212	ENSPKIG00000014278	cpsf4	100	83.212	Paramormyrops_kingsleyae
ENSLACG00000010938	CPSF4	80	87.097	ENSPSIG00000011229	CPSF4	100	87.097	Pelodiscus_sinensis
ENSLACG00000010938	CPSF4	81	57.658	ENSPSIG00000018198	-	100	57.658	Pelodiscus_sinensis
ENSLACG00000010938	CPSF4	100	73.801	ENSPMGG00000017735	cpsf4	100	73.801	Periophthalmus_magnuspinnatus
ENSLACG00000010938	CPSF4	100	88.889	ENSPEMG00000004508	Cpsf4	100	88.889	Peromyscus_maniculatus_bairdii
ENSLACG00000010938	CPSF4	100	89.630	ENSPCIG00000024776	CPSF4	100	89.630	Phascolarctos_cinereus
ENSLACG00000010938	CPSF4	100	83.395	ENSPFOG00000014912	cpsf4	100	83.395	Poecilia_formosa
ENSLACG00000010938	CPSF4	100	76.753	ENSPLAG00000009599	cpsf4	100	76.753	Poecilia_latipinna
ENSLACG00000010938	CPSF4	100	83.395	ENSPMEG00000009790	cpsf4	100	83.395	Poecilia_mexicana
ENSLACG00000010938	CPSF4	100	82.657	ENSPREG00000018166	cpsf4	100	82.657	Poecilia_reticulata
ENSLACG00000010938	CPSF4	87	88.511	ENSPPYG00000017378	CPSF4	100	88.511	Pongo_abelii
ENSLACG00000010938	CPSF4	100	88.519	ENSPCAG00000001892	CPSF4	100	88.519	Procavia_capensis
ENSLACG00000010938	CPSF4	100	88.889	ENSPCOG00000012771	CPSF4	100	88.889	Propithecus_coquereli
ENSLACG00000010938	CPSF4	100	82.593	ENSPVAG00000007531	CPSF4	100	82.593	Pteropus_vampyrus
ENSLACG00000010938	CPSF4	100	83.395	ENSPNYG00000018559	cpsf4	100	83.395	Pundamilia_nyererei
ENSLACG00000010938	CPSF4	100	83.764	ENSPNAG00000003736	cpsf4	100	85.240	Pygocentrus_nattereri
ENSLACG00000010938	CPSF4	100	82.593	ENSRNOG00000000985	Cpsf4	100	82.593	Rattus_norvegicus
ENSLACG00000010938	CPSF4	87	88.936	ENSRBIG00000033886	CPSF4	100	88.936	Rhinopithecus_bieti
ENSLACG00000010938	CPSF4	100	83.333	ENSRROG00000040431	CPSF4	100	83.333	Rhinopithecus_roxellana
ENSLACG00000010938	CPSF4	100	89.259	ENSSBOG00000020493	CPSF4	100	89.259	Saimiri_boliviensis_boliviensis
ENSLACG00000010938	CPSF4	100	89.630	ENSSHAG00000011533	CPSF4	100	89.630	Sarcophilus_harrisii
ENSLACG00000010938	CPSF4	100	85.145	ENSSFOG00015007883	cpsf4	100	85.870	Scleropages_formosus
ENSLACG00000010938	CPSF4	100	78.148	ENSSMAG00000006374	cpsf4	100	78.148	Scophthalmus_maximus
ENSLACG00000010938	CPSF4	100	84.502	ENSSDUG00000018887	cpsf4	100	84.502	Seriola_dumerili
ENSLACG00000010938	CPSF4	100	84.502	ENSSLDG00000019078	cpsf4	100	84.502	Seriola_lalandi_dorsalis
ENSLACG00000010938	CPSF4	87	88.511	ENSSARG00000012416	CPSF4	100	88.511	Sorex_araneus
ENSLACG00000010938	CPSF4	96	59.387	ENSSPUG00000014803	-	97	59.387	Sphenodon_punctatus
ENSLACG00000010938	CPSF4	100	88.519	ENSSPUG00000003549	CPSF4	100	88.519	Sphenodon_punctatus
ENSLACG00000010938	CPSF4	100	78.519	ENSSPAG00000006174	cpsf4	100	78.519	Stegastes_partitus
ENSLACG00000010938	CPSF4	100	82.963	ENSSSCG00000026896	CPSF4	100	82.963	Sus_scrofa
ENSLACG00000010938	CPSF4	100	81.985	ENSTGUG00000007552	CPSF4	100	81.985	Taeniopygia_guttata
ENSLACG00000010938	CPSF4	100	80.074	ENSTRUG00000024220	cpsf4	100	80.074	Takifugu_rubripes
ENSLACG00000010938	CPSF4	100	80.074	ENSTNIG00000006265	cpsf4	100	80.812	Tetraodon_nigroviridis
ENSLACG00000010938	CPSF4	87	79.149	ENSTBEG00000011406	CPSF4	100	79.149	Tupaia_belangeri
ENSLACG00000010938	CPSF4	100	74.444	ENSTTRG00000003007	CPSF4	100	74.444	Tursiops_truncatus
ENSLACG00000010938	CPSF4	92	81.048	ENSUAMG00000008051	CPSF4	85	81.048	Ursus_americanus
ENSLACG00000010938	CPSF4	100	82.593	ENSUMAG00000009474	CPSF4	100	82.593	Ursus_maritimus
ENSLACG00000010938	CPSF4	100	82.963	ENSVVUG00000008824	CPSF4	100	82.963	Vulpes_vulpes
ENSLACG00000010938	CPSF4	100	84.643	ENSXETG00000009892	cpsf4	100	84.643	Xenopus_tropicalis
ENSLACG00000010938	CPSF4	99	59.854	ENSXETG00000004641	cpsf4l	99	59.854	Xenopus_tropicalis
ENSLACG00000010938	CPSF4	100	83.026	ENSXCOG00000016040	cpsf4	100	83.026	Xiphophorus_couchianus
ENSLACG00000010938	CPSF4	100	83.395	ENSXMAG00000024670	cpsf4	100	83.395	Xiphophorus_maculatus