EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000010947 (Gene tree)
Gene ID: 102358881
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 6481 bases
Position: chrJH127166.1:549685-556165
Accession: 102358881
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000012427	LSM	PF01423.22	1.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000012520	LSM1-201	1047	XM_006000360	ENSLACP00000012427	121 (aa)	XP_006000422	H3AS06

Gene Model

Click here to download ENSLACG00000010947's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000010947's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000010947	LSM1	63	33.766	ENSLACG00000010231	LSM8	80	33.766

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000010947	LSM1	98	90.678	ENSG00000175324	LSM1	89	90.678	Homo_sapiens
ENSLACG00000010947	LSM1	98	83.193	ENSAPOG00000010833	lsm1	90	81.667	Acanthochromis_polyacanthus
ENSLACG00000010947	LSM1	98	90.678	ENSAMEG00000011141	LSM1	89	90.678	Ailuropoda_melanoleuca
ENSLACG00000010947	LSM1	51	90.323	ENSACIG00000019593	lsm1	52	90.323	Amphilophus_citrinellus
ENSLACG00000010947	LSM1	99	81.667	ENSAOCG00000017997	-	90	81.667	Amphiprion_ocellaris
ENSLACG00000010947	LSM1	99	81.667	ENSAOCG00000017096	lsm1	90	81.667	Amphiprion_ocellaris
ENSLACG00000010947	LSM1	99	81.667	ENSAPEG00000011669	lsm1	90	81.667	Amphiprion_percula
ENSLACG00000010947	LSM1	99	81.667	ENSATEG00000022266	lsm1	90	81.667	Anabas_testudineus
ENSLACG00000010947	LSM1	98	90.678	ENSANAG00000027785	LSM1	89	90.678	Aotus_nancymaae
ENSLACG00000010947	LSM1	99	81.667	ENSACLG00000011400	lsm1	90	81.667	Astatotilapia_calliptera
ENSLACG00000010947	LSM1	99	81.667	ENSAMXG00000005441	lsm1	90	81.667	Astyanax_mexicanus
ENSLACG00000010947	LSM1	98	89.831	ENSBTAG00000001612	LSM1	89	89.831	Bos_taurus
ENSLACG00000010947	LSM1	88	52.778	WBGene00003076	lsm-1	82	52.778	Caenorhabditis_elegans
ENSLACG00000010947	LSM1	98	89.831	ENSCJAG00000048015	LSM1	89	89.831	Callithrix_jacchus
ENSLACG00000010947	LSM1	98	90.678	ENSCAFG00000006113	LSM1	89	90.678	Canis_familiaris
ENSLACG00000010947	LSM1	98	90.678	ENSCAFG00020001822	LSM1	89	90.678	Canis_lupus_dingo
ENSLACG00000010947	LSM1	98	90.678	ENSCHIG00000013194	LSM1	89	90.678	Capra_hircus
ENSLACG00000010947	LSM1	98	90.678	ENSTSYG00000010394	LSM1	89	90.678	Carlito_syrichta
ENSLACG00000010947	LSM1	98	90.678	ENSCPOG00000032671	LSM1	89	90.678	Cavia_porcellus
ENSLACG00000010947	LSM1	98	90.678	ENSCCAG00000037171	LSM1	89	90.678	Cebus_capucinus
ENSLACG00000010947	LSM1	98	90.678	ENSCATG00000020377	LSM1	89	90.678	Cercocebus_atys
ENSLACG00000010947	LSM1	98	88.983	ENSCLAG00000001137	LSM1	89	88.983	Chinchilla_lanigera
ENSLACG00000010947	LSM1	98	90.678	ENSCSAG00000015485	LSM1	89	90.678	Chlorocebus_sabaeus
ENSLACG00000010947	LSM1	98	89.831	ENSCHOG00000006030	LSM1	89	89.831	Choloepus_hoffmanni
ENSLACG00000010947	LSM1	100	90.909	ENSCPBG00000006569	LSM1	82	90.909	Chrysemys_picta_bellii
ENSLACG00000010947	LSM1	97	64.957	ENSCING00000013536	-	89	63.866	Ciona_intestinalis
ENSLACG00000010947	LSM1	98	90.678	ENSCANG00000019173	LSM1	89	90.678	Colobus_angolensis_palliatus
ENSLACG00000010947	LSM1	98	89.831	ENSCGRG00001024560	-	89	89.831	Cricetulus_griseus_chok1gshd
ENSLACG00000010947	LSM1	81	75.728	ENSCGRG00001002259	-	90	75.728	Cricetulus_griseus_chok1gshd
ENSLACG00000010947	LSM1	81	75.728	ENSCGRG00000013603	-	90	75.728	Cricetulus_griseus_crigri
ENSLACG00000010947	LSM1	98	89.831	ENSCGRG00000006554	-	89	89.831	Cricetulus_griseus_crigri
ENSLACG00000010947	LSM1	99	80.833	ENSCSEG00000008319	lsm1	83	80.833	Cynoglossus_semilaevis
ENSLACG00000010947	LSM1	99	80.833	ENSCSEG00000010570	lsm1	83	80.833	Cynoglossus_semilaevis
ENSLACG00000010947	LSM1	99	80.833	ENSCVAG00000003871	lsm1	90	80.833	Cyprinodon_variegatus
ENSLACG00000010947	LSM1	98	82.203	ENSDARG00000043177	lsm1	89	82.203	Danio_rerio
ENSLACG00000010947	LSM1	98	90.678	ENSDNOG00000046387	-	89	90.678	Dasypus_novemcinctus
ENSLACG00000010947	LSM1	84	71.569	ENSDNOG00000046620	-	86	71.569	Dasypus_novemcinctus
ENSLACG00000010947	LSM1	98	83.898	ENSDNOG00000030989	-	88	83.898	Dasypus_novemcinctus
ENSLACG00000010947	LSM1	99	89.167	ENSDNOG00000032911	-	90	89.167	Dasypus_novemcinctus
ENSLACG00000010947	LSM1	98	90.678	ENSDORG00000028172	Lsm1	89	90.678	Dipodomys_ordii
ENSLACG00000010947	LSM1	90	66.055	FBgn0261067	LSm1	80	66.055	Drosophila_melanogaster
ENSLACG00000010947	LSM1	98	88.983	ENSEASG00005016677	LSM1	89	88.983	Equus_asinus_asinus
ENSLACG00000010947	LSM1	98	88.983	ENSECAG00000010461	LSM1	89	88.983	Equus_caballus
ENSLACG00000010947	LSM1	98	62.712	ENSEEUG00000015181	LSM1	85	62.712	Erinaceus_europaeus
ENSLACG00000010947	LSM1	98	79.661	ENSELUG00000023374	lsm1	89	79.661	Esox_lucius
ENSLACG00000010947	LSM1	98	83.051	ENSELUG00000002322	lsm1	89	83.051	Esox_lucius
ENSLACG00000010947	LSM1	98	90.678	ENSFCAG00000039335	LSM1	89	90.678	Felis_catus
ENSLACG00000010947	LSM1	98	92.373	ENSFALG00000006723	LSM1	100	92.373	Ficedula_albicollis
ENSLACG00000010947	LSM1	98	90.678	ENSFDAG00000007658	LSM1	89	90.678	Fukomys_damarensis
ENSLACG00000010947	LSM1	99	80.833	ENSFHEG00000009556	lsm1	90	80.833	Fundulus_heteroclitus
ENSLACG00000010947	LSM1	99	80.833	ENSGMOG00000016651	lsm1	88	80.833	Gadus_morhua
ENSLACG00000010947	LSM1	98	88.983	ENSGALG00000003245	LSM1	89	88.983	Gallus_gallus
ENSLACG00000010947	LSM1	99	80.833	ENSGAFG00000011355	lsm1	90	80.833	Gambusia_affinis
ENSLACG00000010947	LSM1	99	81.667	ENSGACG00000011763	lsm1	88	81.667	Gasterosteus_aculeatus
ENSLACG00000010947	LSM1	98	91.525	ENSGAGG00000024065	LSM1	89	91.525	Gopherus_agassizii
ENSLACG00000010947	LSM1	98	90.678	ENSGGOG00000022658	LSM1	89	90.678	Gorilla_gorilla
ENSLACG00000010947	LSM1	98	83.193	ENSHBUG00000010897	lsm1	90	81.667	Haplochromis_burtoni
ENSLACG00000010947	LSM1	98	90.678	ENSHGLG00000005711	LSM1	89	90.678	Heterocephalus_glaber_female
ENSLACG00000010947	LSM1	91	80.000	ENSHGLG00000017574	-	93	80.000	Heterocephalus_glaber_female
ENSLACG00000010947	LSM1	98	90.678	ENSHGLG00100017660	LSM1	89	90.678	Heterocephalus_glaber_male
ENSLACG00000010947	LSM1	91	80.000	ENSHGLG00100012152	-	93	80.000	Heterocephalus_glaber_male
ENSLACG00000010947	LSM1	99	80.833	ENSHCOG00000017233	lsm1	90	80.833	Hippocampus_comes
ENSLACG00000010947	LSM1	98	80.508	ENSIPUG00000002312	LSM1	89	80.508	Ictalurus_punctatus
ENSLACG00000010947	LSM1	55	92.424	ENSSTOG00000026870	LSM1	80	92.424	Ictidomys_tridecemlineatus
ENSLACG00000010947	LSM1	98	89.831	ENSJJAG00000014605	-	89	89.831	Jaculus_jaculus
ENSLACG00000010947	LSM1	99	81.667	ENSKMAG00000003016	lsm1	90	81.667	Kryptolebias_marmoratus
ENSLACG00000010947	LSM1	99	81.667	ENSLBEG00000022352	lsm1	90	81.667	Labrus_bergylta
ENSLACG00000010947	LSM1	98	89.831	ENSLOCG00000015149	lsm1	89	89.831	Lepisosteus_oculatus
ENSLACG00000010947	LSM1	98	90.678	ENSLAFG00000003534	LSM1	89	90.678	Loxodonta_africana
ENSLACG00000010947	LSM1	98	90.678	ENSMFAG00000032661	LSM1	89	90.678	Macaca_fascicularis
ENSLACG00000010947	LSM1	98	90.678	ENSMLEG00000034535	LSM1	89	90.678	Mandrillus_leucophaeus
ENSLACG00000010947	LSM1	99	81.667	ENSMAMG00000007464	lsm1	90	81.667	Mastacembelus_armatus
ENSLACG00000010947	LSM1	99	81.667	ENSMZEG00005010321	lsm1	90	81.667	Maylandia_zebra
ENSLACG00000010947	LSM1	98	88.983	ENSMGAG00000002125	LSM1	89	88.983	Meleagris_gallopavo
ENSLACG00000010947	LSM1	98	91.525	ENSMICG00000030726	LSM1	89	91.525	Microcebus_murinus
ENSLACG00000010947	LSM1	98	89.831	ENSMOCG00000022817	Lsm1	89	89.831	Microtus_ochrogaster
ENSLACG00000010947	LSM1	99	82.500	ENSMMOG00000015466	lsm1	90	82.500	Mola_mola
ENSLACG00000010947	LSM1	98	91.525	ENSMODG00000010732	-	89	91.525	Monodelphis_domestica
ENSLACG00000010947	LSM1	51	90.323	ENSMALG00000001478	lsm1	66	90.323	Monopterus_albus
ENSLACG00000010947	LSM1	98	88.136	MGP_CAROLIEiJ_G0030930	Lsm1	89	88.136	Mus_caroli
ENSLACG00000010947	LSM1	98	88.136	ENSMUSG00000037296	Lsm1	89	88.136	Mus_musculus
ENSLACG00000010947	LSM1	98	88.136	MGP_PahariEiJ_G0021400	Lsm1	89	88.136	Mus_pahari
ENSLACG00000010947	LSM1	98	88.136	MGP_SPRETEiJ_G0032049	Lsm1	89	88.136	Mus_spretus
ENSLACG00000010947	LSM1	98	91.525	ENSMPUG00000009883	LSM1	89	91.525	Mustela_putorius_furo
ENSLACG00000010947	LSM1	98	89.831	ENSMLUG00000003734	LSM1	89	89.831	Myotis_lucifugus
ENSLACG00000010947	LSM1	98	89.831	ENSNGAG00000003753	Lsm1	89	89.831	Nannospalax_galili
ENSLACG00000010947	LSM1	51	90.323	ENSNBRG00000017370	lsm1	53	90.323	Neolamprologus_brichardi
ENSLACG00000010947	LSM1	98	90.678	ENSNLEG00000029390	LSM1	89	90.678	Nomascus_leucogenys
ENSLACG00000010947	LSM1	98	91.525	ENSMEUG00000014077	LSM1	89	91.525	Notamacropus_eugenii
ENSLACG00000010947	LSM1	97	88.889	ENSOPRG00000000333	LSM1	100	88.889	Ochotona_princeps
ENSLACG00000010947	LSM1	98	90.678	ENSODEG00000004834	LSM1	89	90.678	Octodon_degus
ENSLACG00000010947	LSM1	99	81.667	ENSONIG00000010782	lsm1	90	81.667	Oreochromis_niloticus
ENSLACG00000010947	LSM1	98	91.525	ENSOANG00000003256	LSM1	89	91.525	Ornithorhynchus_anatinus
ENSLACG00000010947	LSM1	98	90.678	ENSOCUG00000015399	LSM1	89	90.678	Oryctolagus_cuniculus
ENSLACG00000010947	LSM1	99	82.500	ENSORLG00000030288	lsm1	90	82.500	Oryzias_latipes
ENSLACG00000010947	LSM1	99	80.833	ENSORLG00020006213	-	78	80.833	Oryzias_latipes_hni
ENSLACG00000010947	LSM1	99	82.500	ENSORLG00020003941	lsm1	90	82.500	Oryzias_latipes_hni
ENSLACG00000010947	LSM1	99	82.500	ENSORLG00015018350	lsm1	90	82.500	Oryzias_latipes_hsok
ENSLACG00000010947	LSM1	99	80.833	ENSOMEG00000012454	lsm1	90	80.833	Oryzias_melastigma
ENSLACG00000010947	LSM1	98	90.678	ENSOGAG00000015161	LSM1	89	90.678	Otolemur_garnettii
ENSLACG00000010947	LSM1	98	90.678	ENSOARG00000001317	LSM1	89	90.678	Ovis_aries
ENSLACG00000010947	LSM1	98	90.678	ENSPPAG00000032279	LSM1	89	90.678	Pan_paniscus
ENSLACG00000010947	LSM1	98	90.678	ENSPPRG00000014172	-	89	90.678	Panthera_pardus
ENSLACG00000010947	LSM1	98	90.678	ENSPTIG00000010289	LSM1	89	90.678	Panthera_tigris_altaica
ENSLACG00000010947	LSM1	98	90.678	ENSPTRG00000020169	LSM1	89	90.678	Pan_troglodytes
ENSLACG00000010947	LSM1	98	90.678	ENSPANG00000008814	LSM1	89	90.678	Papio_anubis
ENSLACG00000010947	LSM1	98	83.898	ENSPKIG00000019409	LSM1	88	83.898	Paramormyrops_kingsleyae
ENSLACG00000010947	LSM1	100	86.777	ENSPKIG00000001839	lsm1	89	88.136	Paramormyrops_kingsleyae
ENSLACG00000010947	LSM1	100	90.909	ENSPSIG00000012563	LSM1	93	90.909	Pelodiscus_sinensis
ENSLACG00000010947	LSM1	51	90.323	ENSPMGG00000022999	lsm1	59	90.323	Periophthalmus_magnuspinnatus
ENSLACG00000010947	LSM1	93	82.301	ENSPMAG00000002671	lsm1	100	82.301	Petromyzon_marinus
ENSLACG00000010947	LSM1	98	89.831	ENSPCIG00000008880	LSM1	89	89.831	Phascolarctos_cinereus
ENSLACG00000010947	LSM1	99	80.833	ENSPFOG00000016029	lsm1	90	80.833	Poecilia_formosa
ENSLACG00000010947	LSM1	99	80.833	ENSPLAG00000007879	lsm1	90	80.833	Poecilia_latipinna
ENSLACG00000010947	LSM1	99	80.833	ENSPMEG00000023550	lsm1	90	80.833	Poecilia_mexicana
ENSLACG00000010947	LSM1	99	80.833	ENSPREG00000009574	lsm1	90	80.833	Poecilia_reticulata
ENSLACG00000010947	LSM1	98	90.678	ENSPPYG00000018521	LSM1	89	90.678	Pongo_abelii
ENSLACG00000010947	LSM1	98	90.678	ENSPCOG00000020901	-	89	90.678	Propithecus_coquereli
ENSLACG00000010947	LSM1	98	90.678	ENSPVAG00000006016	LSM1	89	90.678	Pteropus_vampyrus
ENSLACG00000010947	LSM1	99	81.667	ENSPNYG00000018067	lsm1	90	81.667	Pundamilia_nyererei
ENSLACG00000010947	LSM1	99	80.833	ENSPNAG00000013707	lsm1	90	80.833	Pygocentrus_nattereri
ENSLACG00000010947	LSM1	98	88.983	ENSRNOG00000015375	Lsm1	89	88.983	Rattus_norvegicus
ENSLACG00000010947	LSM1	98	90.678	ENSRBIG00000027449	LSM1	89	90.678	Rhinopithecus_bieti
ENSLACG00000010947	LSM1	98	90.678	ENSRROG00000036074	LSM1	89	90.678	Rhinopithecus_roxellana
ENSLACG00000010947	LSM1	83	44.340	YJL124C	LSM1	62	44.340	Saccharomyces_cerevisiae
ENSLACG00000010947	LSM1	98	91.525	ENSSHAG00000017260	LSM1	89	91.525	Sarcophilus_harrisii
ENSLACG00000010947	LSM1	98	88.983	ENSSFOG00015019528	lsm1	89	88.983	Scleropages_formosus
ENSLACG00000010947	LSM1	99	81.667	ENSSMAG00000004930	lsm1	90	81.667	Scophthalmus_maximus
ENSLACG00000010947	LSM1	99	80.833	ENSSDUG00000021823	lsm1	90	80.833	Seriola_dumerili
ENSLACG00000010947	LSM1	99	80.833	ENSSLDG00000012154	lsm1	90	80.833	Seriola_lalandi_dorsalis
ENSLACG00000010947	LSM1	98	91.525	ENSSPUG00000014878	LSM1	89	91.525	Sphenodon_punctatus
ENSLACG00000010947	LSM1	99	80.833	ENSSPAG00000020548	lsm1	90	80.833	Stegastes_partitus
ENSLACG00000010947	LSM1	98	90.678	ENSSSCG00000039058	LSM1	89	90.678	Sus_scrofa
ENSLACG00000010947	LSM1	98	90.678	ENSTGUG00000004793	LSM1	89	90.678	Taeniopygia_guttata
ENSLACG00000010947	LSM1	99	83.333	ENSTRUG00000025239	lsm1	90	83.333	Takifugu_rubripes
ENSLACG00000010947	LSM1	98	83.898	ENSTNIG00000004055	lsm1	89	83.898	Tetraodon_nigroviridis
ENSLACG00000010947	LSM1	97	88.889	ENSTBEG00000015884	LSM1	100	88.889	Tupaia_belangeri
ENSLACG00000010947	LSM1	98	90.678	ENSTTRG00000004482	LSM1	89	90.678	Tursiops_truncatus
ENSLACG00000010947	LSM1	98	90.678	ENSUAMG00000004103	LSM1	89	90.678	Ursus_americanus
ENSLACG00000010947	LSM1	98	90.678	ENSUMAG00000009132	LSM1	89	90.678	Ursus_maritimus
ENSLACG00000010947	LSM1	51	96.774	ENSVPAG00000011593	LSM1	82	96.774	Vicugna_pacos
ENSLACG00000010947	LSM1	98	90.678	ENSVVUG00000020191	LSM1	89	90.678	Vulpes_vulpes
ENSLACG00000010947	LSM1	59	66.197	ENSVVUG00000014880	-	76	66.197	Vulpes_vulpes
ENSLACG00000010947	LSM1	98	86.066	ENSXETG00000009004	lsm1	89	86.066	Xenopus_tropicalis
ENSLACG00000010947	LSM1	99	80.000	ENSXCOG00000015631	lsm1	90	80.000	Xiphophorus_couchianus
ENSLACG00000010947	LSM1	99	80.000	ENSXMAG00000026637	lsm1	90	80.000	Xiphophorus_maculatus