EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000010974 (Gene tree)
Gene ID: 102354347
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 57912 bases
Position: chrJH127593.1:552887-610798
Accession: 102354347
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000012454	ResIII	PF04851.15	9.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000012547	SMARCAL1-201	5910	XM_006004303	ENSLACP00000012454	952 (aa)	-	H3AS33

Gene Model

Click here to download ENSLACG00000010974's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000010974's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000010974	SMARCAL1	100	49.599	ENSG00000138375	SMARCAL1	99	68.323	Homo_sapiens
ENSLACG00000010974	SMARCAL1	99	51.724	ENSAPOG00000020156	SMARCAL1	79	60.828	Acanthochromis_polyacanthus
ENSLACG00000010974	SMARCAL1	71	60.976	ENSACIG00000001500	smarcal1	89	60.976	Amphilophus_citrinellus
ENSLACG00000010974	SMARCAL1	97	51.699	ENSAOCG00000014266	SMARCAL1	99	51.713	Amphiprion_ocellaris
ENSLACG00000010974	SMARCAL1	99	51.603	ENSAPEG00000015861	SMARCAL1	99	51.411	Amphiprion_percula
ENSLACG00000010974	SMARCAL1	99	50.832	ENSATEG00000020624	SMARCAL1	100	50.569	Anabas_testudineus
ENSLACG00000010974	SMARCAL1	99	54.852	ENSAPLG00000009864	SMARCAL1	99	54.852	Anas_platyrhynchos
ENSLACG00000010974	SMARCAL1	99	52.959	ENSACAG00000004612	SMARCAL1	84	77.143	Anolis_carolinensis
ENSLACG00000010974	SMARCAL1	74	61.041	ENSACLG00000015990	SMARCAL1	99	52.114	Astatotilapia_calliptera
ENSLACG00000010974	SMARCAL1	99	53.597	ENSAMXG00000003350	smarcal1	99	53.750	Astyanax_mexicanus
ENSLACG00000010974	SMARCAL1	99	56.151	ENSCPBG00000013599	SMARCAL1	99	55.214	Chrysemys_picta_bellii
ENSLACG00000010974	SMARCAL1	66	43.750	ENSCING00000009308	-	100	43.750	Ciona_intestinalis
ENSLACG00000010974	SMARCAL1	96	51.717	ENSCSEG00000010785	SMARCAL1	98	51.554	Cynoglossus_semilaevis
ENSLACG00000010974	SMARCAL1	99	55.168	ENSCVAG00000018780	SMARCAL1	100	58.759	Cyprinodon_variegatus
ENSLACG00000010974	SMARCAL1	80	46.484	ENSEBUG00000011906	SMARCAL1	72	54.876	Eptatretus_burgeri
ENSLACG00000010974	SMARCAL1	76	57.923	ENSELUG00000010440	-	75	72.727	Esox_lucius
ENSLACG00000010974	SMARCAL1	99	53.925	ENSFALG00000003981	SMARCAL1	99	53.557	Ficedula_albicollis
ENSLACG00000010974	SMARCAL1	78	55.425	ENSFHEG00000008380	SMARCAL1	88	55.076	Fundulus_heteroclitus
ENSLACG00000010974	SMARCAL1	51	66.667	ENSGMOG00000010034	smarcal1	86	66.667	Gadus_morhua
ENSLACG00000010974	SMARCAL1	99	54.073	ENSGALG00000011475	RPL37A	99	53.721	Gallus_gallus
ENSLACG00000010974	SMARCAL1	65	63.501	ENSGACG00000006073	SMARCAL1	100	63.501	Gasterosteus_aculeatus
ENSLACG00000010974	SMARCAL1	93	55.603	ENSGAGG00000015660	SMARCAL1	71	67.123	Gopherus_agassizii
ENSLACG00000010974	SMARCAL1	98	52.059	ENSHBUG00000002973	smarcal1	99	52.063	Haplochromis_burtoni
ENSLACG00000010974	SMARCAL1	78	55.925	ENSHCOG00000017921	smarcal1	80	60.268	Hippocampus_comes
ENSLACG00000010974	SMARCAL1	72	60.058	ENSKMAG00000012023	SMARCAL1	99	50.921	Kryptolebias_marmoratus
ENSLACG00000010974	SMARCAL1	76	55.902	ENSLBEG00000022915	smarcal1	95	55.540	Labrus_bergylta
ENSLACG00000010974	SMARCAL1	91	52.218	ENSLBEG00000003493	smarcal1	100	50.616	Labrus_bergylta
ENSLACG00000010974	SMARCAL1	93	54.308	ENSLOCG00000009637	smarcal1	94	63.636	Lepisosteus_oculatus
ENSLACG00000010974	SMARCAL1	96	52.448	ENSMAMG00000000828	SMARCAL1	98	52.391	Mastacembelus_armatus
ENSLACG00000010974	SMARCAL1	74	60.900	ENSMZEG00005007660	SMARCAL1	99	52.008	Maylandia_zebra
ENSLACG00000010974	SMARCAL1	99	54.912	ENSMGAG00000011658	SMARCAL1	99	55.176	Meleagris_gallopavo
ENSLACG00000010974	SMARCAL1	79	52.679	ENSMMOG00000003842	smarcal1	87	55.076	Mola_mola
ENSLACG00000010974	SMARCAL1	99	51.057	ENSMODG00000015544	SMARCAL1	99	51.057	Monodelphis_domestica
ENSLACG00000010974	SMARCAL1	79	56.750	ENSNBRG00000016273	smarcal1	90	59.801	Neolamprologus_brichardi
ENSLACG00000010974	SMARCAL1	93	51.054	ENSMEUG00000004395	SMARCAL1	100	51.153	Notamacropus_eugenii
ENSLACG00000010974	SMARCAL1	98	51.895	ENSONIG00000009036	smarcal1	99	62.115	Oreochromis_niloticus
ENSLACG00000010974	SMARCAL1	99	49.226	ENSORLG00000016455	SMARCAL1	100	49.068	Oryzias_latipes
ENSLACG00000010974	SMARCAL1	99	49.642	ENSORLG00020001610	SMARCAL1	93	56.818	Oryzias_latipes_hni
ENSLACG00000010974	SMARCAL1	99	49.539	ENSORLG00015001865	SMARCAL1	100	49.430	Oryzias_latipes_hsok
ENSLACG00000010974	SMARCAL1	99	49.741	ENSOMEG00000001845	smarcal1	99	56.031	Oryzias_melastigma
ENSLACG00000010974	SMARCAL1	99	48.454	ENSPMGG00000019092	SMARCAL1	89	55.237	Periophthalmus_magnuspinnatus
ENSLACG00000010974	SMARCAL1	99	50.354	ENSPCIG00000022514	SMARCAL1	74	59.285	Phascolarctos_cinereus
ENSLACG00000010974	SMARCAL1	90	51.580	ENSPFOG00000000560	SMARCAL1	84	56.671	Poecilia_formosa
ENSLACG00000010974	SMARCAL1	90	51.467	ENSPMEG00000018146	SMARCAL1	84	56.539	Poecilia_mexicana
ENSLACG00000010974	SMARCAL1	52	57.485	ENSPREG00000009591	SMARCAL1	78	63.510	Poecilia_reticulata
ENSLACG00000010974	SMARCAL1	83	82.759	ENSPNAG00000014900	smarcal1	87	82.759	Pygocentrus_nattereri
ENSLACG00000010974	SMARCAL1	99	48.223	ENSSHAG00000013538	SMARCAL1	85	56.676	Sarcophilus_harrisii
ENSLACG00000010974	SMARCAL1	99	49.695	ENSSMAG00000010427	SMARCAL1	100	49.949	Scophthalmus_maximus
ENSLACG00000010974	SMARCAL1	97	50.427	ENSSDUG00000017470	SMARCAL1	94	49.947	Seriola_dumerili
ENSLACG00000010974	SMARCAL1	99	54.054	ENSSPUG00000015369	SMARCAL1	99	54.054	Sphenodon_punctatus
ENSLACG00000010974	SMARCAL1	69	61.712	ENSSPAG00000003742	smarcal1	89	59.770	Stegastes_partitus
ENSLACG00000010974	SMARCAL1	72	56.566	ENSSSCG00000035501	SMARCAL1	76	57.205	Sus_scrofa
ENSLACG00000010974	SMARCAL1	72	63.196	ENSTGUG00000005079	SMARCAL1	100	63.196	Taeniopygia_guttata
ENSLACG00000010974	SMARCAL1	73	53.191	ENSTRUG00000010701	SMARCAL1	79	53.191	Takifugu_rubripes
ENSLACG00000010974	SMARCAL1	91	51.818	ENSTTRG00000009001	SMARCAL1	90	51.818	Tursiops_truncatus
ENSLACG00000010974	SMARCAL1	99	57.012	ENSXETG00000000465	smarcal1	99	56.881	Xenopus_tropicalis