EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000011001 (Gene tree)
Gene ID: 102350797
Gene Symbol: RAB20
Alias: FLJ20429
Full Name: RAB20%2C member RAS oncogene family
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 49028 bases
Position: chrJH127084.1:510304-559331
Accession: 102350797
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000012485	MMR_HSR1	PF01926.23	5.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000012578	RAB20-201	3331	XM_005999390	ENSLACP00000012485	235 (aa)	XP_005999452	H3AS64

Gene Model

Click here to download ENSLACG00000011001's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000011001's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000011001	RAB20	55	32.090	ENSLACG00000010461	RAB12	54	32.090
ENSLACG00000011001	RAB20	53	35.385	ENSLACG00000006407	RAB30	64	35.385
ENSLACG00000011001	RAB20	54	31.343	ENSLACG00000002332	-	63	31.343
ENSLACG00000011001	RAB20	50	31.200	ENSLACG00000018793	RAN	84	31.200
ENSLACG00000011001	RAB20	57	37.063	ENSLACG00000015770	RAB7A	69	37.063
ENSLACG00000011001	RAB20	53	37.209	ENSLACG00000022111	-	65	37.209
ENSLACG00000011001	RAB20	83	32.683	ENSLACG00000008809	zgc:100918	80	32.683
ENSLACG00000011001	RAB20	55	34.328	ENSLACG00000007092	RAB22A	69	34.328
ENSLACG00000011001	RAB20	61	32.667	ENSLACG00000014446	RAB2B	91	32.667
ENSLACG00000011001	RAB20	52	31.538	ENSLACG00000016074	RAB39B	61	31.538
ENSLACG00000011001	RAB20	66	30.488	ENSLACG00000012521	RAB2A	77	30.488
ENSLACG00000011001	RAB20	57	30.070	ENSLACG00000001081	RAB34	54	30.070
ENSLACG00000011001	RAB20	55	36.232	ENSLACG00000017891	RAB9B	64	36.232
ENSLACG00000011001	RAB20	62	30.921	ENSLACG00000011181	RAB14	71	30.921

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000011001	RAB20	99	63.281	ENSATEG00000011117	rab20	99	63.281	Anabas_testudineus
ENSLACG00000011001	RAB20	99	73.276	ENSAPLG00000011744	RAB20	99	73.276	Anas_platyrhynchos
ENSLACG00000011001	RAB20	98	70.130	ENSACAG00000014045	RAB20	99	70.130	Anolis_carolinensis
ENSLACG00000011001	RAB20	99	61.885	ENSAMXG00000003504	rab20	99	62.295	Astyanax_mexicanus
ENSLACG00000011001	RAB20	98	74.459	ENSCPBG00000005866	RAB20	99	74.459	Chrysemys_picta_bellii
ENSLACG00000011001	RAB20	99	66.094	ENSCSEG00000011160	rab20	99	66.094	Cynoglossus_semilaevis
ENSLACG00000011001	RAB20	99	67.635	ENSDARG00000005049	rab20	98	67.635	Danio_rerio
ENSLACG00000011001	RAB20	99	61.569	ENSELUG00000004092	rab20	97	61.569	Esox_lucius
ENSLACG00000011001	RAB20	99	70.815	ENSFALG00000004409	RAB20	99	70.815	Ficedula_albicollis
ENSLACG00000011001	RAB20	99	67.782	ENSGACG00000003527	rab20	99	67.782	Gasterosteus_aculeatus
ENSLACG00000011001	RAB20	99	61.508	ENSHCOG00000013468	rab20	97	61.508	Hippocampus_comes
ENSLACG00000011001	RAB20	99	67.083	ENSIPUG00000018288	RAB20	97	67.932	Ictalurus_punctatus
ENSLACG00000011001	RAB20	99	67.083	ENSIPUG00000000432	RAB20	97	67.932	Ictalurus_punctatus
ENSLACG00000011001	RAB20	99	64.202	ENSMAMG00000015214	rab20	97	64.202	Mastacembelus_armatus
ENSLACG00000011001	RAB20	99	66.245	ENSMMOG00000020022	rab20	99	66.245	Mola_mola
ENSLACG00000011001	RAB20	99	65.665	ENSMEUG00000009442	RAB20	99	65.665	Notamacropus_eugenii
ENSLACG00000011001	RAB20	87	45.327	ENSPMAG00000004439	rab20	100	45.794	Petromyzon_marinus
ENSLACG00000011001	RAB20	99	66.527	ENSPNAG00000008867	rab20	99	66.527	Pygocentrus_nattereri
ENSLACG00000011001	RAB20	99	62.205	ENSSMAG00000018818	rab20	99	62.205	Scophthalmus_maximus
ENSLACG00000011001	RAB20	99	62.891	ENSSDUG00000005148	rab20	97	62.891	Seriola_dumerili
ENSLACG00000011001	RAB20	99	70.690	ENSTGUG00000008797	RAB20	99	70.690	Taeniopygia_guttata
ENSLACG00000011001	RAB20	99	59.696	ENSTRUG00000022951	rab20	97	59.696	Takifugu_rubripes
ENSLACG00000011001	RAB20	93	66.818	ENSTNIG00000013920	rab20	99	64.831	Tetraodon_nigroviridis