EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000011028 (Gene tree)
Gene ID: 102355492
Gene Symbol: RPUSD4
Alias: FLJ14494
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 9586 bases
Position: chrJH127210.1:559081-568666
Accession: 102355492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000012516	PseudoU_synth_2	PF00849.22	2.9e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000012609	RPUSD4-201	2299	XM_006000868	ENSLACP00000012516	395 (aa)	XP_006000930	H3AS95

Gene Model

Click here to download ENSLACG00000011028's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000011028's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000011028	RPUSD4	80	62.617	ENSG00000165526	RPUSD4	85	61.963	Homo_sapiens
ENSLACG00000011028	RPUSD4	90	51.233	ENSAPOG00000011024	rpusd4	81	53.313	Acanthochromis_polyacanthus
ENSLACG00000011028	RPUSD4	58	66.667	ENSAMEG00000005953	-	92	66.667	Ailuropoda_melanoleuca
ENSLACG00000011028	RPUSD4	82	63.272	ENSAMEG00000000127	-	85	63.272	Ailuropoda_melanoleuca
ENSLACG00000011028	RPUSD4	81	50.155	ENSACIG00000003533	rpusd4	95	50.155	Amphilophus_citrinellus
ENSLACG00000011028	RPUSD4	90	50.833	ENSAOCG00000015409	rpusd4	80	53.354	Amphiprion_ocellaris
ENSLACG00000011028	RPUSD4	90	51.389	ENSAPEG00000018935	rpusd4	80	53.963	Amphiprion_percula
ENSLACG00000011028	RPUSD4	88	51.558	ENSATEG00000008059	rpusd4	80	54.128	Anabas_testudineus
ENSLACG00000011028	RPUSD4	71	61.290	ENSAPLG00000013250	RPUSD4	99	60.000	Anas_platyrhynchos
ENSLACG00000011028	RPUSD4	91	58.726	ENSACAG00000000189	RPUSD4	89	63.272	Anolis_carolinensis
ENSLACG00000011028	RPUSD4	82	61.043	ENSANAG00000024050	RPUSD4	87	61.043	Aotus_nancymaae
ENSLACG00000011028	RPUSD4	82	51.385	ENSACLG00000020996	rpusd4	83	51.385	Astatotilapia_calliptera
ENSLACG00000011028	RPUSD4	86	52.754	ENSAMXG00000031479	rpusd4	93	53.474	Astyanax_mexicanus
ENSLACG00000011028	RPUSD4	83	60.550	ENSBTAG00000020900	RPUSD4	86	60.550	Bos_taurus
ENSLACG00000011028	RPUSD4	82	61.043	ENSCJAG00000042850	RPUSD4	81	61.043	Callithrix_jacchus
ENSLACG00000011028	RPUSD4	82	64.815	ENSCAFG00000010488	RPUSD4	85	64.815	Canis_familiaris
ENSLACG00000011028	RPUSD4	82	64.815	ENSCAFG00020010621	RPUSD4	85	64.815	Canis_lupus_dingo
ENSLACG00000011028	RPUSD4	82	61.610	ENSCHIG00000009975	RPUSD4	85	61.610	Capra_hircus
ENSLACG00000011028	RPUSD4	83	62.385	ENSTSYG00000008456	RPUSD4	87	62.385	Carlito_syrichta
ENSLACG00000011028	RPUSD4	62	61.066	ENSCAPG00000006040	RPUSD4	94	61.066	Cavia_aperea
ENSLACG00000011028	RPUSD4	85	60.778	ENSCPOG00000014971	RPUSD4	85	61.994	Cavia_porcellus
ENSLACG00000011028	RPUSD4	82	61.963	ENSCCAG00000027838	RPUSD4	87	61.963	Cebus_capucinus
ENSLACG00000011028	RPUSD4	82	61.111	ENSCATG00000041570	RPUSD4	85	61.111	Cercocebus_atys
ENSLACG00000011028	RPUSD4	85	61.012	ENSCLAG00000016553	RPUSD4	85	62.229	Chinchilla_lanigera
ENSLACG00000011028	RPUSD4	82	62.037	ENSCSAG00000002274	RPUSD4	85	62.037	Chlorocebus_sabaeus
ENSLACG00000011028	RPUSD4	68	65.926	ENSCHOG00000010249	RPUSD4	95	65.926	Choloepus_hoffmanni
ENSLACG00000011028	RPUSD4	73	67.596	ENSCPBG00000011175	RPUSD4	99	67.596	Chrysemys_picta_bellii
ENSLACG00000011028	RPUSD4	70	41.135	ENSCSAVG00000000872	-	55	41.135	Ciona_savignyi
ENSLACG00000011028	RPUSD4	82	60.802	ENSCANG00000039684	RPUSD4	85	60.802	Colobus_angolensis_palliatus
ENSLACG00000011028	RPUSD4	94	57.333	ENSCGRG00001024141	Rpusd4	85	61.111	Cricetulus_griseus_chok1gshd
ENSLACG00000011028	RPUSD4	94	57.333	ENSCGRG00000014415	Rpusd4	85	61.111	Cricetulus_griseus_crigri
ENSLACG00000011028	RPUSD4	82	55.183	ENSCVAG00000000392	rpusd4	92	55.183	Cyprinodon_variegatus
ENSLACG00000011028	RPUSD4	82	55.183	ENSCVAG00000008761	rpusd4	83	55.183	Cyprinodon_variegatus
ENSLACG00000011028	RPUSD4	75	53.512	ENSDARG00000012674	rpusd4	90	51.393	Danio_rerio
ENSLACG00000011028	RPUSD4	85	60.767	ENSDNOG00000020026	RPUSD4	86	62.270	Dasypus_novemcinctus
ENSLACG00000011028	RPUSD4	85	59.524	ENSDORG00000016717	Rpusd4	85	60.736	Dipodomys_ordii
ENSLACG00000011028	RPUSD4	85	61.194	ENSETEG00000013953	RPUSD4	86	62.422	Echinops_telfairi
ENSLACG00000011028	RPUSD4	85	60.767	ENSEASG00005022982	RPUSD4	85	61.963	Equus_asinus_asinus
ENSLACG00000011028	RPUSD4	85	60.177	ENSECAG00000000557	RPUSD4	85	61.350	Equus_caballus
ENSLACG00000011028	RPUSD4	65	64.607	ENSEEUG00000014036	RPUSD4	68	64.607	Erinaceus_europaeus
ENSLACG00000011028	RPUSD4	89	53.571	ENSELUG00000008075	rpusd4	87	56.456	Esox_lucius
ENSLACG00000011028	RPUSD4	82	62.963	ENSFCAG00000029789	RPUSD4	85	62.963	Felis_catus
ENSLACG00000011028	RPUSD4	83	57.927	ENSFALG00000005171	RPUSD4	96	57.927	Ficedula_albicollis
ENSLACG00000011028	RPUSD4	85	59.644	ENSFDAG00000014307	RPUSD4	86	60.802	Fukomys_damarensis
ENSLACG00000011028	RPUSD4	89	50.843	ENSFHEG00000004329	rpusd4	84	53.354	Fundulus_heteroclitus
ENSLACG00000011028	RPUSD4	81	50.156	ENSGMOG00000017726	rpusd4	96	50.156	Gadus_morhua
ENSLACG00000011028	RPUSD4	71	63.441	ENSGALG00000024326	RPUSD4	91	58.589	Gallus_gallus
ENSLACG00000011028	RPUSD4	84	49.558	ENSGAFG00000021559	rpusd4	84	49.849	Gambusia_affinis
ENSLACG00000011028	RPUSD4	82	51.840	ENSGACG00000001657	rpusd4	96	52.347	Gasterosteus_aculeatus
ENSLACG00000011028	RPUSD4	81	65.732	ENSGAGG00000000132	RPUSD4	89	65.732	Gopherus_agassizii
ENSLACG00000011028	RPUSD4	80	62.928	ENSGGOG00000016494	RPUSD4	85	62.270	Gorilla_gorilla
ENSLACG00000011028	RPUSD4	82	51.385	ENSHBUG00000022838	rpusd4	83	51.385	Haplochromis_burtoni
ENSLACG00000011028	RPUSD4	85	59.347	ENSHGLG00000002285	RPUSD4	85	60.494	Heterocephalus_glaber_female
ENSLACG00000011028	RPUSD4	85	59.347	ENSHGLG00100006385	RPUSD4	85	60.494	Heterocephalus_glaber_male
ENSLACG00000011028	RPUSD4	87	51.594	ENSHCOG00000006612	rpusd4	83	53.704	Hippocampus_comes
ENSLACG00000011028	RPUSD4	86	55.132	ENSIPUG00000023879	rusd4	85	55.891	Ictalurus_punctatus
ENSLACG00000011028	RPUSD4	85	61.310	ENSSTOG00000025280	RPUSD4	88	62.539	Ictidomys_tridecemlineatus
ENSLACG00000011028	RPUSD4	85	60.597	ENSJJAG00000018673	Rpusd4	87	61.801	Jaculus_jaculus
ENSLACG00000011028	RPUSD4	85	53.061	ENSKMAG00000021805	rpusd4	85	54.573	Kryptolebias_marmoratus
ENSLACG00000011028	RPUSD4	87	51.289	ENSLBEG00000020394	rpusd4	91	53.333	Labrus_bergylta
ENSLACG00000011028	RPUSD4	82	50.462	ENSLOCG00000003124	rpusd4	86	50.462	Lepisosteus_oculatus
ENSLACG00000011028	RPUSD4	85	61.012	ENSLAFG00000005211	RPUSD4	100	55.479	Loxodonta_africana
ENSLACG00000011028	RPUSD4	82	61.728	ENSMFAG00000039513	RPUSD4	85	61.728	Macaca_fascicularis
ENSLACG00000011028	RPUSD4	82	62.037	ENSMMUG00000007933	RPUSD4	85	62.037	Macaca_mulatta
ENSLACG00000011028	RPUSD4	82	61.728	ENSMNEG00000027414	RPUSD4	85	61.728	Macaca_nemestrina
ENSLACG00000011028	RPUSD4	82	61.728	ENSMLEG00000042461	RPUSD4	85	61.728	Mandrillus_leucophaeus
ENSLACG00000011028	RPUSD4	90	49.727	ENSMAMG00000023839	rpusd4	85	52.108	Mastacembelus_armatus
ENSLACG00000011028	RPUSD4	82	51.385	ENSMZEG00005011999	rpusd4	83	51.385	Maylandia_zebra
ENSLACG00000011028	RPUSD4	70	62.816	ENSMGAG00000000840	RPUSD4	99	57.944	Meleagris_gallopavo
ENSLACG00000011028	RPUSD4	82	61.231	ENSMAUG00000010280	Rpusd4	85	61.231	Mesocricetus_auratus
ENSLACG00000011028	RPUSD4	82	63.889	ENSMICG00000015979	RPUSD4	90	66.667	Microcebus_murinus
ENSLACG00000011028	RPUSD4	94	55.882	ENSMOCG00000000661	Rpusd4	85	59.568	Microtus_ochrogaster
ENSLACG00000011028	RPUSD4	78	55.272	ENSMMOG00000021731	rpusd4	92	55.272	Mola_mola
ENSLACG00000011028	RPUSD4	79	64.856	ENSMODG00000004521	RPUSD4	80	64.856	Monodelphis_domestica
ENSLACG00000011028	RPUSD4	75	54.605	ENSMALG00000005839	rpusd4	94	53.145	Monopterus_albus
ENSLACG00000011028	RPUSD4	94	56.952	MGP_CAROLIEiJ_G0031954	Rpusd4	85	61.420	Mus_caroli
ENSLACG00000011028	RPUSD4	94	56.684	ENSMUSG00000032044	Rpusd4	85	61.111	Mus_musculus
ENSLACG00000011028	RPUSD4	94	57.105	MGP_PahariEiJ_G0014819	Rpusd4	85	61.420	Mus_pahari
ENSLACG00000011028	RPUSD4	94	56.300	MGP_SPRETEiJ_G0033078	Rpusd4	85	61.111	Mus_spretus
ENSLACG00000011028	RPUSD4	82	62.654	ENSMPUG00000006608	RPUSD4	86	62.654	Mustela_putorius_furo
ENSLACG00000011028	RPUSD4	64	63.780	ENSMLUG00000029348	-	99	63.780	Myotis_lucifugus
ENSLACG00000011028	RPUSD4	85	60.831	ENSMLUG00000017328	-	84	62.305	Myotis_lucifugus
ENSLACG00000011028	RPUSD4	85	62.426	ENSNGAG00000020847	Rpusd4	85	63.692	Nannospalax_galili
ENSLACG00000011028	RPUSD4	81	51.863	ENSNBRG00000005207	rpusd4	93	51.863	Neolamprologus_brichardi
ENSLACG00000011028	RPUSD4	82	61.728	ENSNLEG00000007465	RPUSD4	85	61.728	Nomascus_leucogenys
ENSLACG00000011028	RPUSD4	84	64.759	ENSMEUG00000004370	RPUSD4	87	64.848	Notamacropus_eugenii
ENSLACG00000011028	RPUSD4	85	59.701	ENSODEG00000004577	RPUSD4	85	61.111	Octodon_degus
ENSLACG00000011028	RPUSD4	91	48.619	ENSONIG00000018879	rpusd4	88	52.308	Oreochromis_niloticus
ENSLACG00000011028	RPUSD4	74	58.644	ENSOANG00000007247	RPUSD4	94	58.586	Ornithorhynchus_anatinus
ENSLACG00000011028	RPUSD4	85	61.424	ENSOCUG00000017039	RPUSD4	86	62.654	Oryctolagus_cuniculus
ENSLACG00000011028	RPUSD4	86	52.754	ENSORLG00000002750	rpusd4	88	54.062	Oryzias_latipes
ENSLACG00000011028	RPUSD4	89	50.700	ENSORLG00020002044	rpusd4	81	53.560	Oryzias_latipes_hni
ENSLACG00000011028	RPUSD4	85	52.339	ENSORLG00015020034	rpusd4	81	54.012	Oryzias_latipes_hsok
ENSLACG00000011028	RPUSD4	89	53.371	ENSOMEG00000004861	rpusd4	80	56.347	Oryzias_melastigma
ENSLACG00000011028	RPUSD4	80	63.636	ENSOGAG00000008922	RPUSD4	85	63.272	Otolemur_garnettii
ENSLACG00000011028	RPUSD4	82	61.610	ENSOARG00000012238	RPUSD4	85	61.610	Ovis_aries
ENSLACG00000011028	RPUSD4	80	62.617	ENSPPAG00000042883	RPUSD4	80	61.963	Pan_paniscus
ENSLACG00000011028	RPUSD4	82	62.654	ENSPPRG00000003081	RPUSD4	85	62.654	Panthera_pardus
ENSLACG00000011028	RPUSD4	82	62.654	ENSPTIG00000012059	RPUSD4	85	65.101	Panthera_tigris_altaica
ENSLACG00000011028	RPUSD4	80	62.617	ENSPTRG00000004454	RPUSD4	85	61.963	Pan_troglodytes
ENSLACG00000011028	RPUSD4	82	61.420	ENSPANG00000015040	RPUSD4	85	61.420	Papio_anubis
ENSLACG00000011028	RPUSD4	91	58.611	ENSPKIG00000023986	rpusd4	83	62.733	Paramormyrops_kingsleyae
ENSLACG00000011028	RPUSD4	75	67.450	ENSPSIG00000014268	RPUSD4	95	67.450	Pelodiscus_sinensis
ENSLACG00000011028	RPUSD4	81	51.703	ENSPMGG00000002806	rpusd4	90	51.553	Periophthalmus_magnuspinnatus
ENSLACG00000011028	RPUSD4	94	49.867	ENSPEMG00000000278	Rpusd4	85	53.231	Peromyscus_maniculatus_bairdii
ENSLACG00000011028	RPUSD4	77	41.667	ENSPMAG00000008183	rpusd4	97	41.667	Petromyzon_marinus
ENSLACG00000011028	RPUSD4	82	64.832	ENSPCIG00000010212	RPUSD4	89	64.832	Phascolarctos_cinereus
ENSLACG00000011028	RPUSD4	87	49.451	ENSPFOG00000019030	rpusd4	87	51.343	Poecilia_formosa
ENSLACG00000011028	RPUSD4	87	49.724	ENSPLAG00000016848	rpusd4	84	51.652	Poecilia_latipinna
ENSLACG00000011028	RPUSD4	87	48.611	ENSPMEG00000017534	rpusd4	84	50.453	Poecilia_mexicana
ENSLACG00000011028	RPUSD4	84	49.565	ENSPREG00000005689	rpusd4	81	51.735	Poecilia_reticulata
ENSLACG00000011028	RPUSD4	82	61.350	ENSPPYG00000004043	RPUSD4	85	61.350	Pongo_abelii
ENSLACG00000011028	RPUSD4	68	58.989	ENSPCAG00000000753	RPUSD4	68	58.989	Procavia_capensis
ENSLACG00000011028	RPUSD4	82	58.589	ENSPCOG00000020694	RPUSD4	86	58.589	Propithecus_coquereli
ENSLACG00000011028	RPUSD4	85	59.882	ENSPVAG00000000988	RPUSD4	86	61.043	Pteropus_vampyrus
ENSLACG00000011028	RPUSD4	82	51.077	ENSPNYG00000009652	rpusd4	83	51.077	Pundamilia_nyererei
ENSLACG00000011028	RPUSD4	86	51.170	ENSPNAG00000012264	rpusd4	86	52.615	Pygocentrus_nattereri
ENSLACG00000011028	RPUSD4	94	56.417	ENSRNOG00000011567	Rpusd4	87	59.819	Rattus_norvegicus
ENSLACG00000011028	RPUSD4	81	61.300	ENSRBIG00000034842	RPUSD4	85	61.111	Rhinopithecus_bieti
ENSLACG00000011028	RPUSD4	81	61.300	ENSRROG00000039753	RPUSD4	85	61.111	Rhinopithecus_roxellana
ENSLACG00000011028	RPUSD4	82	61.656	ENSSBOG00000030413	RPUSD4	87	61.656	Saimiri_boliviensis_boliviensis
ENSLACG00000011028	RPUSD4	75	65.101	ENSSHAG00000008304	RPUSD4	98	65.101	Sarcophilus_harrisii
ENSLACG00000011028	RPUSD4	83	58.735	ENSSFOG00015006203	rpusd4	90	59.036	Scleropages_formosus
ENSLACG00000011028	RPUSD4	90	50.000	ENSSMAG00000020978	rpusd4	85	52.484	Scophthalmus_maximus
ENSLACG00000011028	RPUSD4	90	49.862	ENSSDUG00000013399	rpusd4	85	52.439	Seriola_dumerili
ENSLACG00000011028	RPUSD4	85	50.872	ENSSLDG00000023507	rpusd4	85	52.439	Seriola_lalandi_dorsalis
ENSLACG00000011028	RPUSD4	81	62.154	ENSSPUG00000001401	RPUSD4	90	62.462	Sphenodon_punctatus
ENSLACG00000011028	RPUSD4	90	52.486	ENSSPAG00000012163	rpusd4	84	54.711	Stegastes_partitus
ENSLACG00000011028	RPUSD4	85	60.119	ENSSSCG00000015233	RPUSD4	85	61.300	Sus_scrofa
ENSLACG00000011028	RPUSD4	75	60.403	ENSTGUG00000000773	RPUSD4	99	60.403	Taeniopygia_guttata
ENSLACG00000011028	RPUSD4	86	51.163	ENSTRUG00000012283	rpusd4	83	53.231	Takifugu_rubripes
ENSLACG00000011028	RPUSD4	88	52.101	ENSTNIG00000014676	rpusd4	83	54.462	Tetraodon_nigroviridis
ENSLACG00000011028	RPUSD4	85	60.417	ENSTTRG00000001555	RPUSD4	85	61.610	Tursiops_truncatus
ENSLACG00000011028	RPUSD4	82	63.889	ENSUMAG00000002219	RPUSD4	85	63.889	Ursus_maritimus
ENSLACG00000011028	RPUSD4	60	58.996	ENSVPAG00000001066	RPUSD4	85	60.619	Vicugna_pacos
ENSLACG00000011028	RPUSD4	82	64.198	ENSVVUG00000020101	RPUSD4	85	64.198	Vulpes_vulpes
ENSLACG00000011028	RPUSD4	89	48.361	ENSXCOG00000004676	rpusd4	86	50.453	Xiphophorus_couchianus
ENSLACG00000011028	RPUSD4	90	48.361	ENSXMAG00000023351	rpusd4	84	50.755	Xiphophorus_maculatus