EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000011172 (Gene tree)
Gene ID: 102359296
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 21251 bases
Position: chrJH126684.1:575798-597048
Accession: 102359296
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000012680	PPR	PF01535.20	5.9e-15	1	2
ENSLACP00000012680	PPR	PF01535.20	5.9e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000012774	-	3415	XM_005992307	ENSLACP00000012680	706 (aa)	XP_005992370	H3ASQ9

Gene Model

Click here to download ENSLACG00000011172's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000011172's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000011172	ptcd1	86	58.333	ENSG00000106246	PTCD1	87	58.039	Homo_sapiens
ENSLACG00000011172	ptcd1	86	58.333	ENSG00000248919	ATP5MF-PTCD1	82	58.039	Homo_sapiens
ENSLACG00000011172	ptcd1	81	47.818	ENSAPOG00000010679	ptcd1	88	47.818	Acanthochromis_polyacanthus
ENSLACG00000011172	ptcd1	87	57.052	ENSAMEG00000006224	-	82	57.052	Ailuropoda_melanoleuca
ENSLACG00000011172	ptcd1	82	49.490	ENSACIG00000017861	ptcd1	83	49.490	Amphilophus_citrinellus
ENSLACG00000011172	ptcd1	85	49.172	ENSAOCG00000020741	-	83	48.760	Amphiprion_ocellaris
ENSLACG00000011172	ptcd1	81	48.180	ENSAOCG00000022617	ptcd1	84	48.007	Amphiprion_ocellaris
ENSLACG00000011172	ptcd1	85	48.671	ENSAPEG00000022632	ptcd1	83	48.339	Amphiprion_percula
ENSLACG00000011172	ptcd1	82	51.195	ENSATEG00000007016	ptcd1	81	51.024	Anabas_testudineus
ENSLACG00000011172	ptcd1	84	61.194	ENSAPLG00000006862	-	95	61.148	Anas_platyrhynchos
ENSLACG00000011172	ptcd1	91	58.398	ENSACAG00000012871	-	85	58.243	Anolis_carolinensis
ENSLACG00000011172	ptcd1	86	58.560	ENSANAG00000035790	-	90	58.080	Aotus_nancymaae
ENSLACG00000011172	ptcd1	82	49.578	ENSACLG00000002824	ptcd1	80	49.578	Astatotilapia_calliptera
ENSLACG00000011172	ptcd1	86	52.019	ENSAMXG00000037292	ptcd1	89	52.019	Astyanax_mexicanus
ENSLACG00000011172	ptcd1	84	58.891	ENSBTAG00000020440	-	75	58.075	Bos_taurus
ENSLACG00000011172	ptcd1	84	59.571	ENSCJAG00000015815	-	88	58.615	Callithrix_jacchus
ENSLACG00000011172	ptcd1	84	58.852	ENSCAFG00000015055	-	79	58.852	Canis_familiaris
ENSLACG00000011172	ptcd1	90	55.963	ENSCAFG00020014480	-	85	55.963	Canis_lupus_dingo
ENSLACG00000011172	ptcd1	86	58.937	ENSCHIG00000027000	-	86	58.132	Capra_hircus
ENSLACG00000011172	ptcd1	83	58.236	ENSTSYG00000029495	-	87	57.189	Carlito_syrichta
ENSLACG00000011172	ptcd1	83	57.616	ENSCAPG00000014660	-	93	55.627	Cavia_aperea
ENSLACG00000011172	ptcd1	83	57.947	ENSCPOG00000001780	-	91	54.058	Cavia_porcellus
ENSLACG00000011172	ptcd1	84	58.882	ENSCCAG00000034025	-	88	58.147	Cebus_capucinus
ENSLACG00000011172	ptcd1	86	58.587	ENSCATG00000040859	-	87	58.587	Cercocebus_atys
ENSLACG00000011172	ptcd1	84	58.553	ENSCLAG00000006354	-	92	55.793	Chinchilla_lanigera
ENSLACG00000011172	ptcd1	78	58.615	ENSCSAG00000017794	-	84	57.958	Chlorocebus_sabaeus
ENSLACG00000011172	ptcd1	93	59.045	ENSCPBG00000020866	-	93	59.045	Chrysemys_picta_bellii
ENSLACG00000011172	ptcd1	77	30.018	ENSCING00000007717	-	91	30.000	Ciona_intestinalis
ENSLACG00000011172	ptcd1	86	58.587	ENSCANG00000023441	-	87	58.587	Colobus_angolensis_palliatus
ENSLACG00000011172	ptcd1	87	57.643	ENSCGRG00001023686	Ptcd1	88	57.643	Cricetulus_griseus_chok1gshd
ENSLACG00000011172	ptcd1	91	55.622	ENSCGRG00000015031	Ptcd1	92	55.622	Cricetulus_griseus_crigri
ENSLACG00000011172	ptcd1	86	46.850	ENSCSEG00000002378	ptcd1	84	47.173	Cynoglossus_semilaevis
ENSLACG00000011172	ptcd1	84	49.747	ENSCVAG00000003621	ptcd1	88	49.747	Cyprinodon_variegatus
ENSLACG00000011172	ptcd1	82	50.947	ENSCVAG00000015826	ptcd1	81	50.947	Cyprinodon_variegatus
ENSLACG00000011172	ptcd1	87	51.823	ENSDARG00000076176	ptcd1	89	51.189	Danio_rerio
ENSLACG00000011172	ptcd1	84	57.818	ENSDNOG00000009957	-	85	57.120	Dasypus_novemcinctus
ENSLACG00000011172	ptcd1	84	58.882	ENSDORG00000000740	Ptcd1	89	58.307	Dipodomys_ordii
ENSLACG00000011172	ptcd1	84	41.486	ENSEBUG00000014515	ptcd1	97	42.609	Eptatretus_burgeri
ENSLACG00000011172	ptcd1	85	58.007	ENSEASG00005002480	-	88	57.937	Equus_asinus_asinus
ENSLACG00000011172	ptcd1	85	58.170	ENSECAG00000016617	-	88	57.937	Equus_caballus
ENSLACG00000011172	ptcd1	89	44.962	ENSELUG00000016517	ptcd1	88	44.511	Esox_lucius
ENSLACG00000011172	ptcd1	90	55.453	ENSFCAG00000015069	-	90	55.146	Felis_catus
ENSLACG00000011172	ptcd1	85	61.426	ENSFALG00000013803	-	94	58.050	Ficedula_albicollis
ENSLACG00000011172	ptcd1	84	57.912	ENSFDAG00000006393	-	86	57.624	Fukomys_damarensis
ENSLACG00000011172	ptcd1	73	49.712	ENSFHEG00000012491	ptcd1	87	49.712	Fundulus_heteroclitus
ENSLACG00000011172	ptcd1	81	49.228	ENSGMOG00000007639	ptcd1	92	49.228	Gadus_morhua
ENSLACG00000011172	ptcd1	84	60.995	ENSGALG00000004711	-	87	60.952	Gallus_gallus
ENSLACG00000011172	ptcd1	82	50.169	ENSGAFG00000013175	ptcd1	85	49.342	Gambusia_affinis
ENSLACG00000011172	ptcd1	84	50.246	ENSGACG00000016607	ptcd1	90	50.082	Gasterosteus_aculeatus
ENSLACG00000011172	ptcd1	85	59.211	ENSGAGG00000021832	-	91	59.211	Gopherus_agassizii
ENSLACG00000011172	ptcd1	86	58.240	ENSGGOG00000015123	-	88	57.945	Gorilla_gorilla
ENSLACG00000011172	ptcd1	82	49.578	ENSHBUG00000018275	ptcd1	80	49.578	Haplochromis_burtoni
ENSLACG00000011172	ptcd1	83	59.667	ENSHGLG00000017621	-	85	59.046	Heterocephalus_glaber_female
ENSLACG00000011172	ptcd1	83	59.667	ENSHGLG00100007218	-	85	59.046	Heterocephalus_glaber_male
ENSLACG00000011172	ptcd1	82	47.938	ENSHCOG00000010784	ptcd1	82	48.282	Hippocampus_comes
ENSLACG00000011172	ptcd1	84	60.299	ENSSTOG00000001682	-	85	60.165	Ictidomys_tridecemlineatus
ENSLACG00000011172	ptcd1	85	58.671	ENSJJAG00000000319	Ptcd1	92	56.146	Jaculus_jaculus
ENSLACG00000011172	ptcd1	82	48.727	ENSKMAG00000008708	ptcd1	81	48.727	Kryptolebias_marmoratus
ENSLACG00000011172	ptcd1	82	48.731	ENSLBEG00000008061	ptcd1	80	49.069	Labrus_bergylta
ENSLACG00000011172	ptcd1	98	54.781	ENSLOCG00000004833	ptcd1	95	58.785	Lepisosteus_oculatus
ENSLACG00000011172	ptcd1	86	58.786	ENSLAFG00000002588	-	87	58.307	Loxodonta_africana
ENSLACG00000011172	ptcd1	86	58.427	ENSMFAG00000041324	-	87	58.427	Macaca_fascicularis
ENSLACG00000011172	ptcd1	86	58.587	ENSMMUG00000030408	-	87	58.587	Macaca_mulatta
ENSLACG00000011172	ptcd1	86	58.587	ENSMNEG00000043786	-	87	58.587	Macaca_nemestrina
ENSLACG00000011172	ptcd1	86	42.926	ENSMLEG00000031179	-	85	44.750	Mandrillus_leucophaeus
ENSLACG00000011172	ptcd1	83	51.261	ENSMAMG00000007623	ptcd1	80	50.924	Mastacembelus_armatus
ENSLACG00000011172	ptcd1	82	49.410	ENSMZEG00005012722	ptcd1	80	49.410	Maylandia_zebra
ENSLACG00000011172	ptcd1	84	61.990	ENSMGAG00000004211	-	80	61.990	Meleagris_gallopavo
ENSLACG00000011172	ptcd1	83	57.877	ENSMICG00000017428	-	88	56.625	Microcebus_murinus
ENSLACG00000011172	ptcd1	82	50.600	ENSMMOG00000020243	ptcd1	88	50.862	Mola_mola
ENSLACG00000011172	ptcd1	88	55.657	ENSMODG00000001350	-	88	55.436	Monodelphis_domestica
ENSLACG00000011172	ptcd1	82	50.169	ENSMALG00000018442	ptcd1	80	49.661	Monopterus_albus
ENSLACG00000011172	ptcd1	85	56.260	MGP_CAROLIEiJ_G0028011	Ptcd1	87	56.260	Mus_caroli
ENSLACG00000011172	ptcd1	85	57.166	ENSMUSG00000029624	Ptcd1	87	57.166	Mus_musculus
ENSLACG00000011172	ptcd1	86	56.796	MGP_PahariEiJ_G0024580	Ptcd1	87	56.796	Mus_pahari
ENSLACG00000011172	ptcd1	85	56.678	MGP_SPRETEiJ_G0029012	Ptcd1	87	56.678	Mus_spretus
ENSLACG00000011172	ptcd1	86	56.410	ENSMPUG00000016518	-	88	56.583	Mustela_putorius_furo
ENSLACG00000011172	ptcd1	85	57.818	ENSMLUG00000010994	-	83	56.735	Myotis_lucifugus
ENSLACG00000011172	ptcd1	83	50.000	ENSNBRG00000010079	ptcd1	85	50.000	Neolamprologus_brichardi
ENSLACG00000011172	ptcd1	75	59.926	ENSNLEG00000011060	-	90	59.926	Nomascus_leucogenys
ENSLACG00000011172	ptcd1	85	59.350	ENSMEUG00000006930	-	87	58.900	Notamacropus_eugenii
ENSLACG00000011172	ptcd1	76	57.031	ENSOPRG00000013647	-	77	55.469	Ochotona_princeps
ENSLACG00000011172	ptcd1	82	48.311	ENSONIG00000003168	ptcd1	94	48.311	Oreochromis_niloticus
ENSLACG00000011172	ptcd1	78	55.379	ENSOANG00000007728	-	76	53.356	Ornithorhynchus_anatinus
ENSLACG00000011172	ptcd1	85	57.792	ENSOCUG00000010584	-	87	56.714	Oryctolagus_cuniculus
ENSLACG00000011172	ptcd1	84	49.000	ENSORLG00000009275	ptcd1	86	49.000	Oryzias_latipes
ENSLACG00000011172	ptcd1	84	48.667	ENSORLG00020000988	ptcd1	86	48.667	Oryzias_latipes_hni
ENSLACG00000011172	ptcd1	84	48.500	ENSORLG00015010557	ptcd1	86	48.500	Oryzias_latipes_hsok
ENSLACG00000011172	ptcd1	86	49.342	ENSOMEG00000020627	ptcd1	89	49.342	Oryzias_melastigma
ENSLACG00000011172	ptcd1	84	58.049	ENSOGAG00000010877	-	92	54.627	Otolemur_garnettii
ENSLACG00000011172	ptcd1	86	56.000	ENSOARG00000018676	-	87	55.200	Ovis_aries
ENSLACG00000011172	ptcd1	86	58.333	ENSPPAG00000036024	-	87	58.039	Pan_paniscus
ENSLACG00000011172	ptcd1	90	56.355	ENSPPRG00000003478	-	91	56.049	Panthera_pardus
ENSLACG00000011172	ptcd1	86	58.494	ENSPTRG00000019452	-	87	58.199	Pan_troglodytes
ENSLACG00000011172	ptcd1	86	58.427	ENSPANG00000016730	-	87	58.427	Papio_anubis
ENSLACG00000011172	ptcd1	84	56.833	ENSPKIG00000014215	ptcd1	87	56.427	Paramormyrops_kingsleyae
ENSLACG00000011172	ptcd1	83	61.630	ENSPSIG00000011184	-	99	61.630	Pelodiscus_sinensis
ENSLACG00000011172	ptcd1	73	41.667	ENSPMAG00000009667	ptcd1	100	41.667	Petromyzon_marinus
ENSLACG00000011172	ptcd1	86	58.307	ENSPCIG00000024778	-	87	56.703	Phascolarctos_cinereus
ENSLACG00000011172	ptcd1	82	49.239	ENSPFOG00000004458	ptcd1	84	49.261	Poecilia_formosa
ENSLACG00000011172	ptcd1	82	49.239	ENSPLAG00000011051	ptcd1	84	49.261	Poecilia_latipinna
ENSLACG00000011172	ptcd1	82	49.915	ENSPMEG00000020547	ptcd1	84	49.261	Poecilia_mexicana
ENSLACG00000011172	ptcd1	81	50.514	ENSPREG00000000059	ptcd1	82	50.514	Poecilia_reticulata
ENSLACG00000011172	ptcd1	86	58.065	ENSPPYG00000017377	-	93	57.945	Pongo_abelii
ENSLACG00000011172	ptcd1	76	60.833	ENSPCAG00000001852	-	84	59.167	Procavia_capensis
ENSLACG00000011172	ptcd1	83	58.609	ENSPCOG00000018596	-	87	57.903	Propithecus_coquereli
ENSLACG00000011172	ptcd1	56	69.000	ENSPVAG00000007529	-	61	69.000	Pteropus_vampyrus
ENSLACG00000011172	ptcd1	82	50.254	ENSPNYG00000019993	ptcd1	80	50.254	Pundamilia_nyererei
ENSLACG00000011172	ptcd1	85	52.683	ENSPNAG00000014931	ptcd1	92	50.760	Pygocentrus_nattereri
ENSLACG00000011172	ptcd1	83	59.136	ENSRNOG00000000987	Ptcd1	87	58.621	Rattus_norvegicus
ENSLACG00000011172	ptcd1	86	58.909	ENSRBIG00000043393	-	87	58.909	Rhinopithecus_bieti
ENSLACG00000011172	ptcd1	86	58.909	ENSRROG00000036420	-	87	58.909	Rhinopithecus_roxellana
ENSLACG00000011172	ptcd1	84	58.775	ENSSBOG00000024114	-	88	57.878	Saimiri_boliviensis_boliviensis
ENSLACG00000011172	ptcd1	85	56.078	ENSSHAG00000011376	-	92	56.078	Sarcophilus_harrisii
ENSLACG00000011172	ptcd1	90	56.222	ENSSFOG00015007909	ptcd1	89	55.838	Scleropages_formosus
ENSLACG00000011172	ptcd1	82	48.644	ENSSMAG00000000218	ptcd1	94	47.720	Scophthalmus_maximus
ENSLACG00000011172	ptcd1	82	49.746	ENSSDUG00000015671	ptcd1	84	49.408	Seriola_dumerili
ENSLACG00000011172	ptcd1	84	48.849	ENSSLDG00000014261	ptcd1	85	48.520	Seriola_lalandi_dorsalis
ENSLACG00000011172	ptcd1	89	59.939	ENSSPUG00000003540	-	88	59.939	Sphenodon_punctatus
ENSLACG00000011172	ptcd1	82	50.253	ENSSPAG00000011049	ptcd1	80	50.927	Stegastes_partitus
ENSLACG00000011172	ptcd1	85	57.536	ENSSSCG00000007622	-	98	54.505	Sus_scrofa
ENSLACG00000011172	ptcd1	85	63.062	ENSTGUG00000007563	-	98	63.394	Taeniopygia_guttata
ENSLACG00000011172	ptcd1	82	50.845	ENSTRUG00000013471	ptcd1	79	50.845	Takifugu_rubripes
ENSLACG00000011172	ptcd1	82	50.085	ENSTNIG00000008271	ptcd1	83	50.085	Tetraodon_nigroviridis
ENSLACG00000011172	ptcd1	86	56.661	ENSTBEG00000011021	-	87	56.340	Tupaia_belangeri
ENSLACG00000011172	ptcd1	84	57.964	ENSTTRG00000003006	-	86	57.635	Tursiops_truncatus
ENSLACG00000011172	ptcd1	88	55.906	ENSUAMG00000008049	-	88	56.220	Ursus_americanus
ENSLACG00000011172	ptcd1	85	58.132	ENSVVUG00000008836	-	87	58.132	Vulpes_vulpes
ENSLACG00000011172	ptcd1	85	57.401	ENSXETG00000009891	ptcd1	89	56.800	Xenopus_tropicalis
ENSLACG00000011172	ptcd1	82	50.170	ENSXMAG00000015540	ptcd1	84	49.340	Xiphophorus_maculatus