EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000011459 (Gene tree)
Gene ID: 102356228
Gene Symbol: SNRPB
Alias: COD|SNRPB1|Sm-B/B'|SmB/SmB'|snRNP-B
Full Name: small nuclear ribonucleoprotein polypeptides B and B1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 10221 bases
Position: chrJH127459.1:603910-614130
Accession: 102356228
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000013006	LSM	PF01423.22	5.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000013101	SNRPB-201	1309	XM_006003138	ENSLACP00000013006	240 (aa)	XP_006003200	H3ATN5

Gene Model

Click here to download ENSLACG00000011459's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000011459's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000011459	SNRPB	92	93.213	ENSG00000125835	SNRPB	96	93.213	Homo_sapiens
ENSLACG00000011459	SNRPB	75	93.923	ENSAPOG00000019606	snrpb	61	94.536	Acanthochromis_polyacanthus
ENSLACG00000011459	SNRPB	92	93.182	ENSAMEG00000011353	SNRPB	91	93.182	Ailuropoda_melanoleuca
ENSLACG00000011459	SNRPB	73	93.143	ENSACIG00000014480	snrpb	77	94.350	Amphilophus_citrinellus
ENSLACG00000011459	SNRPB	75	93.923	ENSAOCG00000006876	snrpb	75	94.536	Amphiprion_ocellaris
ENSLACG00000011459	SNRPB	75	93.923	ENSAPEG00000021585	snrpb	77	94.536	Amphiprion_percula
ENSLACG00000011459	SNRPB	75	93.370	ENSATEG00000009836	snrpb	75	93.989	Anabas_testudineus
ENSLACG00000011459	SNRPB	89	94.836	ENSACAG00000002053	SNRPB	92	94.836	Anolis_carolinensis
ENSLACG00000011459	SNRPB	96	86.147	ENSANAG00000036271	-	76	86.243	Aotus_nancymaae
ENSLACG00000011459	SNRPB	92	93.213	ENSANAG00000024443	-	96	93.213	Aotus_nancymaae
ENSLACG00000011459	SNRPB	75	93.923	ENSACLG00000014707	snrpb	75	94.536	Astatotilapia_calliptera
ENSLACG00000011459	SNRPB	76	92.896	ENSAMXG00000029434	snrpb	76	93.443	Astyanax_mexicanus
ENSLACG00000011459	SNRPB	92	92.760	ENSBTAG00000001038	SNRPB	96	92.760	Bos_taurus
ENSLACG00000011459	SNRPB	89	85.047	ENSCJAG00000023097	-	79	85.185	Callithrix_jacchus
ENSLACG00000011459	SNRPB	92	93.213	ENSCJAG00000020971	-	96	93.213	Callithrix_jacchus
ENSLACG00000011459	SNRPB	78	83.158	ENSCAFG00000031109	-	79	81.053	Canis_familiaris
ENSLACG00000011459	SNRPB	92	93.213	ENSCAFG00000006693	-	96	93.213	Canis_familiaris
ENSLACG00000011459	SNRPB	92	93.213	ENSCAFG00020016981	-	92	93.213	Canis_lupus_dingo
ENSLACG00000011459	SNRPB	92	92.760	ENSCHIG00000025449	-	96	92.760	Capra_hircus
ENSLACG00000011459	SNRPB	97	72.414	ENSTSYG00000032303	-	66	70.492	Carlito_syrichta
ENSLACG00000011459	SNRPB	92	93.213	ENSTSYG00000014498	-	96	93.213	Carlito_syrichta
ENSLACG00000011459	SNRPB	92	93.182	ENSCAPG00000012669	SNRPB	96	93.182	Cavia_aperea
ENSLACG00000011459	SNRPB	92	93.213	ENSCPOG00000039408	SNRPB	96	93.213	Cavia_porcellus
ENSLACG00000011459	SNRPB	53	84.252	ENSCCAG00000035140	-	89	86.275	Cebus_capucinus
ENSLACG00000011459	SNRPB	92	93.213	ENSCCAG00000026002	SNRPB	96	93.213	Cebus_capucinus
ENSLACG00000011459	SNRPB	92	93.213	ENSCATG00000030230	SNRPB	96	93.213	Cercocebus_atys
ENSLACG00000011459	SNRPB	92	93.213	ENSCLAG00000012442	SNRPB	93	93.213	Chinchilla_lanigera
ENSLACG00000011459	SNRPB	92	93.213	ENSCSAG00000010840	SNRPB	96	93.213	Chlorocebus_sabaeus
ENSLACG00000011459	SNRPB	92	95.475	ENSCPBG00000026801	SNRPB	96	95.475	Chrysemys_picta_bellii
ENSLACG00000011459	SNRPB	92	93.213	ENSCANG00000019461	SNRPB	96	93.213	Colobus_angolensis_palliatus
ENSLACG00000011459	SNRPB	92	93.213	ENSCGRG00001023046	Snrpb	96	93.213	Cricetulus_griseus_chok1gshd
ENSLACG00000011459	SNRPB	89	92.958	ENSCGRG00000010423	Snrpb	95	92.958	Cricetulus_griseus_crigri
ENSLACG00000011459	SNRPB	99	95.378	ENSCSEG00000020328	snrpb	99	95.378	Cynoglossus_semilaevis
ENSLACG00000011459	SNRPB	70	94.048	ENSDARG00000011125	snrpb	76	94.536	Danio_rerio
ENSLACG00000011459	SNRPB	92	89.140	ENSDNOG00000007896	-	91	89.140	Dasypus_novemcinctus
ENSLACG00000011459	SNRPB	92	93.213	ENSDNOG00000015545	-	92	93.213	Dasypus_novemcinctus
ENSLACG00000011459	SNRPB	90	92.558	ENSDORG00000029558	Snrpb	93	92.558	Dipodomys_ordii
ENSLACG00000011459	SNRPB	62	69.128	FBgn0262601	SmB	74	69.128	Drosophila_melanogaster
ENSLACG00000011459	SNRPB	76	73.770	ENSETEG00000006830	SNRPB	80	73.770	Echinops_telfairi
ENSLACG00000011459	SNRPB	75	78.495	ENSEBUG00000007467	SNRPB	75	78.495	Eptatretus_burgeri
ENSLACG00000011459	SNRPB	92	92.760	ENSEASG00005012991	SNRPB	96	92.760	Equus_asinus_asinus
ENSLACG00000011459	SNRPB	92	93.213	ENSECAG00000011944	SNRPB	96	93.213	Equus_caballus
ENSLACG00000011459	SNRPB	100	85.433	ENSEEUG00000015568	SNRPB	78	93.213	Erinaceus_europaeus
ENSLACG00000011459	SNRPB	60	97.931	ENSELUG00000014564	snrpb	77	92.655	Esox_lucius
ENSLACG00000011459	SNRPB	92	93.213	ENSFCAG00000034090	-	96	93.213	Felis_catus
ENSLACG00000011459	SNRPB	89	94.836	ENSFALG00000004866	SNRPB	92	94.836	Ficedula_albicollis
ENSLACG00000011459	SNRPB	92	93.213	ENSFDAG00000009937	SNRPB	96	93.213	Fukomys_damarensis
ENSLACG00000011459	SNRPB	92	95.023	ENSGALG00000035421	SNRPN	92	95.023	Gallus_gallus
ENSLACG00000011459	SNRPB	72	93.605	ENSGAFG00000019558	snrpb	78	92.857	Gambusia_affinis
ENSLACG00000011459	SNRPB	99	94.958	ENSGACG00000003262	snrpb	99	94.958	Gasterosteus_aculeatus
ENSLACG00000011459	SNRPB	92	95.475	ENSGAGG00000001308	SNRPB	92	95.475	Gopherus_agassizii
ENSLACG00000011459	SNRPB	92	93.213	ENSGGOG00000016138	SNRPB	96	93.213	Gorilla_gorilla
ENSLACG00000011459	SNRPB	75	93.923	ENSHBUG00000008369	snrpb	75	94.536	Haplochromis_burtoni
ENSLACG00000011459	SNRPB	63	84.667	ENSHGLG00000016505	-	86	79.121	Heterocephalus_glaber_female
ENSLACG00000011459	SNRPB	92	93.213	ENSHGLG00000016241	-	96	93.213	Heterocephalus_glaber_female
ENSLACG00000011459	SNRPB	63	84.667	ENSHGLG00100004178	-	86	79.121	Heterocephalus_glaber_male
ENSLACG00000011459	SNRPB	92	93.213	ENSHGLG00100012877	-	96	93.213	Heterocephalus_glaber_male
ENSLACG00000011459	SNRPB	99	94.958	ENSHCOG00000014888	snrpb	99	94.958	Hippocampus_comes
ENSLACG00000011459	SNRPB	100	95.417	ENSIPUG00000024569	SNRPB	100	95.417	Ictalurus_punctatus
ENSLACG00000011459	SNRPB	92	91.403	ENSSTOG00000033664	-	92	91.403	Ictidomys_tridecemlineatus
ENSLACG00000011459	SNRPB	92	93.213	ENSJJAG00000024170	Snrpb	96	93.213	Jaculus_jaculus
ENSLACG00000011459	SNRPB	72	94.798	ENSKMAG00000014494	snrpb	74	93.989	Kryptolebias_marmoratus
ENSLACG00000011459	SNRPB	99	95.378	ENSLBEG00000005678	snrpb	99	95.378	Labrus_bergylta
ENSLACG00000011459	SNRPB	100	95.833	ENSLOCG00000002687	snrpb	100	95.833	Lepisosteus_oculatus
ENSLACG00000011459	SNRPB	92	89.091	ENSLAFG00000017588	SNRPB	95	89.091	Loxodonta_africana
ENSLACG00000011459	SNRPB	92	93.213	ENSMFAG00000038756	SNRPB	96	93.213	Macaca_fascicularis
ENSLACG00000011459	SNRPB	92	93.213	ENSMMUG00000010050	SNRPB	96	93.213	Macaca_mulatta
ENSLACG00000011459	SNRPB	92	93.213	ENSMNEG00000027954	SNRPB	96	93.213	Macaca_nemestrina
ENSLACG00000011459	SNRPB	92	93.213	ENSMLEG00000022346	SNRPB	96	93.213	Mandrillus_leucophaeus
ENSLACG00000011459	SNRPB	75	93.889	ENSMAMG00000009294	snrpb	73	94.505	Mastacembelus_armatus
ENSLACG00000011459	SNRPB	75	93.923	ENSMZEG00005011856	snrpb	75	94.536	Maylandia_zebra
ENSLACG00000011459	SNRPB	99	76.891	ENSMICG00000015983	-	87	83.069	Microcebus_murinus
ENSLACG00000011459	SNRPB	92	92.760	ENSMICG00000016519	SNRPB	96	92.760	Microcebus_murinus
ENSLACG00000011459	SNRPB	58	78.986	ENSMOCG00000021362	-	76	74.863	Microtus_ochrogaster
ENSLACG00000011459	SNRPB	92	92.760	ENSMOCG00000002892	-	96	92.760	Microtus_ochrogaster
ENSLACG00000011459	SNRPB	95	95.175	ENSMMOG00000013226	snrpb	97	95.175	Mola_mola
ENSLACG00000011459	SNRPB	75	93.370	ENSMALG00000020839	snrpb	61	93.989	Monopterus_albus
ENSLACG00000011459	SNRPB	92	93.213	MGP_CAROLIEiJ_G0024293	Snrpb	96	93.213	Mus_caroli
ENSLACG00000011459	SNRPB	92	93.213	ENSMUSG00000027404	Snrpb	96	93.213	Mus_musculus
ENSLACG00000011459	SNRPB	92	93.213	MGP_PahariEiJ_G0025738	Snrpb	96	93.213	Mus_pahari
ENSLACG00000011459	SNRPB	92	93.213	MGP_SPRETEiJ_G0025213	Snrpb	96	93.213	Mus_spretus
ENSLACG00000011459	SNRPB	92	93.213	ENSMPUG00000009283	SNRPB	96	93.213	Mustela_putorius_furo
ENSLACG00000011459	SNRPB	92	90.498	ENSMLUG00000016951	SNRPB	92	90.498	Myotis_lucifugus
ENSLACG00000011459	SNRPB	92	93.213	ENSNGAG00000012051	Snrpb	96	93.213	Nannospalax_galili
ENSLACG00000011459	SNRPB	75	91.160	ENSNBRG00000006353	snrpb	69	91.803	Neolamprologus_brichardi
ENSLACG00000011459	SNRPB	92	93.213	ENSNLEG00000029067	SNRPB	93	93.182	Nomascus_leucogenys
ENSLACG00000011459	SNRPB	92	92.727	ENSMEUG00000015625	SNRPB	98	92.727	Notamacropus_eugenii
ENSLACG00000011459	SNRPB	79	88.360	ENSODEG00000016060	-	79	88.360	Octodon_degus
ENSLACG00000011459	SNRPB	92	93.213	ENSODEG00000004305	-	96	93.213	Octodon_degus
ENSLACG00000011459	SNRPB	75	93.923	ENSONIG00000000248	snrpb	75	94.536	Oreochromis_niloticus
ENSLACG00000011459	SNRPB	89	65.728	ENSOCUG00000026813	-	78	64.641	Oryctolagus_cuniculus
ENSLACG00000011459	SNRPB	75	86.592	ENSOCUG00000022423	-	92	86.592	Oryctolagus_cuniculus
ENSLACG00000011459	SNRPB	95	90.308	ENSOCUG00000028215	-	95	90.308	Oryctolagus_cuniculus
ENSLACG00000011459	SNRPB	92	92.760	ENSOCUG00000014042	-	92	92.760	Oryctolagus_cuniculus
ENSLACG00000011459	SNRPB	90	87.907	ENSOCUG00000021456	-	78	88.889	Oryctolagus_cuniculus
ENSLACG00000011459	SNRPB	75	93.370	ENSORLG00000021862	snrpb	75	93.989	Oryzias_latipes
ENSLACG00000011459	SNRPB	92	93.213	ENSOGAG00000016149	SNRPB	92	93.213	Otolemur_garnettii
ENSLACG00000011459	SNRPB	92	92.760	ENSOARG00000006740	SNRPB	96	92.760	Ovis_aries
ENSLACG00000011459	SNRPB	92	93.213	ENSPPAG00000036314	SNRPB	96	93.213	Pan_paniscus
ENSLACG00000011459	SNRPB	92	93.213	ENSPPRG00000003233	-	96	93.213	Panthera_pardus
ENSLACG00000011459	SNRPB	92	93.182	ENSPTIG00000007468	SNRPB	95	93.182	Panthera_tigris_altaica
ENSLACG00000011459	SNRPB	92	93.213	ENSPTRG00000013176	SNRPB	96	93.213	Pan_troglodytes
ENSLACG00000011459	SNRPB	92	93.213	ENSPANG00000020362	SNRPB	92	93.213	Papio_anubis
ENSLACG00000011459	SNRPB	70	93.452	ENSPKIG00000002865	snrpb	76	93.443	Paramormyrops_kingsleyae
ENSLACG00000011459	SNRPB	92	95.455	ENSPSIG00000014125	SNRPB	91	95.455	Pelodiscus_sinensis
ENSLACG00000011459	SNRPB	74	91.573	ENSPMGG00000016349	snrpb	75	92.135	Periophthalmus_magnuspinnatus
ENSLACG00000011459	SNRPB	92	93.213	ENSPEMG00000007948	Snrpb	96	93.213	Peromyscus_maniculatus_bairdii
ENSLACG00000011459	SNRPB	92	92.727	ENSPCIG00000004694	SNRPB	91	92.727	Phascolarctos_cinereus
ENSLACG00000011459	SNRPB	62	97.315	ENSPFOG00000011802	snrpb	63	97.315	Poecilia_formosa
ENSLACG00000011459	SNRPB	65	87.742	ENSPLAG00000014130	snrpb	59	98.519	Poecilia_latipinna
ENSLACG00000011459	SNRPB	56	98.519	ENSPREG00000015515	snrpb	62	98.519	Poecilia_reticulata
ENSLACG00000011459	SNRPB	92	93.213	ENSPPYG00000010841	SNRPB	96	93.213	Pongo_abelii
ENSLACG00000011459	SNRPB	92	93.213	ENSPCOG00000013686	SNRPB	96	93.213	Propithecus_coquereli
ENSLACG00000011459	SNRPB	92	92.308	ENSPVAG00000017013	SNRPB	77	92.308	Pteropus_vampyrus
ENSLACG00000011459	SNRPB	75	93.923	ENSPNYG00000014788	snrpb	75	94.536	Pundamilia_nyererei
ENSLACG00000011459	SNRPB	76	92.896	ENSPNAG00000016126	snrpb	76	93.989	Pygocentrus_nattereri
ENSLACG00000011459	SNRPB	92	93.213	ENSRNOG00000006961	Snrpb	96	93.213	Rattus_norvegicus
ENSLACG00000011459	SNRPB	70	93.452	ENSRBIG00000040505	SNRPB	79	92.350	Rhinopithecus_bieti
ENSLACG00000011459	SNRPB	92	93.213	ENSRROG00000036094	SNRPB	96	93.213	Rhinopithecus_roxellana
ENSLACG00000011459	SNRPB	92	93.213	ENSSBOG00000027310	SNRPB	96	93.213	Saimiri_boliviensis_boliviensis
ENSLACG00000011459	SNRPB	92	93.665	ENSSHAG00000010394	SNRPB	92	93.665	Sarcophilus_harrisii
ENSLACG00000011459	SNRPB	70	93.452	ENSSFOG00015002870	snrpb	76	93.443	Scleropages_formosus
ENSLACG00000011459	SNRPB	99	94.958	ENSSMAG00000006766	snrpb	99	94.958	Scophthalmus_maximus
ENSLACG00000011459	SNRPB	75	93.923	ENSSDUG00000018539	snrpb	75	94.536	Seriola_dumerili
ENSLACG00000011459	SNRPB	75	93.923	ENSSLDG00000022391	snrpb	75	94.536	Seriola_lalandi_dorsalis
ENSLACG00000011459	SNRPB	92	81.364	ENSSARG00000003084	SNRPB	94	81.364	Sorex_araneus
ENSLACG00000011459	SNRPB	92	95.455	ENSSPUG00000015659	SNRPB	92	95.455	Sphenodon_punctatus
ENSLACG00000011459	SNRPB	75	93.923	ENSSPAG00000021992	snrpb	75	94.536	Stegastes_partitus
ENSLACG00000011459	SNRPB	88	73.333	ENSSSCG00000011966	-	77	69.945	Sus_scrofa
ENSLACG00000011459	SNRPB	92	92.760	ENSSSCG00000040857	-	96	92.760	Sus_scrofa
ENSLACG00000011459	SNRPB	95	94.760	ENSTRUG00000023094	snrpb	99	94.760	Takifugu_rubripes
ENSLACG00000011459	SNRPB	99	94.958	ENSTNIG00000002991	snrpb	99	94.958	Tetraodon_nigroviridis
ENSLACG00000011459	SNRPB	75	92.778	ENSUAMG00000005984	-	88	92.896	Ursus_americanus
ENSLACG00000011459	SNRPB	92	92.760	ENSVVUG00000025654	-	92	92.760	Vulpes_vulpes
ENSLACG00000011459	SNRPB	100	71.250	ENSVVUG00000010086	-	85	75.510	Vulpes_vulpes
ENSLACG00000011459	SNRPB	92	94.570	ENSXETG00000027266	snrpb	93	94.570	Xenopus_tropicalis
ENSLACG00000011459	SNRPB	78	75.532	ENSXMAG00000028767	snrpb	58	98.519	Xiphophorus_maculatus