EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000011540 (Gene tree)
Gene ID: 102352244
Gene Symbol: ern2
Alias: si:ch211-14k19.11
Full Name: endoplasmic reticulum to nucleus signaling 2
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 65509 bases
Position: chrJH127789.1:611573-677081
Accession: 102352244
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000023642	Ribonuc_2-5A	PF06479.12	8.6e-40	1	1
ENSLACP00000013101	Ribonuc_2-5A	PF06479.12	8.9e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000013197	-	6004	XM_006005669	ENSLACP00000013101	974 (aa)	XP_006005731	H3ATY0
ENSLACT00000025482	-	5288	-	ENSLACP00000023642	834 (aa)	-	M3XLN6

Gene Model

Click here to download ENSLACG00000011540's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm04140	Autophagy - animal	KEGG
lcm04141	Protein processing in endoplasmic reticulum	KEGG
lcm04210	Apoptosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000011540's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000011540	ern2	97	62.994	ENSAPOG00000002325	ern2	98	61.585	Acanthochromis_polyacanthus
ENSLACG00000011540	ern2	99	59.356	ENSACIG00000015500	ern2	85	56.829	Amphilophus_citrinellus
ENSLACG00000011540	ern2	97	63.351	ENSAOCG00000001933	ern2	98	61.585	Amphiprion_ocellaris
ENSLACG00000011540	ern2	99	61.934	ENSATEG00000008597	ern2	98	61.373	Anabas_testudineus
ENSLACG00000011540	ern2	97	63.323	ENSACLG00000000966	ern2	98	61.663	Astatotilapia_calliptera
ENSLACG00000011540	ern2	87	76.617	ENSAMXG00000018368	ern2	97	76.427	Astyanax_mexicanus
ENSLACG00000011540	ern2	99	59.714	ENSCSEG00000020936	ern2	97	60.748	Cynoglossus_semilaevis
ENSLACG00000011540	ern2	97	63.435	ENSCVAG00000015538	ern2	99	60.606	Cyprinodon_variegatus
ENSLACG00000011540	ern2	88	76.601	ENSDARG00000058475	ern2	95	76.413	Danio_rerio
ENSLACG00000011540	ern2	87	70.707	ENSELUG00000009350	ern2	89	70.529	Esox_lucius
ENSLACG00000011540	ern2	97	63.302	ENSFHEG00000002578	ern2	96	62.815	Fundulus_heteroclitus
ENSLACG00000011540	ern2	75	72.959	ENSGMOG00000006029	ern2	83	72.959	Gadus_morhua
ENSLACG00000011540	ern2	98	60.663	ENSGACG00000016726	ern2	95	59.939	Gasterosteus_aculeatus
ENSLACG00000011540	ern2	97	63.218	ENSHBUG00000019242	ern2	99	60.894	Haplochromis_burtoni
ENSLACG00000011540	ern2	87	66.019	ENSHCOG00000020503	ern2	94	66.019	Hippocampus_comes
ENSLACG00000011540	ern2	97	63.351	ENSLBEG00000005440	ern2	96	63.389	Labrus_bergylta
ENSLACG00000011540	ern2	97	62.487	ENSMAMG00000008619	ern2	99	61.398	Mastacembelus_armatus
ENSLACG00000011540	ern2	97	63.323	ENSMZEG00005011884	ern2	98	61.663	Maylandia_zebra
ENSLACG00000011540	ern2	97	61.450	ENSMMOG00000003643	ern2	89	74.623	Mola_mola
ENSLACG00000011540	ern2	97	62.238	ENSMALG00000002568	ern2	98	60.467	Monopterus_albus
ENSLACG00000011540	ern2	97	62.579	ENSONIG00000003276	ern2	97	62.290	Oreochromis_niloticus
ENSLACG00000011540	ern2	97	61.163	ENSORLG00000008924	ERN2	99	60.619	Oryzias_latipes
ENSLACG00000011540	ern2	97	61.307	ENSORLG00020012672	ern2	97	61.595	Oryzias_latipes_hni
ENSLACG00000011540	ern2	97	60.991	ENSORLG00015011995	ern2	97	60.874	Oryzias_latipes_hsok
ENSLACG00000011540	ern2	97	62.434	ENSOMEG00000022267	ern2	97	61.935	Oryzias_melastigma
ENSLACG00000011540	ern2	99	64.790	ENSPKIG00000013181	ern2	94	66.036	Paramormyrops_kingsleyae
ENSLACG00000011540	ern2	75	75.063	ENSPMGG00000016482	ern2	80	75.063	Periophthalmus_magnuspinnatus
ENSLACG00000011540	ern2	99	59.953	ENSPFOG00000006600	-	99	59.978	Poecilia_formosa
ENSLACG00000011540	ern2	79	59.911	ENSPLAG00000018226	-	95	73.508	Poecilia_latipinna
ENSLACG00000011540	ern2	77	60.570	ENSPMEG00000004696	-	99	59.299	Poecilia_mexicana
ENSLACG00000011540	ern2	97	63.218	ENSPNYG00000014961	ern2	98	61.562	Pundamilia_nyererei
ENSLACG00000011540	ern2	97	63.323	ENSPNAG00000014531	ern2	99	62.948	Pygocentrus_nattereri
ENSLACG00000011540	ern2	99	61.283	ENSSMAG00000021268	ern2	99	61.748	Scophthalmus_maximus
ENSLACG00000011540	ern2	97	63.665	ENSSDUG00000016726	ern2	98	61.963	Seriola_dumerili
ENSLACG00000011540	ern2	97	62.932	ENSSLDG00000022830	ern2	98	61.617	Seriola_lalandi_dorsalis
ENSLACG00000011540	ern2	78	67.588	ENSSPAG00000013487	ern2	90	67.419	Stegastes_partitus
ENSLACG00000011540	ern2	99	62.679	ENSXETG00000010337	ern2	99	60.998	Xenopus_tropicalis
ENSLACG00000011540	ern2	78	75.315	ENSXCOG00000009393	ern2	88	75.126	Xiphophorus_couchianus
ENSLACG00000011540	ern2	97	62.500	ENSXMAG00000006362	-	98	61.026	Xiphophorus_maculatus