EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000011557 (Gene tree)
Gene ID: 102358164
Gene Symbol: zgc:101559
Alias: -
Full Name: ras-related protein Rab-33B-like
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 6050 bases
Position: chrJH127493.1:613372-619421
Accession: 102358164
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000013123	MMR_HSR1	PF01926.23	3.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000013219	-	696	XM_006003494	ENSLACP00000013123	231 (aa)	XP_006003556	H3AU02

Gene Model

Click here to download ENSLACG00000011557's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm04140	Autophagy - animal	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000011557's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000011557	zgc:101559	95	36.036	ENSLACG00000004663	RAB5A	99	36.036
ENSLACG00000011557	zgc:101559	66	32.484	ENSLACG00000004025	RAB23	67	33.728
ENSLACG00000011557	zgc:101559	74	34.503	ENSLACG00000010042	-	71	36.242
ENSLACG00000011557	zgc:101559	75	36.994	ENSLACG00000012184	RAB11A	80	36.994
ENSLACG00000011557	zgc:101559	71	39.286	ENSLACG00000015770	RAB7A	79	39.286
ENSLACG00000011557	zgc:101559	65	34.228	ENSLACG00000016958	-	71	34.228
ENSLACG00000011557	zgc:101559	77	42.373	ENSLACG00000012717	RAB1B	84	42.373
ENSLACG00000011557	zgc:101559	72	37.725	ENSLACG00000012521	RAB2A	76	37.725
ENSLACG00000011557	zgc:101559	73	39.645	ENSLACG00000011181	RAB14	76	39.645
ENSLACG00000011557	zgc:101559	73	39.286	ENSLACG00000013980	rab41	74	39.286
ENSLACG00000011557	zgc:101559	79	36.066	ENSLACG00000016857	-	83	36.066
ENSLACG00000011557	zgc:101559	64	30.065	ENSLACG00000014614	si:dkey-27j5.5	57	30.065
ENSLACG00000011557	zgc:101559	58	31.852	ENSLACG00000013122	RRAS2	72	32.653
ENSLACG00000011557	zgc:101559	79	30.481	ENSLACG00000001664	NKIRAS1	93	30.481
ENSLACG00000011557	zgc:101559	61	35.714	ENSLACG00000010885	-	89	35.714
ENSLACG00000011557	zgc:101559	72	36.047	ENSLACG00000017891	RAB9B	72	37.419
ENSLACG00000011557	zgc:101559	63	31.126	ENSLACG00000017138	RRAS	93	32.515
ENSLACG00000011557	zgc:101559	67	38.961	ENSLACG00000014446	RAB2B	92	38.961
ENSLACG00000011557	zgc:101559	58	37.410	ENSLACG00000002523	RAB29	67	37.410
ENSLACG00000011557	zgc:101559	74	44.706	ENSLACG00000006407	RAB30	81	44.706
ENSLACG00000011557	zgc:101559	67	38.961	ENSLACG00000016974	RAB11B	88	38.961
ENSLACG00000011557	zgc:101559	84	34.928	ENSLACG00000003722	rabl2	90	34.928
ENSLACG00000011557	zgc:101559	74	34.706	ENSLACG00000018427	HRAS	87	34.706
ENSLACG00000011557	zgc:101559	74	32.941	ENSLACG00000018428	NRAS	87	32.941
ENSLACG00000011557	zgc:101559	88	35.407	ENSLACG00000005168	RAB6A	94	35.407
ENSLACG00000011557	zgc:101559	70	39.157	ENSLACG00000009310	rab18a	80	39.157
ENSLACG00000011557	zgc:101559	70	37.349	ENSLACG00000011256	rab18b	80	37.349
ENSLACG00000011557	zgc:101559	74	36.628	ENSLACG00000007092	RAB22A	86	36.628
ENSLACG00000011557	zgc:101559	72	34.831	ENSLACG00000016518	-	56	34.831
ENSLACG00000011557	zgc:101559	84	36.923	ENSLACG00000012755	-	90	36.923
ENSLACG00000011557	zgc:101559	87	35.323	ENSLACG00000022111	-	96	35.323
ENSLACG00000011557	zgc:101559	86	38.647	ENSLACG00000002332	-	96	38.647
ENSLACG00000011557	zgc:101559	64	43.421	ENSLACG00000008103	-	82	43.421
ENSLACG00000011557	zgc:101559	85	33.659	ENSLACG00000011380	rab11al	93	33.659
ENSLACG00000011557	zgc:101559	66	31.373	ENSLACG00000014985	RAP2B	90	32.335
ENSLACG00000011557	zgc:101559	51	47.009	ENSLACG00000018444	RAB35	56	47.009
ENSLACG00000011557	zgc:101559	87	36.816	ENSLACG00000010461	RAB12	84	34.685
ENSLACG00000011557	zgc:101559	62	42.361	ENSLACG00000001081	RAB34	55	42.361
ENSLACG00000011557	zgc:101559	66	44.805	ENSLACG00000016074	RAB39B	72	44.805
ENSLACG00000011557	zgc:101559	86	35.749	ENSLACG00000008809	zgc:100918	97	35.749
ENSLACG00000011557	zgc:101559	77	42.938	ENSLACG00000012869	RAB1A	82	42.938
ENSLACG00000011557	zgc:101559	64	43.624	ENSLACG00000012674	si:dkey-34d22.5	70	43.624
ENSLACG00000011557	zgc:101559	70	31.325	ENSLACG00000012994	DNAJC27	60	31.325
ENSLACG00000011557	zgc:101559	74	33.529	ENSLACG00000017464	KRAS	90	33.714
ENSLACG00000011557	zgc:101559	74	35.465	ENSLACG00000011157	RAB25	79	35.465
ENSLACG00000011557	zgc:101559	52	30.000	ENSLACG00000015332	ARL5C	64	30.000
ENSLACG00000011557	zgc:101559	87	64.179	ENSLACG00000013571	RAB33B	87	64.179
ENSLACG00000011557	zgc:101559	56	33.846	ENSLACG00000018793	RAN	86	33.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000011557	zgc:101559	87	66.169	ENSAPOG00000007503	zgc:101559	86	66.169	Acanthochromis_polyacanthus
ENSLACG00000011557	zgc:101559	80	71.892	ENSACIG00000021459	zgc:101559	81	71.892	Amphilophus_citrinellus
ENSLACG00000011557	zgc:101559	87	66.169	ENSAOCG00000024675	zgc:101559	86	66.169	Amphiprion_ocellaris
ENSLACG00000011557	zgc:101559	87	66.169	ENSAPEG00000005176	zgc:101559	86	66.169	Amphiprion_percula
ENSLACG00000011557	zgc:101559	87	65.672	ENSATEG00000007761	zgc:101559	86	65.672	Anabas_testudineus
ENSLACG00000011557	zgc:101559	87	68.159	ENSACLG00000027006	zgc:101559	85	68.159	Astatotilapia_calliptera
ENSLACG00000011557	zgc:101559	87	70.647	ENSAMXG00000040460	zgc:101559	81	70.647	Astyanax_mexicanus
ENSLACG00000011557	zgc:101559	87	66.337	ENSCSEG00000006243	zgc:101559	86	66.337	Cynoglossus_semilaevis
ENSLACG00000011557	zgc:101559	87	67.327	ENSCVAG00000019227	zgc:101559	86	67.327	Cyprinodon_variegatus
ENSLACG00000011557	zgc:101559	89	66.990	ENSDARG00000003257	zgc:101559	88	66.990	Danio_rerio
ENSLACG00000011557	zgc:101559	87	68.159	ENSFHEG00000011483	zgc:101559	86	68.159	Fundulus_heteroclitus
ENSLACG00000011557	zgc:101559	77	74.302	ENSGMOG00000011665	zgc:101559	85	74.302	Gadus_morhua
ENSLACG00000011557	zgc:101559	87	67.164	ENSGAFG00000021202	zgc:101559	85	67.164	Gambusia_affinis
ENSLACG00000011557	zgc:101559	87	65.842	ENSGACG00000001725	zgc:101559	87	65.842	Gasterosteus_aculeatus
ENSLACG00000011557	zgc:101559	87	67.164	ENSHBUG00000007827	zgc:101559	86	67.164	Haplochromis_burtoni
ENSLACG00000011557	zgc:101559	77	70.621	ENSHCOG00000009133	zgc:101559	75	70.621	Hippocampus_comes
ENSLACG00000011557	zgc:101559	87	67.662	ENSIPUG00000022394	zgc:101559	87	67.662	Ictalurus_punctatus
ENSLACG00000011557	zgc:101559	87	69.802	ENSKMAG00000002862	zgc:101559	86	69.802	Kryptolebias_marmoratus
ENSLACG00000011557	zgc:101559	87	64.677	ENSLBEG00000025798	zgc:101559	86	64.677	Labrus_bergylta
ENSLACG00000011557	zgc:101559	90	74.163	ENSLOCG00000005904	zgc:101559	88	74.163	Lepisosteus_oculatus
ENSLACG00000011557	zgc:101559	87	67.164	ENSMAMG00000017431	zgc:101559	86	67.164	Mastacembelus_armatus
ENSLACG00000011557	zgc:101559	87	67.164	ENSMZEG00005021778	zgc:101559	86	67.164	Maylandia_zebra
ENSLACG00000011557	zgc:101559	86	66.332	ENSMMOG00000019779	zgc:101559	85	66.332	Mola_mola
ENSLACG00000011557	zgc:101559	87	67.164	ENSMALG00000003712	zgc:101559	86	67.164	Monopterus_albus
ENSLACG00000011557	zgc:101559	87	67.164	ENSNBRG00000002684	zgc:101559	86	67.164	Neolamprologus_brichardi
ENSLACG00000011557	zgc:101559	87	67.164	ENSONIG00000006715	-	86	67.164	Oreochromis_niloticus
ENSLACG00000011557	zgc:101559	89	66.829	ENSORLG00000030642	zgc:101559	88	66.829	Oryzias_latipes
ENSLACG00000011557	zgc:101559	87	68.500	ENSORLG00020012685	zgc:101559	85	68.500	Oryzias_latipes_hni
ENSLACG00000011557	zgc:101559	89	67.317	ENSORLG00015016047	zgc:101559	88	67.317	Oryzias_latipes_hsok
ENSLACG00000011557	zgc:101559	89	65.854	ENSOMEG00000013128	zgc:101559	88	65.854	Oryzias_melastigma
ENSLACG00000011557	zgc:101559	87	68.657	ENSPKIG00000013397	zgc:101559	84	68.657	Paramormyrops_kingsleyae
ENSLACG00000011557	zgc:101559	87	68.159	ENSPFOG00000009101	-	85	68.159	Poecilia_formosa
ENSLACG00000011557	zgc:101559	87	65.672	ENSPLAG00000020627	zgc:101559	86	65.672	Poecilia_latipinna
ENSLACG00000011557	zgc:101559	87	68.159	ENSPMEG00000010152	zgc:101559	85	68.159	Poecilia_mexicana
ENSLACG00000011557	zgc:101559	87	67.662	ENSPREG00000007017	zgc:101559	85	67.662	Poecilia_reticulata
ENSLACG00000011557	zgc:101559	87	67.164	ENSPNYG00000012922	zgc:101559	86	67.164	Pundamilia_nyererei
ENSLACG00000011557	zgc:101559	87	70.149	ENSPNAG00000017856	zgc:101559	86	70.149	Pygocentrus_nattereri
ENSLACG00000011557	zgc:101559	95	66.818	ENSSFOG00015006175	zgc:101559	93	66.818	Scleropages_formosus
ENSLACG00000011557	zgc:101559	87	63.366	ENSSMAG00000002229	zgc:101559	86	63.366	Scophthalmus_maximus
ENSLACG00000011557	zgc:101559	89	65.534	ENSSDUG00000008151	zgc:101559	88	65.534	Seriola_dumerili
ENSLACG00000011557	zgc:101559	89	65.049	ENSSLDG00000019214	zgc:101559	88	65.049	Seriola_lalandi_dorsalis
ENSLACG00000011557	zgc:101559	87	67.662	ENSSPAG00000006404	zgc:101559	86	67.662	Stegastes_partitus
ENSLACG00000011557	zgc:101559	86	67.500	ENSTRUG00000009903	zgc:101559	85	67.500	Takifugu_rubripes
ENSLACG00000011557	zgc:101559	86	65.829	ENSTNIG00000015000	zgc:101559	84	65.829	Tetraodon_nigroviridis
ENSLACG00000011557	zgc:101559	87	67.662	ENSXCOG00000018683	zgc:101559	85	67.662	Xiphophorus_couchianus
ENSLACG00000011557	zgc:101559	87	66.169	ENSXMAG00000011171	zgc:101559	86	66.169	Xiphophorus_maculatus