EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSLACG00000011907 (Gene tree)
Gene ID
102349905
Gene Symbol
PABPC4
Alias
APP-1|iPABP
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Latimeria_chalumnae
Status
putative
Strand
Minus strand
Length
29971 bases
Position
chrJH126748.1:650234-680204
Accession
102349905
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSLACP00000013523PABPPF00658.183.7e-3211
ENSLACP00000013524PABPPF00658.183.8e-3211
ENSLACP00000013523RRM_5PF13893.62.5e-0711
ENSLACP00000013524RRM_5PF13893.62.6e-0711
ENSLACP00000013523RRM_1PF00076.229.7e-9114
ENSLACP00000013523RRM_1PF00076.229.7e-9124
ENSLACP00000013523RRM_1PF00076.229.7e-9134
ENSLACP00000013523RRM_1PF00076.229.7e-9144
ENSLACP00000013524RRM_1PF00076.221e-9014
ENSLACP00000013524RRM_1PF00076.221e-9024
ENSLACP00000013524RRM_1PF00076.221e-9034
ENSLACP00000013524RRM_1PF00076.221e-9044
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSLACT00000013619PABPC4-2012286XM_005993892ENSLACP00000013523634 (aa)XP_005993954H3AV52
ENSLACT00000013620PABPC4-2021914-ENSLACP00000013524638 (aa)-H3AV53
Gene Model
Click here to download ENSLACG00000011907's gene model file
Pathways
Pathway IDPathway NameSource
lcm03013RNA transportKEGG
lcm03015mRNA surveillance pathwayKEGG
lcm03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000011907's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSLACG00000011907PABPC45743.716ENSLACG00000004436SF3B45043.716
ENSLACG00000011907PABPC49980.472ENSLACG00000004395PABPC19979.690
ENSLACG00000011907PABPC45833.553ENSLACG00000017607ELAVL19533.117
ENSLACG00000011907PABPC45238.372ENSLACG00000009779CELF25337.500
ENSLACG00000011907PABPC49969.051ENSLACG00000005762PABPC1L9968.069
ENSLACG00000011907PABPC45936.145ENSLACG00000010888ELAVL28636.145
ENSLACG00000011907PABPC45630.909ENSLACG00000009328ncl5231.387
ENSLACG00000011907PABPC45430.366ENSLACG00000014480HNRNPA06230.366
ENSLACG00000011907PABPC45439.286ENSLACG00000005541TRNAU1AP7139.286
ENSLACG00000011907PABPC45436.145ENSLACG00000016391elavl39436.145
ENSLACG00000011907PABPC47430.769ENSLACG00000011749TIAL19430.769
ENSLACG00000011907PABPC46135.238ENSLACG00000016576-5235.238
ENSLACG00000011907PABPC45834.940ENSLACG00000008316ELAVL48734.940
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSLACG00000011907PABPC410088.013ENSG00000090621PABPC410097.674Homo_sapiens
ENSLACG00000011907PABPC49986.508ENSAPOG00000001161pabpc49986.321Acanthochromis_polyacanthus
ENSLACG00000011907PABPC49951.438ENSAMEG00000015083-9951.118Ailuropoda_melanoleuca
ENSLACG00000011907PABPC410082.805ENSAMEG00000011535-9984.163Ailuropoda_melanoleuca
ENSLACG00000011907PABPC410087.107ENSACIG00000023343pabpc49987.579Amphilophus_citrinellus
ENSLACG00000011907PABPC49986.508ENSAOCG00000021529pabpc49986.321Amphiprion_ocellaris
ENSLACG00000011907PABPC49986.508ENSAPEG00000019196pabpc49986.321Amphiprion_percula
ENSLACG00000011907PABPC49986.688ENSATEG00000007402pabpc49986.656Anabas_testudineus
ENSLACG00000011907PABPC410092.271ENSAPLG00000009729-10092.271Anas_platyrhynchos
ENSLACG00000011907PABPC49990.053ENSACAG00000002544PABPC410090.053Anolis_carolinensis
ENSLACG00000011907PABPC410088.013ENSANAG00000025079PABPC49988.013Aotus_nancymaae
ENSLACG00000011907PABPC410086.792ENSACLG00000019558pabpc49987.264Astatotilapia_calliptera
ENSLACG00000011907PABPC410081.947ENSAMXG00000018779pabpc49982.418Astyanax_mexicanus
ENSLACG00000011907PABPC410084.877ENSBTAG00000017125PABPC49985.031Bos_taurus
ENSLACG00000011907PABPC45785.030ENSBTAG00000048536-9385.030Bos_taurus
ENSLACG00000011907PABPC47779.184ENSCJAG00000045953-9279.098Callithrix_jacchus
ENSLACG00000011907PABPC410088.013ENSCJAG00000002512-9988.013Callithrix_jacchus
ENSLACG00000011907PABPC410088.170ENSCAFG00000003081PABPC49988.170Canis_familiaris
ENSLACG00000011907PABPC49688.468ENSCAFG00020004161PABPC49984.314Canis_lupus_dingo
ENSLACG00000011907PABPC410084.314ENSCHIG00000019398-9984.314Capra_hircus
ENSLACG00000011907PABPC410068.372ENSCHIG00000023385-9968.372Capra_hircus
ENSLACG00000011907PABPC410088.013ENSTSYG00000006532PABPC49988.013Carlito_syrichta
ENSLACG00000011907PABPC49988.095ENSCAPG00000015984PABPC49988.095Cavia_aperea
ENSLACG00000011907PABPC410088.170ENSCPOG00000009552PABPC49988.170Cavia_porcellus
ENSLACG00000011907PABPC410087.697ENSCCAG00000037306PABPC49987.697Cebus_capucinus
ENSLACG00000011907PABPC410088.170ENSCATG00000042164PABPC49988.170Cercocebus_atys
ENSLACG00000011907PABPC410087.855ENSCLAG00000011899PABPC49987.855Chinchilla_lanigera
ENSLACG00000011907PABPC410084.314ENSCSAG00000001135PABPC49984.314Chlorocebus_sabaeus
ENSLACG00000011907PABPC48590.741ENSCHOG00000005327PABPC48090.741Choloepus_hoffmanni
ENSLACG00000011907PABPC410093.375ENSCPBG00000001038PABPC410093.375Chrysemys_picta_bellii
ENSLACG00000011907PABPC49988.480ENSCANG00000034177PABPC49988.480Colobus_angolensis_palliatus
ENSLACG00000011907PABPC49986.262ENSCGRG00001018166Pabpc410084.664Cricetulus_griseus_chok1gshd
ENSLACG00000011907PABPC49886.386ENSCGRG00000009777Pabpc410084.762Cricetulus_griseus_crigri
ENSLACG00000011907PABPC49985.827ENSCSEG00000000130pabpc49986.299Cynoglossus_semilaevis
ENSLACG00000011907PABPC49986.922ENSCVAG00000019246pabpc49987.400Cyprinodon_variegatus
ENSLACG00000011907PABPC49987.898ENSDARG00000059259pabpc49988.264Danio_rerio
ENSLACG00000011907PABPC49987.389ENSDNOG00000018444-9987.389Dasypus_novemcinctus
ENSLACG00000011907PABPC410085.781ENSDORG00000011581Pabpc49985.781Dipodomys_ordii
ENSLACG00000011907PABPC48757.273ENSETEG00000009172-9957.273Echinops_telfairi
ENSLACG00000011907PABPC410095.312ENSETEG00000018453-8495.312Echinops_telfairi
ENSLACG00000011907PABPC49778.837ENSEBUG00000013782pabpc49978.165Eptatretus_burgeri
ENSLACG00000011907PABPC49977.901ENSEBUG00000000992pabpc49977.389Eptatretus_burgeri
ENSLACG00000011907PABPC410084.465ENSEASG00005014119PABPC49984.465Equus_asinus_asinus
ENSLACG00000011907PABPC410084.465ENSECAG00000009396PABPC49984.465Equus_caballus
ENSLACG00000011907PABPC49882.642ENSEEUG00000002962PABPC49982.353Erinaceus_europaeus
ENSLACG00000011907PABPC49986.551ENSELUG00000003195pabpc49986.813Esox_lucius
ENSLACG00000011907PABPC410088.170ENSFCAG00000015254-9988.170Felis_catus
ENSLACG00000011907PABPC410092.114ENSFALG00000000543PABPC410092.114Ficedula_albicollis
ENSLACG00000011907PABPC49055.814ENSFDAG00000010581-10053.608Fukomys_damarensis
ENSLACG00000011907PABPC410083.107ENSFDAG00000020016-9984.012Fukomys_damarensis
ENSLACG00000011907PABPC410086.478ENSFHEG00000007548pabpc49986.950Fundulus_heteroclitus
ENSLACG00000011907PABPC410084.301ENSGMOG00000019025pabpc49984.772Gadus_morhua
ENSLACG00000011907PABPC410092.587ENSGALG00000003800PABPC410092.587Gallus_gallus
ENSLACG00000011907PABPC49993.396ENSGAFG00000018195pabpc49897.222Gambusia_affinis
ENSLACG00000011907PABPC49984.748ENSGACG00000007179pabpc49985.220Gasterosteus_aculeatus
ENSLACG00000011907PABPC410093.375ENSGAGG00000001888PABPC410093.375Gopherus_agassizii
ENSLACG00000011907PABPC410088.013ENSGGOG00000004002PABPC49988.013Gorilla_gorilla
ENSLACG00000011907PABPC410086.635ENSHBUG00000020206pabpc49987.107Haplochromis_burtoni
ENSLACG00000011907PABPC410088.013ENSHGLG00000011162PABPC49988.013Heterocephalus_glaber_female
ENSLACG00000011907PABPC410088.013ENSHGLG00100001580PABPC49988.013Heterocephalus_glaber_male
ENSLACG00000011907PABPC49986.278ENSHCOG00000012694pabpc49986.278Hippocampus_comes
ENSLACG00000011907PABPC49887.019ENSIPUG00000016620pabpc49986.950Ictalurus_punctatus
ENSLACG00000011907PABPC410087.066ENSSTOG00000010416PABPC49986.120Ictidomys_tridecemlineatus
ENSLACG00000011907PABPC410083.617ENSJJAG00000007781Pabpc49983.617Jaculus_jaculus
ENSLACG00000011907PABPC410085.400ENSKMAG00000013597pabpc49985.938Kryptolebias_marmoratus
ENSLACG00000011907PABPC410085.423ENSLBEG00000013654pabpc49984.688Labrus_bergylta
ENSLACG00000011907PABPC410090.297ENSLOCG00000001877pabpc410090.923Lepisosteus_oculatus
ENSLACG00000011907PABPC410087.066ENSLAFG00000000151PABPC49987.066Loxodonta_africana
ENSLACG00000011907PABPC410088.170ENSMFAG00000041481PABPC49988.170Macaca_fascicularis
ENSLACG00000011907PABPC410084.314ENSMMUG00000007497PABPC49984.314Macaca_mulatta
ENSLACG00000011907PABPC410088.013ENSMNEG00000043054PABPC49988.013Macaca_nemestrina
ENSLACG00000011907PABPC410088.170ENSMLEG00000040716PABPC49988.170Mandrillus_leucophaeus
ENSLACG00000011907PABPC49986.349ENSMAMG00000010025pabpc49986.478Mastacembelus_armatus
ENSLACG00000011907PABPC410086.635ENSMZEG00005006141pabpc49987.107Maylandia_zebra
ENSLACG00000011907PABPC49989.002ENSMGAG00000005408PABPC410089.002Meleagris_gallopavo
ENSLACG00000011907PABPC47693.814ENSMAUG00000019763-8589.091Mesocricetus_auratus
ENSLACG00000011907PABPC47280.861ENSMAUG00000001295-9780.861Mesocricetus_auratus
ENSLACG00000011907PABPC45782.635ENSMAUG00000004089-9280.702Mesocricetus_auratus
ENSLACG00000011907PABPC48985.866ENSMICG00000016633-10085.816Microcebus_murinus
ENSLACG00000011907PABPC49975.442ENSMICG00000036729-9975.442Microcebus_murinus
ENSLACG00000011907PABPC49987.758ENSMOCG00000006763Pabpc49987.224Microtus_ochrogaster
ENSLACG00000011907PABPC410083.780ENSMMOG00000002363pabpc49982.812Mola_mola
ENSLACG00000011907PABPC45973.067ENSMODG00000018051-9673.067Monodelphis_domestica
ENSLACG00000011907PABPC410086.818ENSMODG00000017657-10086.818Monodelphis_domestica
ENSLACG00000011907PABPC49986.371ENSMALG00000011017pabpc49986.185Monopterus_albus
ENSLACG00000011907PABPC49975.398MGP_CAROLIEiJ_G0024864-9975.398Mus_caroli
ENSLACG00000011907PABPC410082.353MGP_CAROLIEiJ_G0026435-10097.872Mus_caroli
ENSLACG00000011907PABPC410087.382ENSMUSG00000011257Pabpc410096.429Mus_musculus
ENSLACG00000011907PABPC49982.722MGP_PahariEiJ_G0028765Pabpc410098.582Mus_pahari
ENSLACG00000011907PABPC49964.053MGP_SPRETEiJ_G0027415Pabpc410097.872Mus_spretus
ENSLACG00000011907PABPC49548.105ENSMPUG00000006836-10048.105Mustela_putorius_furo
ENSLACG00000011907PABPC410082.956ENSMPUG00000014414-9984.314Mustela_putorius_furo
ENSLACG00000011907PABPC410086.909ENSMLUG00000012068PABPC49986.909Myotis_lucifugus
ENSLACG00000011907PABPC410086.909ENSNGAG00000018292Pabpc49986.909Nannospalax_galili
ENSLACG00000011907PABPC45996.635ENSNBRG00000009708pabpc49896.635Neolamprologus_brichardi
ENSLACG00000011907PABPC46592.857ENSNBRG00000010047-7292.857Neolamprologus_brichardi
ENSLACG00000011907PABPC410088.170ENSNLEG00000011928PABPC49988.170Nomascus_leucogenys
ENSLACG00000011907PABPC48492.063ENSOPRG00000011984PABPC48692.063Ochotona_princeps
ENSLACG00000011907PABPC45384.286ENSODEG00000013457-10084.286Octodon_degus
ENSLACG00000011907PABPC49976.939ENSODEG00000017434-9977.149Octodon_degus
ENSLACG00000011907PABPC410087.539ENSODEG00000006592-9987.539Octodon_degus
ENSLACG00000011907PABPC410086.635ENSONIG00000008176pabpc49987.107Oreochromis_niloticus
ENSLACG00000011907PABPC410092.429ENSOANG00000010001PABPC410092.429Ornithorhynchus_anatinus
ENSLACG00000011907PABPC49684.434ENSOCUG00000000562PABPC48884.434Oryctolagus_cuniculus
ENSLACG00000011907PABPC49992.593ENSORLG00000017479pabpc49992.593Oryzias_latipes
ENSLACG00000011907PABPC49992.593ENSORLG00020018644pabpc49992.593Oryzias_latipes_hni
ENSLACG00000011907PABPC49992.593ENSORLG00015015042pabpc49992.593Oryzias_latipes_hsok
ENSLACG00000011907PABPC49985.851ENSOMEG00000014410pabpc49985.714Oryzias_melastigma
ENSLACG00000011907PABPC410084.769ENSOGAG00000004067PABPC49984.923Otolemur_garnettii
ENSLACG00000011907PABPC410084.314ENSOARG00000020060PABPC49984.314Ovis_aries
ENSLACG00000011907PABPC410088.013ENSPPAG00000043625PABPC49988.013Pan_paniscus
ENSLACG00000011907PABPC410088.170ENSPPRG00000024727PABPC49988.170Panthera_pardus
ENSLACG00000011907PABPC410088.170ENSPTIG00000005829PABPC49988.170Panthera_tigris_altaica
ENSLACG00000011907PABPC410088.013ENSPTRG00000000573PABPC49988.013Pan_troglodytes
ENSLACG00000011907PABPC410088.170ENSPANG00000009484PABPC49988.170Papio_anubis
ENSLACG00000011907PABPC49987.717ENSPKIG00000025356pabpc49988.189Paramormyrops_kingsleyae
ENSLACG00000011907PABPC410093.375ENSPSIG00000016892PABPC410093.375Pelodiscus_sinensis
ENSLACG00000011907PABPC410083.912ENSPMGG00000009073pabpc49983.465Periophthalmus_magnuspinnatus
ENSLACG00000011907PABPC410086.751ENSPEMG00000023569-9986.751Peromyscus_maniculatus_bairdii
ENSLACG00000011907PABPC49983.123ENSPEMG00000024193-9983.123Peromyscus_maniculatus_bairdii
ENSLACG00000011907PABPC49772.802ENSPMAG00000007885pabpc49972.455Petromyzon_marinus
ENSLACG00000011907PABPC48974.784ENSPMAG00000002836pabpc410074.957Petromyzon_marinus
ENSLACG00000011907PABPC410090.852ENSPCIG00000020674PABPC410094.118Phascolarctos_cinereus
ENSLACG00000011907PABPC410086.299ENSPFOG00000002682pabpc49986.950Poecilia_formosa
ENSLACG00000011907PABPC410086.457ENSPLAG00000010112pabpc49987.107Poecilia_latipinna
ENSLACG00000011907PABPC49986.963ENSPMEG00000019739pabpc49986.950Poecilia_mexicana
ENSLACG00000011907PABPC410086.635ENSPREG00000001589pabpc49987.107Poecilia_reticulata
ENSLACG00000011907PABPC410084.163ENSPPYG00000001506PABPC49984.163Pongo_abelii
ENSLACG00000011907PABPC410079.638ENSPCAG00000003341PABPC49979.638Procavia_capensis
ENSLACG00000011907PABPC410087.244ENSPCOG00000023725-9987.402Propithecus_coquereli
ENSLACG00000011907PABPC49969.739ENSPCOG00000025882-9986.000Propithecus_coquereli
ENSLACG00000011907PABPC49983.110ENSPVAG00000002187PABPC49983.110Pteropus_vampyrus
ENSLACG00000011907PABPC410086.792ENSPNYG00000006134pabpc49987.264Pundamilia_nyererei
ENSLACG00000011907PABPC49987.107ENSPNAG00000024355pabpc49987.579Pygocentrus_nattereri
ENSLACG00000011907PABPC410085.162ENSRNOG00000015642Pabpc49985.162Rattus_norvegicus
ENSLACG00000011907PABPC410082.998ENSRNOG00000028592AABR07035074.19982.998Rattus_norvegicus
ENSLACG00000011907PABPC410088.170ENSRBIG00000039761PABPC49988.170Rhinopithecus_bieti
ENSLACG00000011907PABPC410088.170ENSRROG00000033355PABPC49988.170Rhinopithecus_roxellana
ENSLACG00000011907PABPC410087.697ENSSBOG00000026193PABPC49987.697Saimiri_boliviensis_boliviensis
ENSLACG00000011907PABPC410090.852ENSSHAG00000018139PABPC410090.852Sarcophilus_harrisii
ENSLACG00000011907PABPC49988.342ENSSFOG00015023514pabpc49988.342Scleropages_formosus
ENSLACG00000011907PABPC49985.782ENSSMAG00000009007pabpc49986.256Scophthalmus_maximus
ENSLACG00000011907PABPC49986.508ENSSDUG00000012683pabpc49986.321Seriola_dumerili
ENSLACG00000011907PABPC49986.508ENSSLDG00000013025pabpc49986.321Seriola_lalandi_dorsalis
ENSLACG00000011907PABPC410077.677ENSSARG00000000310PABPC49977.677Sorex_araneus
ENSLACG00000011907PABPC410091.956ENSSPUG00000003204PABPC410092.114Sphenodon_punctatus
ENSLACG00000011907PABPC49986.508ENSSPAG00000009252pabpc49986.321Stegastes_partitus
ENSLACG00000011907PABPC48944.991ENSSSCG00000036170-9644.640Sus_scrofa
ENSLACG00000011907PABPC410088.170ENSSSCG00000003660-9988.170Sus_scrofa
ENSLACG00000011907PABPC410087.820ENSTGUG00000001266PABPC410087.820Taeniopygia_guttata
ENSLACG00000011907PABPC49986.098ENSTRUG00000005907pabpc49986.572Takifugu_rubripes
ENSLACG00000011907PABPC49981.476ENSTNIG00000016902pabpc49981.476Tetraodon_nigroviridis
ENSLACG00000011907PABPC49973.746ENSTBEG00000009035PABPC49973.746Tupaia_belangeri
ENSLACG00000011907PABPC49962.124ENSTTRG00000014340PABPC49972.241Tursiops_truncatus
ENSLACG00000011907PABPC410088.013ENSUAMG00000000303PABPC49988.013Ursus_americanus
ENSLACG00000011907PABPC410090.766ENSUMAG00000019585PABPC49992.157Ursus_maritimus
ENSLACG00000011907PABPC47871.976ENSVPAG00000010041PABPC47371.976Vicugna_pacos
ENSLACG00000011907PABPC410088.170ENSVVUG00000005215PABPC49988.170Vulpes_vulpes
ENSLACG00000011907PABPC410087.382ENSXETG00000010946pabpc410087.382Xenopus_tropicalis
ENSLACG00000011907PABPC46198.810ENSXETG00000027221-10098.810Xenopus_tropicalis
ENSLACG00000011907PABPC49991.948ENSXCOG00000013190pabpc49692.453Xiphophorus_couchianus
ENSLACG00000011907PABPC410086.635ENSXMAG00000019007pabpc49987.107Xiphophorus_maculatus

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