EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000012071 (Gene tree)
Gene ID: 102363493
Gene Symbol: POLR2A
Alias: POLR2|POLRA|RPB1
Full Name: DNA-directed RNA polymerase II subunit RPB1-like
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 29016 bases
Position: chrJH126981.1:672408-701423
Accession: 102363493
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000013716	RNA_pol_Rpb1_5	PF04998.17	5.7e-76	1	1
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	1	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	2	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	3	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	4	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	5	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	6	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	7	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	8	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	9	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	10	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	11	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	12	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	13	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	14	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	15	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	16	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	17	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	18	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	19	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	20	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	21	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	22	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	23	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	24	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	25	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	26	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	27	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	28	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	29	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	30	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	31	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	32	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	33	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	34	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	35	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	36	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	37	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	38	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	39	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	40	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	41	42
ENSLACP00000013716	RNA_pol_Rpb1_R	PF05001.13	3.1e-29	42	42
ENSLACP00000013716	RNA_pol_Rpb1_4	PF05000.17	3.4e-38	1	1
ENSLACP00000013716	RNA_pol_Rpb1_2	PF00623.20	3e-75	1	1
ENSLACP00000013716	RNA_pol_Rpb1_3	PF04983.18	2.2e-49	1	1
ENSLACP00000013716	RNA_pol_Rpb1_1	PF04997.12	2.7e-103	1	1
ENSLACP00000013716	RNA_pol_Rpb1_7	PF04990.12	2.7e-47	1	1
ENSLACP00000013716	RNA_pol_Rpb1_6	PF04992.14	2.8e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000013813	POLR2A-201	5884	XM_005997933	ENSLACP00000013716	1920 (aa)	-	H3AVP5

Gene Model

Click here to download ENSLACG00000012071's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000012071's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000012071	POLR2A	81	85.777	ENSAPOG00000006552	polr2a	90	85.705	Acanthochromis_polyacanthus
ENSLACG00000012071	POLR2A	81	86.924	ENSAMEG00000016265	-	80	86.869	Ailuropoda_melanoleuca
ENSLACG00000012071	POLR2A	81	83.439	ENSACIG00000015982	polr2a	80	83.365	Amphilophus_citrinellus
ENSLACG00000012071	POLR2A	87	94.958	ENSAOCG00000004255	polr2a	90	85.769	Amphiprion_ocellaris
ENSLACG00000012071	POLR2A	81	85.841	ENSAPEG00000012623	polr2a	80	85.769	Amphiprion_percula
ENSLACG00000012071	POLR2A	81	85.525	ENSATEG00000019644	polr2a	80	85.452	Anabas_testudineus
ENSLACG00000012071	POLR2A	81	87.595	ENSACAG00000014561	POLR2A	80	87.540	Anolis_carolinensis
ENSLACG00000012071	POLR2A	81	87.152	ENSANAG00000020093	-	80	87.097	Aotus_nancymaae
ENSLACG00000012071	POLR2A	91	93.367	ENSACLG00000006735	polr2a	80	85.136	Astatotilapia_calliptera
ENSLACG00000012071	POLR2A	81	85.714	ENSAMXG00000020046	polr2a	80	85.642	Astyanax_mexicanus
ENSLACG00000012071	POLR2A	81	87.152	ENSBTAG00000046765	POLR2A	80	87.097	Bos_taurus
ENSLACG00000012071	POLR2A	94	67.442	WBGene00000123	ama-1	98	75.833	Caenorhabditis_elegans
ENSLACG00000012071	POLR2A	81	87.215	ENSCAFG00000016532	POLR2A	98	87.160	Canis_familiaris
ENSLACG00000012071	POLR2A	81	86.148	ENSCAFG00020007929	-	80	86.094	Canis_lupus_dingo
ENSLACG00000012071	POLR2A	81	87.152	ENSCHIG00000027173	-	80	87.097	Capra_hircus
ENSLACG00000012071	POLR2A	90	96.970	ENSTSYG00000012803	-	83	84.460	Carlito_syrichta
ENSLACG00000012071	POLR2A	100	84.102	ENSCAPG00000001882	-	100	94.805	Cavia_aperea
ENSLACG00000012071	POLR2A	100	96.970	ENSCPOG00000014812	-	98	94.805	Cavia_porcellus
ENSLACG00000012071	POLR2A	81	87.152	ENSCCAG00000020938	-	80	87.097	Cebus_capucinus
ENSLACG00000012071	POLR2A	81	87.152	ENSCATG00000013680	-	80	87.097	Cercocebus_atys
ENSLACG00000012071	POLR2A	81	87.025	ENSCLAG00000012196	-	80	86.970	Chinchilla_lanigera
ENSLACG00000012071	POLR2A	81	78.365	ENSCSAG00000011644	-	80	78.225	Chlorocebus_sabaeus
ENSLACG00000012071	POLR2A	80	91.935	ENSCPBG00000012697	POLR2A	82	91.935	Chrysemys_picta_bellii
ENSLACG00000012071	POLR2A	99	69.712	ENSCING00000007884	-	99	70.025	Ciona_intestinalis
ENSLACG00000012071	POLR2A	96	83.333	ENSCSAVG00000008334	-	98	83.721	Ciona_savignyi
ENSLACG00000012071	POLR2A	81	86.329	ENSCANG00000010622	-	80	86.275	Colobus_angolensis_palliatus
ENSLACG00000012071	POLR2A	93	96.970	ENSCGRG00001003538	Polr2a	83	83.039	Cricetulus_griseus_chok1gshd
ENSLACG00000012071	POLR2A	81	83.552	ENSCGRG00000012105	Polr2a	98	83.500	Cricetulus_griseus_crigri
ENSLACG00000012071	POLR2A	81	85.209	ENSCSEG00000002635	polr2a	80	85.199	Cynoglossus_semilaevis
ENSLACG00000012071	POLR2A	81	85.398	ENSCVAG00000005156	polr2a	80	85.326	Cyprinodon_variegatus
ENSLACG00000012071	POLR2A	81	85.281	ENSDARG00000099966	polr2a	80	85.209	Danio_rerio
ENSLACG00000012071	POLR2A	81	85.417	ENSDNOG00000016482	-	80	85.363	Dasypus_novemcinctus
ENSLACG00000012071	POLR2A	81	87.152	ENSDORG00000008667	Polr2a	80	87.097	Dipodomys_ordii
ENSLACG00000012071	POLR2A	99	64.377	FBgn0003277	RpII215	98	68.660	Drosophila_melanogaster
ENSLACG00000012071	POLR2A	88	93.227	ENSETEG00000002540	-	80	93.227	Echinops_telfairi
ENSLACG00000012071	POLR2A	81	79.759	ENSEBUG00000013967	polr2a	80	79.760	Eptatretus_burgeri
ENSLACG00000012071	POLR2A	91	82.911	ENSEASG00005019114	-	81	85.009	Equus_asinus_asinus
ENSLACG00000012071	POLR2A	81	87.089	ENSECAG00000018485	POLR2A	80	87.034	Equus_caballus
ENSLACG00000012071	POLR2A	84	96.078	ENSEEUG00000001154	-	93	86.376	Erinaceus_europaeus
ENSLACG00000012071	POLR2A	88	81.784	ENSELUG00000014284	polr2a	82	82.212	Esox_lucius
ENSLACG00000012071	POLR2A	81	87.152	ENSFDAG00000008287	-	80	87.097	Fukomys_damarensis
ENSLACG00000012071	POLR2A	88	85.335	ENSFHEG00000001768	polr2a	93	85.262	Fundulus_heteroclitus
ENSLACG00000012071	POLR2A	99	81.824	ENSGMOG00000007725	polr2a	98	100.000	Gadus_morhua
ENSLACG00000012071	POLR2A	99	94.366	ENSGAFG00000005389	polr2a	98	83.302	Gambusia_affinis
ENSLACG00000012071	POLR2A	99	82.248	ENSGACG00000019366	polr2a	98	79.819	Gasterosteus_aculeatus
ENSLACG00000012071	POLR2A	81	84.912	ENSGGOG00000014800	-	93	94.340	Gorilla_gorilla
ENSLACG00000012071	POLR2A	88	85.209	ENSHBUG00000018937	polr2a	97	83.112	Haplochromis_burtoni
ENSLACG00000012071	POLR2A	81	87.152	ENSHGLG00000012381	POLR2A	80	87.097	Heterocephalus_glaber_female
ENSLACG00000012071	POLR2A	81	87.152	ENSHGLG00100014843	POLR2A	80	87.097	Heterocephalus_glaber_male
ENSLACG00000012071	POLR2A	81	85.082	ENSHCOG00000011874	polr2a	80	85.009	Hippocampus_comes
ENSLACG00000012071	POLR2A	81	85.398	ENSIPUG00000002613	Polr2a	80	85.326	Ictalurus_punctatus
ENSLACG00000012071	POLR2A	81	87.152	ENSSTOG00000001304	-	80	87.097	Ictidomys_tridecemlineatus
ENSLACG00000012071	POLR2A	81	87.025	ENSJJAG00000013049	Polr2a	80	86.970	Jaculus_jaculus
ENSLACG00000012071	POLR2A	80	76.139	ENSKMAG00000016343	polr2a	83	76.474	Kryptolebias_marmoratus
ENSLACG00000012071	POLR2A	81	85.525	ENSLBEG00000027652	polr2a	80	85.452	Labrus_bergylta
ENSLACG00000012071	POLR2A	90	94.581	ENSLOCG00000013863	polr2a	97	92.641	Lepisosteus_oculatus
ENSLACG00000012071	POLR2A	100	84.903	ENSLAFG00000008626	-	96	94.805	Loxodonta_africana
ENSLACG00000012071	POLR2A	81	87.152	ENSMMUG00000023620	-	92	87.097	Macaca_mulatta
ENSLACG00000012071	POLR2A	81	86.709	ENSMNEG00000040407	-	80	86.654	Macaca_nemestrina
ENSLACG00000012071	POLR2A	81	82.691	ENSMLEG00000030263	-	96	94.620	Mandrillus_leucophaeus
ENSLACG00000012071	POLR2A	81	85.588	ENSMAMG00000003351	polr2a	80	85.515	Mastacembelus_armatus
ENSLACG00000012071	POLR2A	91	93.367	ENSMZEG00005021429	polr2a	80	85.136	Maylandia_zebra
ENSLACG00000012071	POLR2A	51	95.821	ENSMAUG00000021055	-	99	95.821	Mesocricetus_auratus
ENSLACG00000012071	POLR2A	81	87.152	ENSMICG00000013372	-	95	95.137	Microcebus_murinus
ENSLACG00000012071	POLR2A	100	96.970	ENSMOCG00000018279	Polr2a	98	94.805	Microtus_ochrogaster
ENSLACG00000012071	POLR2A	87	85.082	ENSMMOG00000012515	polr2a	90	85.073	Mola_mola
ENSLACG00000012071	POLR2A	81	87.089	ENSMODG00000007009	-	80	87.034	Monodelphis_domestica
ENSLACG00000012071	POLR2A	87	85.426	ENSMALG00000008716	polr2a	97	83.365	Monopterus_albus
ENSLACG00000012071	POLR2A	81	87.152	MGP_CAROLIEiJ_G0016587	Polr2a	80	87.097	Mus_caroli
ENSLACG00000012071	POLR2A	81	87.152	ENSMUSG00000005198	Polr2a	80	87.097	Mus_musculus
ENSLACG00000012071	POLR2A	81	85.129	MGP_PahariEiJ_G0017718	Polr2a	80	85.129	Mus_pahari
ENSLACG00000012071	POLR2A	81	87.152	MGP_SPRETEiJ_G0017423	Polr2a	80	87.097	Mus_spretus
ENSLACG00000012071	POLR2A	81	87.278	ENSMPUG00000009648	-	80	87.223	Mustela_putorius_furo
ENSLACG00000012071	POLR2A	81	86.599	ENSMLUG00000009088	-	80	86.545	Myotis_lucifugus
ENSLACG00000012071	POLR2A	81	87.152	ENSNGAG00000002543	Polr2a	80	87.097	Nannospalax_galili
ENSLACG00000012071	POLR2A	91	93.367	ENSNBRG00000002005	polr2a	80	83.238	Neolamprologus_brichardi
ENSLACG00000012071	POLR2A	81	85.669	ENSNLEG00000009460	-	80	85.615	Nomascus_leucogenys
ENSLACG00000012071	POLR2A	89	96.956	ENSMEUG00000008611	-	88	87.177	Notamacropus_eugenii
ENSLACG00000012071	POLR2A	79	86.791	ENSOPRG00000015116	-	98	86.735	Ochotona_princeps
ENSLACG00000012071	POLR2A	81	85.461	ENSONIG00000009231	polr2a	80	85.389	Oreochromis_niloticus
ENSLACG00000012071	POLR2A	99	83.967	ENSOCUG00000017929	-	98	86.970	Oryctolagus_cuniculus
ENSLACG00000012071	POLR2A	81	85.398	ENSORLG00000006431	polr2a	80	85.326	Oryzias_latipes
ENSLACG00000012071	POLR2A	81	85.398	ENSORLG00020010235	polr2a	80	85.326	Oryzias_latipes_hni
ENSLACG00000012071	POLR2A	81	85.398	ENSORLG00015007075	polr2a	80	85.326	Oryzias_latipes_hsok
ENSLACG00000012071	POLR2A	91	85.488	ENSOMEG00000010713	polr2a	98	85.434	Oryzias_melastigma
ENSLACG00000012071	POLR2A	81	87.152	ENSOGAG00000033608	-	80	87.097	Otolemur_garnettii
ENSLACG00000012071	POLR2A	90	87.152	ENSOARG00000013874	-	98	87.097	Ovis_aries
ENSLACG00000012071	POLR2A	92	96.970	ENSPPAG00000043734	-	89	84.731	Pan_paniscus
ENSLACG00000012071	POLR2A	81	85.669	ENSPTRG00000008691	POLR2A	80	85.615	Pan_troglodytes
ENSLACG00000012071	POLR2A	81	86.329	ENSPANG00000024099	-	80	86.275	Papio_anubis
ENSLACG00000012071	POLR2A	75	90.597	ENSPKIG00000005727	polr2a	83	88.308	Paramormyrops_kingsleyae
ENSLACG00000012071	POLR2A	96	87.095	ENSPSIG00000014006	POLR2A	98	86.760	Pelodiscus_sinensis
ENSLACG00000012071	POLR2A	100	85.192	ENSPMGG00000019734	polr2a	98	85.452	Periophthalmus_magnuspinnatus
ENSLACG00000012071	POLR2A	81	87.152	ENSPEMG00000012521	Polr2a	80	87.097	Peromyscus_maniculatus_bairdii
ENSLACG00000012071	POLR2A	81	87.097	ENSPCIG00000028851	-	81	87.034	Phascolarctos_cinereus
ENSLACG00000012071	POLR2A	88	85.461	ENSPFOG00000007890	polr2a	95	85.389	Poecilia_formosa
ENSLACG00000012071	POLR2A	88	85.461	ENSPLAG00000007399	polr2a	95	85.389	Poecilia_latipinna
ENSLACG00000012071	POLR2A	88	85.461	ENSPMEG00000002071	polr2a	95	85.389	Poecilia_mexicana
ENSLACG00000012071	POLR2A	81	85.461	ENSPREG00000013122	polr2a	80	85.389	Poecilia_reticulata
ENSLACG00000012071	POLR2A	81	87.152	ENSPPYG00000007924	-	81	87.097	Pongo_abelii
ENSLACG00000012071	POLR2A	73	96.845	ENSPCAG00000006951	-	72	96.845	Procavia_capensis
ENSLACG00000012071	POLR2A	81	85.831	ENSPCOG00000025260	-	80	85.777	Propithecus_coquereli
ENSLACG00000012071	POLR2A	81	86.899	ENSPVAG00000005069	-	80	86.844	Pteropus_vampyrus
ENSLACG00000012071	POLR2A	81	85.272	ENSPNYG00000022340	polr2a	83	88.462	Pundamilia_nyererei
ENSLACG00000012071	POLR2A	81	85.461	ENSPNAG00000011237	polr2a	80	85.389	Pygocentrus_nattereri
ENSLACG00000012071	POLR2A	81	87.215	ENSRNOG00000028834	Polr2a	80	87.160	Rattus_norvegicus
ENSLACG00000012071	POLR2A	90	84.937	ENSRBIG00000002471	-	94	86.717	Rhinopithecus_bieti
ENSLACG00000012071	POLR2A	81	87.152	ENSRROG00000029583	-	91	86.211	Rhinopithecus_roxellana
ENSLACG00000012071	POLR2A	82	88.000	YDL140C	RPO21	98	83.544	Saccharomyces_cerevisiae
ENSLACG00000012071	POLR2A	81	87.152	ENSSBOG00000000808	-	80	87.097	Saimiri_boliviensis_boliviensis
ENSLACG00000012071	POLR2A	92	96.552	ENSSHAG00000002858	-	82	87.034	Sarcophilus_harrisii
ENSLACG00000012071	POLR2A	81	85.588	ENSSFOG00015023275	polr2a	80	85.515	Scleropages_formosus
ENSLACG00000012071	POLR2A	81	85.209	ENSSMAG00000009137	polr2a	81	85.199	Scophthalmus_maximus
ENSLACG00000012071	POLR2A	81	85.714	ENSSDUG00000020466	polr2a	80	85.642	Seriola_dumerili
ENSLACG00000012071	POLR2A	81	85.651	ENSSLDG00000020613	polr2a	80	85.579	Seriola_lalandi_dorsalis
ENSLACG00000012071	POLR2A	94	95.821	ENSSARG00000005875	-	94	95.821	Sorex_araneus
ENSLACG00000012071	POLR2A	100	94.958	ENSSPAG00000016741	polr2a	93	93.600	Stegastes_partitus
ENSLACG00000012071	POLR2A	81	86.582	ENSSSCG00000028278	-	80	86.574	Sus_scrofa
ENSLACG00000012071	POLR2A	98	79.962	ENSTRUG00000012320	polr2a	80	79.949	Takifugu_rubripes
ENSLACG00000012071	POLR2A	99	84.260	ENSTNIG00000010136	polr2a	98	84.187	Tetraodon_nigroviridis
ENSLACG00000012071	POLR2A	75	98.980	ENSTBEG00000013294	-	57	98.980	Tupaia_belangeri
ENSLACG00000012071	POLR2A	81	85.443	ENSTTRG00000014273	-	80	85.389	Tursiops_truncatus
ENSLACG00000012071	POLR2A	95	84.489	ENSUAMG00000014866	-	98	86.885	Ursus_americanus
ENSLACG00000012071	POLR2A	73	96.622	ENSUMAG00000015732	-	80	96.622	Ursus_maritimus
ENSLACG00000012071	POLR2A	66	95.017	ENSVPAG00000008842	-	71	95.017	Vicugna_pacos
ENSLACG00000012071	POLR2A	93	96.970	ENSVVUG00000027878	-	81	87.160	Vulpes_vulpes
ENSLACG00000012071	POLR2A	81	86.899	ENSXETG00000012465	polr2a	81	86.844	Xenopus_tropicalis
ENSLACG00000012071	POLR2A	88	90.226	ENSXCOG00000001804	polr2a	98	83.238	Xiphophorus_couchianus
ENSLACG00000012071	POLR2A	81	85.398	ENSXMAG00000015687	polr2a	80	85.326	Xiphophorus_maculatus