EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000012498 (Gene tree)
Gene ID: 102353992
Gene Symbol: POP1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 27067 bases
Position: chrJH127219.1:727080-754146
Accession: 102353992
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000014195	POP1	PF06978.11	2.2e-34	1	2
ENSLACP00000014195	POP1	PF06978.11	2.2e-34	2	2
ENSLACP00000014195	POPLD	PF08170.12	1.6e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000014295	POP1-201	3953	XM_006001027	ENSLACP00000014195	966 (aa)	XP_006001089	H3AX24

Gene Model

Click here to download ENSLACG00000012498's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03008	Ribosome biogenesis in eukaryotes	KEGG
lcm03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000012498's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000012498	POP1	99	55.844	ENSG00000104356	POP1	93	55.980	Homo_sapiens
ENSLACG00000012498	POP1	98	51.478	ENSAPOG00000008198	pop1	93	51.332	Acanthochromis_polyacanthus
ENSLACG00000012498	POP1	99	55.859	ENSAMEG00000000556	POP1	93	55.556	Ailuropoda_melanoleuca
ENSLACG00000012498	POP1	99	50.553	ENSACIG00000004169	POP1	97	50.352	Amphilophus_citrinellus
ENSLACG00000012498	POP1	98	50.153	ENSAOCG00000010991	pop1	93	50.611	Amphiprion_ocellaris
ENSLACG00000012498	POP1	98	47.967	ENSAPEG00000007607	pop1	97	48.374	Amphiprion_percula
ENSLACG00000012498	POP1	99	51.198	ENSATEG00000024814	POP1	96	50.847	Anabas_testudineus
ENSLACG00000012498	POP1	98	56.712	ENSAPLG00000014418	POP1	99	56.608	Anas_platyrhynchos
ENSLACG00000012498	POP1	96	55.929	ENSACAG00000016083	POP1	91	55.290	Anolis_carolinensis
ENSLACG00000012498	POP1	88	67.647	ENSANAG00000026360	POP1	94	67.647	Aotus_nancymaae
ENSLACG00000012498	POP1	98	51.583	ENSACLG00000010951	pop1	92	51.788	Astatotilapia_calliptera
ENSLACG00000012498	POP1	99	49.656	ENSAMXG00000014483	POP1	95	49.361	Astyanax_mexicanus
ENSLACG00000012498	POP1	100	55.791	ENSBTAG00000012596	POP1	93	55.903	Bos_taurus
ENSLACG00000012498	POP1	99	56.344	ENSCJAG00000015567	POP1	94	56.539	Callithrix_jacchus
ENSLACG00000012498	POP1	99	56.263	ENSCAFG00000000469	POP1	93	56.057	Canis_familiaris
ENSLACG00000012498	POP1	99	55.207	ENSCAFG00020026765	POP1	93	55.005	Canis_lupus_dingo
ENSLACG00000012498	POP1	100	54.317	ENSCHIG00000017066	POP1	93	55.207	Capra_hircus
ENSLACG00000012498	POP1	99	55.544	ENSTSYG00000003097	POP1	93	55.823	Carlito_syrichta
ENSLACG00000012498	POP1	99	54.444	ENSCAPG00000007251	POP1	93	54.343	Cavia_aperea
ENSLACG00000012498	POP1	99	55.668	ENSCPOG00000002901	POP1	93	55.668	Cavia_porcellus
ENSLACG00000012498	POP1	99	56.338	ENSCCAG00000018939	POP1	95	56.237	Cebus_capucinus
ENSLACG00000012498	POP1	99	55.823	ENSCATG00000040916	POP1	93	56.112	Cercocebus_atys
ENSLACG00000012498	POP1	99	55.769	ENSCLAG00000007208	POP1	90	55.870	Chinchilla_lanigera
ENSLACG00000012498	POP1	96	56.757	ENSCSAG00000012340	POP1	99	56.653	Chlorocebus_sabaeus
ENSLACG00000012498	POP1	91	59.519	ENSCHOG00000011432	POP1	93	59.519	Choloepus_hoffmanni
ENSLACG00000012498	POP1	97	59.873	ENSCPBG00000006373	POP1	92	59.417	Chrysemys_picta_bellii
ENSLACG00000012498	POP1	88	36.653	ENSCING00000008323	-	88	36.653	Ciona_intestinalis
ENSLACG00000012498	POP1	99	56.212	ENSCANG00000001647	POP1	93	56.124	Colobus_angolensis_palliatus
ENSLACG00000012498	POP1	100	55.601	ENSCGRG00001017308	Pop1	93	55.703	Cricetulus_griseus_chok1gshd
ENSLACG00000012498	POP1	100	51.935	ENSCGRG00000010824	Pop1	96	52.037	Cricetulus_griseus_crigri
ENSLACG00000012498	POP1	97	50.934	ENSCSEG00000008737	POP1	92	51.349	Cynoglossus_semilaevis
ENSLACG00000012498	POP1	98	51.337	ENSCVAG00000022248	pop1	93	50.926	Cyprinodon_variegatus
ENSLACG00000012498	POP1	100	54.427	ENSDNOG00000019974	POP1	93	54.628	Dasypus_novemcinctus
ENSLACG00000012498	POP1	99	49.039	ENSDORG00000015384	Pop1	93	48.837	Dipodomys_ordii
ENSLACG00000012498	POP1	88	52.134	ENSETEG00000007839	POP1	81	51.963	Echinops_telfairi
ENSLACG00000012498	POP1	99	55.912	ENSEASG00005003189	POP1	92	56.004	Equus_asinus_asinus
ENSLACG00000012498	POP1	99	55.511	ENSECAG00000024236	POP1	93	55.746	Equus_caballus
ENSLACG00000012498	POP1	53	78.049	ENSEEUG00000003050	-	55	78.049	Erinaceus_europaeus
ENSLACG00000012498	POP1	99	50.051	ENSELUG00000003526	pop1	95	49.949	Esox_lucius
ENSLACG00000012498	POP1	99	55.075	ENSFCAG00000002168	POP1	93	55.152	Felis_catus
ENSLACG00000012498	POP1	97	55.671	ENSFALG00000005711	POP1	94	55.781	Ficedula_albicollis
ENSLACG00000012498	POP1	99	55.477	ENSFDAG00000017068	POP1	93	55.972	Fukomys_damarensis
ENSLACG00000012498	POP1	98	50.980	ENSFHEG00000019518	pop1	94	50.877	Fundulus_heteroclitus
ENSLACG00000012498	POP1	99	48.381	ENSGMOG00000000659	POP1	97	48.381	Gadus_morhua
ENSLACG00000012498	POP1	98	51.182	ENSGAFG00000019770	POP1	94	50.568	Gambusia_affinis
ENSLACG00000012498	POP1	97	48.825	ENSGACG00000003499	pop1	91	48.410	Gasterosteus_aculeatus
ENSLACG00000012498	POP1	97	60.064	ENSGAGG00000011737	POP1	91	59.114	Gopherus_agassizii
ENSLACG00000012498	POP1	99	55.912	ENSGGOG00000003176	POP1	93	56.048	Gorilla_gorilla
ENSLACG00000012498	POP1	98	51.992	ENSHBUG00000021583	pop1	92	51.596	Haplochromis_burtoni
ENSLACG00000012498	POP1	99	55.176	ENSHGLG00000006029	POP1	93	55.075	Heterocephalus_glaber_female
ENSLACG00000012498	POP1	99	55.176	ENSHGLG00100016879	POP1	93	55.075	Heterocephalus_glaber_male
ENSLACG00000012498	POP1	96	50.311	ENSHCOG00000013888	pop1	96	50.311	Hippocampus_comes
ENSLACG00000012498	POP1	100	46.577	ENSIPUG00000018336	pop1	97	46.480	Ictalurus_punctatus
ENSLACG00000012498	POP1	98	56.804	ENSSTOG00000011455	POP1	89	56.701	Ictidomys_tridecemlineatus
ENSLACG00000012498	POP1	99	53.933	ENSJJAG00000013325	Pop1	93	54.218	Jaculus_jaculus
ENSLACG00000012498	POP1	97	51.503	ENSKMAG00000001346	POP1	92	51.512	Kryptolebias_marmoratus
ENSLACG00000012498	POP1	95	49.309	ENSLBEG00000024457	POP1	95	49.009	Labrus_bergylta
ENSLACG00000012498	POP1	99	53.388	ENSLOCG00000009817	POP1	91	53.774	Lepisosteus_oculatus
ENSLACG00000012498	POP1	99	57.778	ENSLAFG00000010770	POP1	93	57.778	Loxodonta_africana
ENSLACG00000012498	POP1	99	56.212	ENSMFAG00000000347	POP1	93	56.112	Macaca_fascicularis
ENSLACG00000012498	POP1	99	56.313	ENSMNEG00000036870	POP1	93	56.212	Macaca_nemestrina
ENSLACG00000012498	POP1	99	56.212	ENSMLEG00000034986	POP1	93	56.112	Mandrillus_leucophaeus
ENSLACG00000012498	POP1	99	51.055	ENSMAMG00000004040	pop1	93	51.109	Mastacembelus_armatus
ENSLACG00000012498	POP1	98	51.890	ENSMZEG00005025448	pop1	92	51.685	Maylandia_zebra
ENSLACG00000012498	POP1	97	57.752	ENSMGAG00000012167	POP1	93	56.807	Meleagris_gallopavo
ENSLACG00000012498	POP1	100	56.065	ENSMAUG00000017537	Pop1	93	55.759	Mesocricetus_auratus
ENSLACG00000012498	POP1	99	56.263	ENSMICG00000004361	POP1	93	56.263	Microcebus_murinus
ENSLACG00000012498	POP1	100	55.701	ENSMOCG00000006356	Pop1	93	56.447	Microtus_ochrogaster
ENSLACG00000012498	POP1	96	50.374	ENSMMOG00000018242	pop1	93	49.734	Mola_mola
ENSLACG00000012498	POP1	99	56.167	ENSMODG00000006561	POP1	92	56.167	Monodelphis_domestica
ENSLACG00000012498	POP1	99	51.376	ENSMALG00000012621	POP1	94	50.964	Monopterus_albus
ENSLACG00000012498	POP1	100	55.746	MGP_CAROLIEiJ_G0019726	Pop1	93	55.746	Mus_caroli
ENSLACG00000012498	POP1	100	55.657	ENSMUSG00000022325	Pop1	93	55.657	Mus_musculus
ENSLACG00000012498	POP1	100	55.511	MGP_PahariEiJ_G0019735	Pop1	93	55.410	Mus_pahari
ENSLACG00000012498	POP1	100	55.354	MGP_SPRETEiJ_G0020622	Pop1	93	55.152	Mus_spretus
ENSLACG00000012498	POP1	99	54.783	ENSMPUG00000015250	POP1	93	54.481	Mustela_putorius_furo
ENSLACG00000012498	POP1	99	54.141	ENSMLUG00000010204	POP1	93	54.141	Myotis_lucifugus
ENSLACG00000012498	POP1	99	54.692	ENSNGAG00000001582	Pop1	93	55.141	Nannospalax_galili
ENSLACG00000012498	POP1	95	50.370	ENSNBRG00000002356	pop1	94	50.157	Neolamprologus_brichardi
ENSLACG00000012498	POP1	99	55.411	ENSNLEG00000002541	POP1	93	55.544	Nomascus_leucogenys
ENSLACG00000012498	POP1	84	64.706	ENSMEUG00000003118	POP1	86	64.706	Notamacropus_eugenii
ENSLACG00000012498	POP1	98	56.531	ENSOPRG00000007667	POP1	91	55.996	Ochotona_princeps
ENSLACG00000012498	POP1	99	53.792	ENSODEG00000003984	POP1	93	53.992	Octodon_degus
ENSLACG00000012498	POP1	98	51.829	ENSONIG00000016445	pop1	92	51.742	Oreochromis_niloticus
ENSLACG00000012498	POP1	56	69.118	ENSOANG00000001278	-	83	59.770	Ornithorhynchus_anatinus
ENSLACG00000012498	POP1	98	55.852	ENSOCUG00000017400	POP1	91	55.955	Oryctolagus_cuniculus
ENSLACG00000012498	POP1	98	51.852	ENSORLG00000002839	pop1	94	51.499	Oryzias_latipes
ENSLACG00000012498	POP1	96	50.939	ENSORLG00020022450	POP1	96	50.784	Oryzias_latipes_hni
ENSLACG00000012498	POP1	98	52.273	ENSORLG00015012746	POP1	94	51.556	Oryzias_latipes_hsok
ENSLACG00000012498	POP1	97	51.374	ENSOMEG00000006915	pop1	93	51.699	Oryzias_melastigma
ENSLACG00000012498	POP1	99	55.152	ENSOGAG00000001466	POP1	93	55.364	Otolemur_garnettii
ENSLACG00000012498	POP1	99	55.944	ENSPPAG00000018410	POP1	93	56.080	Pan_paniscus
ENSLACG00000012498	POP1	99	55.120	ENSPPRG00000005002	POP1	93	55.354	Panthera_pardus
ENSLACG00000012498	POP1	99	55.100	ENSPTIG00000016527	POP1	93	55.231	Panthera_tigris_altaica
ENSLACG00000012498	POP1	99	56.244	ENSPTRG00000020458	POP1	93	56.181	Pan_troglodytes
ENSLACG00000012498	POP1	99	56.413	ENSPANG00000009704	POP1	93	56.313	Papio_anubis
ENSLACG00000012498	POP1	98	52.079	ENSPKIG00000016325	POP1	93	51.663	Paramormyrops_kingsleyae
ENSLACG00000012498	POP1	99	57.436	ENSPSIG00000012343	POP1	93	57.231	Pelodiscus_sinensis
ENSLACG00000012498	POP1	96	49.846	ENSPMGG00000022253	POP1	95	49.742	Periophthalmus_magnuspinnatus
ENSLACG00000012498	POP1	100	55.399	ENSPEMG00000023633	Pop1	94	55.106	Peromyscus_maniculatus_bairdii
ENSLACG00000012498	POP1	96	43.377	ENSPMAG00000003209	POP1	100	42.973	Petromyzon_marinus
ENSLACG00000012498	POP1	99	55.723	ENSPCIG00000012216	POP1	92	55.723	Phascolarctos_cinereus
ENSLACG00000012498	POP1	98	51.390	ENSPFOG00000012490	POP1	94	50.932	Poecilia_formosa
ENSLACG00000012498	POP1	98	51.390	ENSPLAG00000004646	POP1	94	50.828	Poecilia_latipinna
ENSLACG00000012498	POP1	98	51.187	ENSPMEG00000019592	POP1	94	50.726	Poecilia_mexicana
ENSLACG00000012498	POP1	98	51.033	ENSPREG00000020951	POP1	93	50.570	Poecilia_reticulata
ENSLACG00000012498	POP1	99	55.912	ENSPPYG00000018777	POP1	93	56.048	Pongo_abelii
ENSLACG00000012498	POP1	99	52.983	ENSPCAG00000016662	POP1	93	52.983	Procavia_capensis
ENSLACG00000012498	POP1	99	56.250	ENSPCOG00000019420	POP1	93	56.250	Propithecus_coquereli
ENSLACG00000012498	POP1	99	55.285	ENSPVAG00000014468	POP1	93	55.623	Pteropus_vampyrus
ENSLACG00000012498	POP1	95	51.116	ENSPNYG00000004476	pop1	95	51.314	Pundamilia_nyererei
ENSLACG00000012498	POP1	98	48.532	ENSPNAG00000000265	pop1	95	48.239	Pygocentrus_nattereri
ENSLACG00000012498	POP1	100	55.657	ENSRNOG00000005243	Pop1	94	55.657	Rattus_norvegicus
ENSLACG00000012498	POP1	99	55.500	ENSRBIG00000007996	POP1	93	56.124	Rhinopithecus_bieti
ENSLACG00000012498	POP1	99	55.500	ENSRROG00000012334	POP1	93	56.112	Rhinopithecus_roxellana
ENSLACG00000012498	POP1	99	55.700	ENSSBOG00000020830	POP1	94	55.992	Saimiri_boliviensis_boliviensis
ENSLACG00000012498	POP1	99	57.622	ENSSHAG00000000296	POP1	93	57.622	Sarcophilus_harrisii
ENSLACG00000012498	POP1	98	51.731	ENSSFOG00015007429	pop1	91	51.312	Scleropages_formosus
ENSLACG00000012498	POP1	99	50.766	ENSSMAG00000010467	POP1	98	50.613	Scophthalmus_maximus
ENSLACG00000012498	POP1	98	50.555	ENSSDUG00000007817	POP1	93	50.964	Seriola_dumerili
ENSLACG00000012498	POP1	98	50.859	ENSSLDG00000012565	POP1	93	51.373	Seriola_lalandi_dorsalis
ENSLACG00000012498	POP1	99	56.548	ENSSPUG00000003550	-	92	56.548	Sphenodon_punctatus
ENSLACG00000012498	POP1	96	51.592	ENSSPAG00000014955	pop1	94	52.128	Stegastes_partitus
ENSLACG00000012498	POP1	100	55.465	ENSSSCG00000006078	POP1	93	55.465	Sus_scrofa
ENSLACG00000012498	POP1	98	51.550	ENSTGUG00000012011	-	99	51.810	Taeniopygia_guttata
ENSLACG00000012498	POP1	95	51.620	ENSTRUG00000010856	pop1	92	51.133	Takifugu_rubripes
ENSLACG00000012498	POP1	98	49.743	ENSTNIG00000013297	pop1	98	49.640	Tetraodon_nigroviridis
ENSLACG00000012498	POP1	99	53.730	ENSTBEG00000014214	POP1	98	53.589	Tupaia_belangeri
ENSLACG00000012498	POP1	100	53.754	ENSTTRG00000016071	POP1	93	53.654	Tursiops_truncatus
ENSLACG00000012498	POP1	100	54.681	ENSUAMG00000017309	POP1	98	54.681	Ursus_americanus
ENSLACG00000012498	POP1	91	68.681	ENSUMAG00000016952	POP1	93	68.681	Ursus_maritimus
ENSLACG00000012498	POP1	83	65.550	ENSVPAG00000008278	POP1	75	65.550	Vicugna_pacos
ENSLACG00000012498	POP1	99	54.894	ENSVVUG00000010994	POP1	93	54.692	Vulpes_vulpes
ENSLACG00000012498	POP1	95	46.452	ENSXCOG00000017043	POP1	90	46.227	Xiphophorus_couchianus
ENSLACG00000012498	POP1	97	51.528	ENSXMAG00000002472	POP1	92	51.212	Xiphophorus_maculatus