EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000012501 (Gene tree)
Gene ID: 102347991
Gene Symbol: SF3B3
Alias: KIAA0017|RSE1|SAP130|SF3b130
Full Name: splicing factor 3b subunit 3
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 89862 bases
Position: chrJH127384.1:728145-818006
Accession: 102347991
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000014198	CPSF_A	PF03178.15	7.6e-101	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000014298	SF3B3-201	6330	XM_006002602	ENSLACP00000014198	1205 (aa)	-	H3AX27

Gene Model

Click here to download ENSLACG00000012501's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000012501's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000012501	SF3B3	99	92.276	ENSG00000189091	SF3B3	100	100.000	Homo_sapiens
ENSLACG00000012501	SF3B3	96	90.069	ENSAPOG00000006172	sf3b3	96	90.069	Acanthochromis_polyacanthus
ENSLACG00000012501	SF3B3	99	92.429	ENSAMEG00000002187	SF3B3	98	92.429	Ailuropoda_melanoleuca
ENSLACG00000012501	SF3B3	94	87.323	ENSACIG00000016487	sf3b3	100	87.323	Amphilophus_citrinellus
ENSLACG00000012501	SF3B3	99	90.199	ENSAOCG00000007158	sf3b3	98	90.199	Amphiprion_ocellaris
ENSLACG00000012501	SF3B3	99	90.199	ENSAPEG00000022786	sf3b3	98	90.199	Amphiprion_percula
ENSLACG00000012501	SF3B3	99	90.282	ENSATEG00000013708	sf3b3	98	90.282	Anabas_testudineus
ENSLACG00000012501	SF3B3	81	91.881	ENSAPLG00000004996	SF3B3	98	91.881	Anas_platyrhynchos
ENSLACG00000012501	SF3B3	99	92.359	ENSACAG00000001817	SF3B3	98	92.359	Anolis_carolinensis
ENSLACG00000012501	SF3B3	99	92.276	ENSANAG00000028001	SF3B3	99	91.401	Aotus_nancymaae
ENSLACG00000012501	SF3B3	96	89.724	ENSACLG00000022555	sf3b3	100	87.234	Astatotilapia_calliptera
ENSLACG00000012501	SF3B3	99	90.449	ENSAMXG00000003410	sf3b3	98	90.449	Astyanax_mexicanus
ENSLACG00000012501	SF3B3	99	92.276	ENSBTAG00000010627	SF3B3	98	92.276	Bos_taurus
ENSLACG00000012501	SF3B3	99	58.306	WBGene00019323	teg-4	98	58.306	Caenorhabditis_elegans
ENSLACG00000012501	SF3B3	99	92.276	ENSCJAG00000014773	SF3B3	98	92.276	Callithrix_jacchus
ENSLACG00000012501	SF3B3	99	92.359	ENSCAFG00000020151	SF3B3	98	92.359	Canis_familiaris
ENSLACG00000012501	SF3B3	99	92.359	ENSCAFG00020020912	SF3B3	98	92.359	Canis_lupus_dingo
ENSLACG00000012501	SF3B3	99	92.359	ENSCHIG00000019822	SF3B3	98	92.359	Capra_hircus
ENSLACG00000012501	SF3B3	99	92.276	ENSTSYG00000007910	SF3B3	98	92.276	Carlito_syrichta
ENSLACG00000012501	SF3B3	84	82.609	ENSCAPG00000001484	SF3B3	90	82.609	Cavia_aperea
ENSLACG00000012501	SF3B3	99	90.947	ENSCPOG00000000586	SF3B3	98	90.947	Cavia_porcellus
ENSLACG00000012501	SF3B3	99	92.276	ENSCCAG00000017736	SF3B3	98	92.276	Cebus_capucinus
ENSLACG00000012501	SF3B3	99	92.276	ENSCATG00000036562	SF3B3	98	92.276	Cercocebus_atys
ENSLACG00000012501	SF3B3	99	92.276	ENSCLAG00000003921	SF3B3	98	92.276	Chinchilla_lanigera
ENSLACG00000012501	SF3B3	99	92.193	ENSCSAG00000004371	SF3B3	98	92.193	Chlorocebus_sabaeus
ENSLACG00000012501	SF3B3	90	90.333	ENSCHOG00000001878	SF3B3	88	90.333	Choloepus_hoffmanni
ENSLACG00000012501	SF3B3	99	92.027	ENSCPBG00000015853	SF3B3	98	92.027	Chrysemys_picta_bellii
ENSLACG00000012501	SF3B3	99	77.261	ENSCING00000001342	-	98	77.261	Ciona_intestinalis
ENSLACG00000012501	SF3B3	99	76.100	ENSCSAVG00000011454	-	98	76.100	Ciona_savignyi
ENSLACG00000012501	SF3B3	99	88.538	ENSCANG00000042920	SF3B3	98	89.037	Colobus_angolensis_palliatus
ENSLACG00000012501	SF3B3	99	92.359	ENSCGRG00001015908	Sf3b3	98	92.359	Cricetulus_griseus_chok1gshd
ENSLACG00000012501	SF3B3	99	92.359	ENSCGRG00000010180	Sf3b3	98	92.359	Cricetulus_griseus_crigri
ENSLACG00000012501	SF3B3	82	88.675	ENSCSEG00000014192	sf3b3	97	88.675	Cynoglossus_semilaevis
ENSLACG00000012501	SF3B3	99	89.784	ENSCVAG00000010459	sf3b3	98	89.784	Cyprinodon_variegatus
ENSLACG00000012501	SF3B3	99	89.618	ENSDARG00000103553	sf3b3	98	89.618	Danio_rerio
ENSLACG00000012501	SF3B3	87	91.866	ENSDNOG00000043626	SF3B3	100	91.866	Dasypus_novemcinctus
ENSLACG00000012501	SF3B3	99	92.276	ENSDORG00000014176	Sf3b3	98	92.276	Dipodomys_ordii
ENSLACG00000012501	SF3B3	99	72.570	FBgn0035162	Sf3b3	98	72.570	Drosophila_melanogaster
ENSLACG00000012501	SF3B3	83	96.296	ENSETEG00000002729	SF3B3	82	96.296	Echinops_telfairi
ENSLACG00000012501	SF3B3	99	84.136	ENSEBUG00000006117	sf3b3	98	84.136	Eptatretus_burgeri
ENSLACG00000012501	SF3B3	99	92.359	ENSEASG00005013376	SF3B3	98	92.359	Equus_asinus_asinus
ENSLACG00000012501	SF3B3	99	92.359	ENSECAG00000014053	SF3B3	98	92.359	Equus_caballus
ENSLACG00000012501	SF3B3	93	93.416	ENSEEUG00000015611	SF3B3	91	93.416	Erinaceus_europaeus
ENSLACG00000012501	SF3B3	99	88.235	ENSELUG00000015417	sf3b3	98	88.235	Esox_lucius
ENSLACG00000012501	SF3B3	99	92.359	ENSFCAG00000009487	SF3B3	98	92.359	Felis_catus
ENSLACG00000012501	SF3B3	99	91.860	ENSFALG00000007372	SF3B3	98	91.860	Ficedula_albicollis
ENSLACG00000012501	SF3B3	99	92.193	ENSFDAG00000002608	SF3B3	98	92.193	Fukomys_damarensis
ENSLACG00000012501	SF3B3	99	90.033	ENSFHEG00000017824	sf3b3	98	90.033	Fundulus_heteroclitus
ENSLACG00000012501	SF3B3	99	86.462	ENSGMOG00000008139	sf3b3	98	86.462	Gadus_morhua
ENSLACG00000012501	SF3B3	99	92.027	ENSGALG00000002531	SF3B3	98	92.027	Gallus_gallus
ENSLACG00000012501	SF3B3	99	89.701	ENSGAFG00000015206	sf3b3	98	89.701	Gambusia_affinis
ENSLACG00000012501	SF3B3	99	90.199	ENSGACG00000002646	sf3b3	98	90.199	Gasterosteus_aculeatus
ENSLACG00000012501	SF3B3	96	92.228	ENSGAGG00000006746	SF3B3	95	92.228	Gopherus_agassizii
ENSLACG00000012501	SF3B3	99	92.276	ENSGGOG00000003246	SF3B3	99	91.401	Gorilla_gorilla
ENSLACG00000012501	SF3B3	94	82.447	ENSHBUG00000005960	sf3b3	100	83.599	Haplochromis_burtoni
ENSLACG00000012501	SF3B3	99	92.276	ENSHGLG00000010135	SF3B3	98	92.276	Heterocephalus_glaber_female
ENSLACG00000012501	SF3B3	99	90.164	ENSHGLG00100011148	SF3B3	98	90.164	Heterocephalus_glaber_male
ENSLACG00000012501	SF3B3	99	89.535	ENSHCOG00000011981	sf3b3	98	89.535	Hippocampus_comes
ENSLACG00000012501	SF3B3	99	90.365	ENSIPUG00000020435	sf3b3	98	90.365	Ictalurus_punctatus
ENSLACG00000012501	SF3B3	99	92.276	ENSSTOG00000007065	SF3B3	98	92.276	Ictidomys_tridecemlineatus
ENSLACG00000012501	SF3B3	99	92.276	ENSJJAG00000003948	Sf3b3	98	92.276	Jaculus_jaculus
ENSLACG00000012501	SF3B3	99	87.957	ENSKMAG00000004066	sf3b3	97	89.896	Kryptolebias_marmoratus
ENSLACG00000012501	SF3B3	99	89.784	ENSLBEG00000018302	sf3b3	98	89.784	Labrus_bergylta
ENSLACG00000012501	SF3B3	99	90.532	ENSLOCG00000007566	sf3b3	98	90.532	Lepisosteus_oculatus
ENSLACG00000012501	SF3B3	99	92.359	ENSLAFG00000012219	SF3B3	98	92.359	Loxodonta_africana
ENSLACG00000012501	SF3B3	99	92.276	ENSMFAG00000045487	SF3B3	98	92.276	Macaca_fascicularis
ENSLACG00000012501	SF3B3	99	92.276	ENSMMUG00000017812	SF3B3	98	92.276	Macaca_mulatta
ENSLACG00000012501	SF3B3	99	92.276	ENSMNEG00000033385	SF3B3	98	92.276	Macaca_nemestrina
ENSLACG00000012501	SF3B3	99	88.704	ENSMLEG00000043891	SF3B3	97	91.401	Mandrillus_leucophaeus
ENSLACG00000012501	SF3B3	99	90.449	ENSMAMG00000016837	sf3b3	98	90.449	Mastacembelus_armatus
ENSLACG00000012501	SF3B3	90	86.961	ENSMZEG00005026015	sf3b3	99	86.961	Maylandia_zebra
ENSLACG00000012501	SF3B3	99	89.867	ENSMZEG00005010836	sf3b3	98	89.867	Maylandia_zebra
ENSLACG00000012501	SF3B3	99	92.027	ENSMGAG00000001597	SF3B3	98	92.027	Meleagris_gallopavo
ENSLACG00000012501	SF3B3	82	76.720	ENSMAUG00000013618	Sf3b3	95	76.720	Mesocricetus_auratus
ENSLACG00000012501	SF3B3	99	91.294	ENSMICG00000001363	SF3B3	98	91.294	Microcebus_murinus
ENSLACG00000012501	SF3B3	99	92.359	ENSMOCG00000006108	Sf3b3	98	92.359	Microtus_ochrogaster
ENSLACG00000012501	SF3B3	90	87.144	ENSMMOG00000002598	sf3b3	97	87.144	Mola_mola
ENSLACG00000012501	SF3B3	99	87.884	ENSMODG00000014363	SF3B3	98	87.884	Monodelphis_domestica
ENSLACG00000012501	SF3B3	99	90.116	ENSMALG00000008014	sf3b3	98	90.116	Monopterus_albus
ENSLACG00000012501	SF3B3	99	92.359	MGP_CAROLIEiJ_G0031563	Sf3b3	98	92.359	Mus_caroli
ENSLACG00000012501	SF3B3	99	92.359	ENSMUSG00000033732	Sf3b3	98	92.359	Mus_musculus
ENSLACG00000012501	SF3B3	99	92.276	MGP_SPRETEiJ_G0032681	Sf3b3	98	92.276	Mus_spretus
ENSLACG00000012501	SF3B3	99	92.359	ENSMPUG00000010277	SF3B3	98	92.359	Mustela_putorius_furo
ENSLACG00000012501	SF3B3	99	92.276	ENSMLUG00000014607	SF3B3	98	92.276	Myotis_lucifugus
ENSLACG00000012501	SF3B3	99	92.276	ENSNGAG00000021903	Sf3b3	98	92.276	Nannospalax_galili
ENSLACG00000012501	SF3B3	85	91.667	ENSNBRG00000007197	sf3b3	99	91.667	Neolamprologus_brichardi
ENSLACG00000012501	SF3B3	99	90.788	ENSNLEG00000016127	SF3B3	99	91.401	Nomascus_leucogenys
ENSLACG00000012501	SF3B3	92	91.293	ENSMEUG00000004479	SF3B3	92	91.293	Notamacropus_eugenii
ENSLACG00000012501	SF3B3	99	89.092	ENSOPRG00000009847	SF3B3	100	89.092	Ochotona_princeps
ENSLACG00000012501	SF3B3	99	92.193	ENSODEG00000014154	SF3B3	98	92.193	Octodon_degus
ENSLACG00000012501	SF3B3	99	90.116	ENSONIG00000011198	sf3b3	98	90.116	Oreochromis_niloticus
ENSLACG00000012501	SF3B3	99	92.276	ENSOANG00000001161	-	98	92.276	Ornithorhynchus_anatinus
ENSLACG00000012501	SF3B3	99	90.116	ENSOCUG00000004139	SF3B3	98	90.116	Oryctolagus_cuniculus
ENSLACG00000012501	SF3B3	99	89.867	ENSORLG00000013472	sf3b3	98	89.867	Oryzias_latipes
ENSLACG00000012501	SF3B3	99	89.867	ENSORLG00020017473	sf3b3	98	89.867	Oryzias_latipes_hni
ENSLACG00000012501	SF3B3	99	89.867	ENSORLG00015007710	sf3b3	98	89.867	Oryzias_latipes_hsok
ENSLACG00000012501	SF3B3	99	89.618	ENSOMEG00000014483	sf3b3	98	89.618	Oryzias_melastigma
ENSLACG00000012501	SF3B3	99	92.346	ENSOGAG00000016051	SF3B3	98	92.346	Otolemur_garnettii
ENSLACG00000012501	SF3B3	99	92.129	ENSOARG00000004816	SF3B3	98	92.129	Ovis_aries
ENSLACG00000012501	SF3B3	99	92.276	ENSPPAG00000026807	SF3B3	99	91.401	Pan_paniscus
ENSLACG00000012501	SF3B3	99	92.359	ENSPPRG00000001686	SF3B3	98	92.359	Panthera_pardus
ENSLACG00000012501	SF3B3	91	89.315	ENSPTIG00000020382	SF3B3	100	89.315	Panthera_tigris_altaica
ENSLACG00000012501	SF3B3	99	92.276	ENSPTRG00000008308	SF3B3	99	91.401	Pan_troglodytes
ENSLACG00000012501	SF3B3	99	92.276	ENSPANG00000024075	SF3B3	98	92.276	Papio_anubis
ENSLACG00000012501	SF3B3	99	89.784	ENSPKIG00000002712	sf3b3	98	89.784	Paramormyrops_kingsleyae
ENSLACG00000012501	SF3B3	91	91.781	ENSPSIG00000002232	SF3B3	100	91.781	Pelodiscus_sinensis
ENSLACG00000012501	SF3B3	99	92.359	ENSPEMG00000008603	Sf3b3	98	92.359	Peromyscus_maniculatus_bairdii
ENSLACG00000012501	SF3B3	99	88.538	ENSPMAG00000001793	sf3b3	98	88.538	Petromyzon_marinus
ENSLACG00000012501	SF3B3	99	92.276	ENSPCIG00000014927	SF3B3	98	92.276	Phascolarctos_cinereus
ENSLACG00000012501	SF3B3	99	89.867	ENSPFOG00000015516	sf3b3	98	89.867	Poecilia_formosa
ENSLACG00000012501	SF3B3	99	89.867	ENSPLAG00000014330	sf3b3	98	89.867	Poecilia_latipinna
ENSLACG00000012501	SF3B3	99	89.950	ENSPMEG00000019856	sf3b3	98	89.950	Poecilia_mexicana
ENSLACG00000012501	SF3B3	81	89.701	ENSPREG00000019669	sf3b3	95	89.701	Poecilia_reticulata
ENSLACG00000012501	SF3B3	95	92.920	ENSPPYG00000007539	SF3B3	98	92.920	Pongo_abelii
ENSLACG00000012501	SF3B3	99	70.930	ENSPCAG00000002623	SF3B3	98	70.930	Procavia_capensis
ENSLACG00000012501	SF3B3	83	96.053	ENSPCOG00000026582	SF3B3	97	96.053	Propithecus_coquereli
ENSLACG00000012501	SF3B3	99	92.276	ENSPVAG00000000684	SF3B3	98	92.276	Pteropus_vampyrus
ENSLACG00000012501	SF3B3	99	89.867	ENSPNYG00000003528	sf3b3	98	89.867	Pundamilia_nyererei
ENSLACG00000012501	SF3B3	99	90.532	ENSPNAG00000015419	sf3b3	98	90.532	Pygocentrus_nattereri
ENSLACG00000012501	SF3B3	99	92.359	ENSRNOG00000017724	Sf3b3	98	92.359	Rattus_norvegicus
ENSLACG00000012501	SF3B3	99	92.276	ENSRBIG00000021904	SF3B3	98	92.276	Rhinopithecus_bieti
ENSLACG00000012501	SF3B3	99	92.276	ENSRROG00000045703	SF3B3	98	92.276	Rhinopithecus_roxellana
ENSLACG00000012501	SF3B3	99	92.276	ENSSBOG00000029156	SF3B3	99	91.401	Saimiri_boliviensis_boliviensis
ENSLACG00000012501	SF3B3	99	92.276	ENSSHAG00000000372	SF3B3	98	92.276	Sarcophilus_harrisii
ENSLACG00000012501	SF3B3	99	90.947	ENSSFOG00015012877	sf3b3	98	90.947	Scleropages_formosus
ENSLACG00000012501	SF3B3	99	89.618	ENSSMAG00000014386	sf3b3	98	89.618	Scophthalmus_maximus
ENSLACG00000012501	SF3B3	99	90.365	ENSSDUG00000021201	sf3b3	98	90.365	Seriola_dumerili
ENSLACG00000012501	SF3B3	99	90.282	ENSSLDG00000017532	sf3b3	98	90.282	Seriola_lalandi_dorsalis
ENSLACG00000012501	SF3B3	93	91.907	ENSSARG00000006917	SF3B3	91	91.907	Sorex_araneus
ENSLACG00000012501	SF3B3	99	92.193	ENSSPUG00000006253	SF3B3	98	92.193	Sphenodon_punctatus
ENSLACG00000012501	SF3B3	99	82.226	ENSSPAG00000003125	sf3b3	98	82.226	Stegastes_partitus
ENSLACG00000012501	SF3B3	99	92.359	ENSSSCG00000025323	SF3B3	98	92.359	Sus_scrofa
ENSLACG00000012501	SF3B3	99	92.033	ENSTGUG00000006082	SF3B3	98	92.033	Taeniopygia_guttata
ENSLACG00000012501	SF3B3	50	76.756	ENSTRUG00000015623	sf3b3	88	77.013	Takifugu_rubripes
ENSLACG00000012501	SF3B3	89	89.302	ENSTNIG00000004857	sf3b3	98	89.302	Tetraodon_nigroviridis
ENSLACG00000012501	SF3B3	93	77.471	ENSTBEG00000002946	SF3B3	98	77.471	Tupaia_belangeri
ENSLACG00000012501	SF3B3	99	91.528	ENSTTRG00000005855	SF3B3	98	91.528	Tursiops_truncatus
ENSLACG00000012501	SF3B3	99	92.359	ENSUAMG00000006780	SF3B3	98	92.359	Ursus_americanus
ENSLACG00000012501	SF3B3	99	92.359	ENSUMAG00000017757	SF3B3	98	92.359	Ursus_maritimus
ENSLACG00000012501	SF3B3	99	76.495	ENSVPAG00000003202	SF3B3	98	76.495	Vicugna_pacos
ENSLACG00000012501	SF3B3	99	92.442	ENSVVUG00000017922	SF3B3	98	92.442	Vulpes_vulpes
ENSLACG00000012501	SF3B3	99	91.362	ENSXETG00000032869	SF3B3	98	91.362	Xenopus_tropicalis
ENSLACG00000012501	SF3B3	77	89.807	ENSXCOG00000013628	sf3b3	95	89.807	Xiphophorus_couchianus
ENSLACG00000012501	SF3B3	99	89.701	ENSXMAG00000006334	sf3b3	98	89.701	Xiphophorus_maculatus