EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000012674 (Gene tree)
Gene ID: 102348731
Gene Symbol: si:dkey-34d22.5
Alias: zgc:112009
Full Name: ras-related protein Rab-39B-like
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 6623 bases
Position: chrJH126714.1:749397-756019
Accession: 102348731
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000014400	MMR_HSR1	PF01926.23	6.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000014500	-	988	XM_005993124	ENSLACP00000014400	210 (aa)	XP_005993186	H3AXM9

Gene Model

Click here to download ENSLACG00000012674's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000012674's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000012674	si:dkey-34d22.5	76	45.000	ENSLACG00000006407	RAB30	78	45.000
ENSLACG00000012674	si:dkey-34d22.5	82	40.462	ENSLACG00000011380	rab11al	79	40.462
ENSLACG00000012674	si:dkey-34d22.5	92	34.021	ENSLACG00000007092	RAB22A	97	34.021
ENSLACG00000012674	si:dkey-34d22.5	96	34.328	ENSLACG00000011157	RAB25	92	34.328
ENSLACG00000012674	si:dkey-34d22.5	78	39.877	ENSLACG00000016974	RAB11B	94	39.877
ENSLACG00000012674	si:dkey-34d22.5	79	40.120	ENSLACG00000011256	rab18b	80	40.120
ENSLACG00000012674	si:dkey-34d22.5	76	30.178	ENSLACG00000014614	si:dkey-27j5.5	62	30.178
ENSLACG00000012674	si:dkey-34d22.5	94	38.071	ENSLACG00000012869	RAB1A	94	38.071
ENSLACG00000012674	si:dkey-34d22.5	84	38.764	ENSLACG00000004663	RAB5A	81	38.764
ENSLACG00000012674	si:dkey-34d22.5	70	34.014	ENSLACG00000012088	rheb	79	34.014
ENSLACG00000012674	si:dkey-34d22.5	94	37.056	ENSLACG00000012717	RAB1B	96	37.056
ENSLACG00000012674	si:dkey-34d22.5	87	37.705	ENSLACG00000016857	-	83	37.705
ENSLACG00000012674	si:dkey-34d22.5	63	31.579	ENSLACG00000018793	RAN	88	31.579
ENSLACG00000012674	si:dkey-34d22.5	53	37.500	ENSLACG00000010885	-	89	34.307
ENSLACG00000012674	si:dkey-34d22.5	82	31.609	ENSLACG00000016958	-	84	31.250
ENSLACG00000012674	si:dkey-34d22.5	100	53.521	ENSLACG00000016074	RAB39B	100	53.521
ENSLACG00000012674	si:dkey-34d22.5	75	32.704	ENSLACG00000014985	RAP2B	93	32.370
ENSLACG00000012674	si:dkey-34d22.5	95	32.500	ENSLACG00000010461	RAB12	79	32.500
ENSLACG00000012674	si:dkey-34d22.5	79	33.133	ENSLACG00000013122	RRAS2	81	33.133
ENSLACG00000012674	si:dkey-34d22.5	72	35.099	ENSLACG00000017464	KRAS	90	33.526
ENSLACG00000012674	si:dkey-34d22.5	79	40.120	ENSLACG00000009310	rab18a	80	40.120
ENSLACG00000012674	si:dkey-34d22.5	79	32.544	ENSLACG00000002523	RAB29	82	32.544
ENSLACG00000012674	si:dkey-34d22.5	78	33.929	ENSLACG00000017799	RAB36	62	33.929
ENSLACG00000012674	si:dkey-34d22.5	98	36.408	ENSLACG00000012184	RAB11A	95	36.408
ENSLACG00000012674	si:dkey-34d22.5	74	35.897	ENSLACG00000003722	rabl2	67	35.897
ENSLACG00000012674	si:dkey-34d22.5	74	38.462	ENSLACG00000022111	-	77	38.462
ENSLACG00000012674	si:dkey-34d22.5	97	32.857	ENSLACG00000005168	RAB6A	94	32.857
ENSLACG00000012674	si:dkey-34d22.5	89	39.247	ENSLACG00000012521	RAB2A	87	39.247
ENSLACG00000012674	si:dkey-34d22.5	75	39.873	ENSLACG00000014446	RAB2B	95	39.873
ENSLACG00000012674	si:dkey-34d22.5	84	34.463	ENSLACG00000008103	-	98	34.463
ENSLACG00000012674	si:dkey-34d22.5	80	30.769	ENSLACG00000017138	RRAS	96	30.769
ENSLACG00000012674	si:dkey-34d22.5	80	35.465	ENSLACG00000008809	zgc:100918	83	35.465
ENSLACG00000012674	si:dkey-34d22.5	52	40.909	ENSLACG00000018444	RAB35	54	40.909
ENSLACG00000012674	si:dkey-34d22.5	78	38.323	ENSLACG00000017891	RAB9B	77	38.554
ENSLACG00000012674	si:dkey-34d22.5	78	34.337	ENSLACG00000001081	RAB34	64	34.337
ENSLACG00000012674	si:dkey-34d22.5	72	32.895	ENSLACG00000010042	-	88	30.645
ENSLACG00000012674	si:dkey-34d22.5	100	58.333	ENSLACG00000012755	-	100	58.333
ENSLACG00000012674	si:dkey-34d22.5	78	39.634	ENSLACG00000013980	rab41	77	39.634
ENSLACG00000012674	si:dkey-34d22.5	80	34.884	ENSLACG00000015770	RAB7A	83	34.884
ENSLACG00000012674	si:dkey-34d22.5	70	43.624	ENSLACG00000011557	zgc:101559	64	43.624
ENSLACG00000012674	si:dkey-34d22.5	70	42.282	ENSLACG00000013571	RAB33B	64	42.282
ENSLACG00000012674	si:dkey-34d22.5	98	37.619	ENSLACG00000011181	RAB14	97	37.619
ENSLACG00000012674	si:dkey-34d22.5	70	37.838	ENSLACG00000004025	RAB23	66	36.875
ENSLACG00000012674	si:dkey-34d22.5	81	31.429	ENSLACG00000018428	NRAS	97	31.016
ENSLACG00000012674	si:dkey-34d22.5	72	35.762	ENSLACG00000018427	HRAS	85	34.756
ENSLACG00000012674	si:dkey-34d22.5	100	54.930	ENSLACG00000002332	-	100	54.930

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000012674	si:dkey-34d22.5	92	62.755	ENSACIG00000016958	si:dkey-34d22.5	88	62.755	Amphilophus_citrinellus
ENSLACG00000012674	si:dkey-34d22.5	99	59.174	ENSATEG00000010784	si:dkey-34d22.5	84	59.174	Anabas_testudineus
ENSLACG00000012674	si:dkey-34d22.5	100	59.535	ENSCPBG00000011236	-	100	59.535	Chrysemys_picta_bellii
ENSLACG00000012674	si:dkey-34d22.5	92	59.487	ENSCSEG00000019183	si:dkey-34d22.5	88	59.487	Cynoglossus_semilaevis
ENSLACG00000012674	si:dkey-34d22.5	92	62.755	ENSCVAG00000017064	si:dkey-34d22.5	88	62.755	Cyprinodon_variegatus
ENSLACG00000012674	si:dkey-34d22.5	87	43.407	ENSDARG00000100379	si:dkey-34d22.2	98	43.407	Danio_rerio
ENSLACG00000012674	si:dkey-34d22.5	98	61.429	ENSFALG00000001373	-	98	61.429	Ficedula_albicollis
ENSLACG00000012674	si:dkey-34d22.5	90	64.583	ENSFHEG00000012041	si:dkey-34d22.5	86	64.583	Fundulus_heteroclitus
ENSLACG00000012674	si:dkey-34d22.5	92	63.731	ENSGALG00000000994	-	91	63.731	Gallus_gallus
ENSLACG00000012674	si:dkey-34d22.5	99	58.716	ENSGAFG00000008183	si:dkey-34d22.5	98	58.716	Gambusia_affinis
ENSLACG00000012674	si:dkey-34d22.5	94	58.128	ENSGAGG00000004918	-	100	58.128	Gopherus_agassizii
ENSLACG00000012674	si:dkey-34d22.5	90	65.969	ENSHCOG00000015692	si:dkey-34d22.5	88	65.969	Hippocampus_comes
ENSLACG00000012674	si:dkey-34d22.5	92	63.776	ENSKMAG00000012778	si:dkey-34d22.5	88	63.776	Kryptolebias_marmoratus
ENSLACG00000012674	si:dkey-34d22.5	99	57.798	ENSLBEG00000002926	si:dkey-34d22.5	99	57.798	Labrus_bergylta
ENSLACG00000012674	si:dkey-34d22.5	100	58.986	ENSLOCG00000003467	si:dkey-34d22.5	100	58.986	Lepisosteus_oculatus
ENSLACG00000012674	si:dkey-34d22.5	99	60.648	ENSMMOG00000006846	si:dkey-34d22.5	98	60.648	Mola_mola
ENSLACG00000012674	si:dkey-34d22.5	99	57.339	ENSMALG00000013152	si:dkey-34d22.5	98	57.339	Monopterus_albus
ENSLACG00000012674	si:dkey-34d22.5	99	59.535	ENSORLG00000014099	si:dkey-34d22.5	98	59.535	Oryzias_latipes
ENSLACG00000012674	si:dkey-34d22.5	99	59.535	ENSORLG00020020277	si:dkey-34d22.5	98	59.535	Oryzias_latipes_hni
ENSLACG00000012674	si:dkey-34d22.5	99	59.070	ENSORLG00015000142	si:dkey-34d22.5	98	59.070	Oryzias_latipes_hsok
ENSLACG00000012674	si:dkey-34d22.5	92	63.265	ENSOMEG00000017958	si:dkey-34d22.5	89	63.265	Oryzias_melastigma
ENSLACG00000012674	si:dkey-34d22.5	99	56.682	ENSPKIG00000021209	si:dkey-34d22.5	99	56.682	Paramormyrops_kingsleyae
ENSLACG00000012674	si:dkey-34d22.5	99	62.201	ENSPSIG00000006606	-	99	62.201	Pelodiscus_sinensis
ENSLACG00000012674	si:dkey-34d22.5	92	68.367	ENSPMGG00000001298	-	89	68.367	Periophthalmus_magnuspinnatus
ENSLACG00000012674	si:dkey-34d22.5	100	61.215	ENSPCIG00000022399	-	97	61.215	Phascolarctos_cinereus
ENSLACG00000012674	si:dkey-34d22.5	99	58.716	ENSPFOG00000014499	si:dkey-34d22.5	98	58.716	Poecilia_formosa
ENSLACG00000012674	si:dkey-34d22.5	99	58.716	ENSPLAG00000007773	si:dkey-34d22.5	98	58.716	Poecilia_latipinna
ENSLACG00000012674	si:dkey-34d22.5	99	58.716	ENSPMEG00000012932	si:dkey-34d22.5	98	58.716	Poecilia_mexicana
ENSLACG00000012674	si:dkey-34d22.5	100	58.216	ENSSHAG00000008520	-	97	58.216	Sarcophilus_harrisii
ENSLACG00000012674	si:dkey-34d22.5	99	57.674	ENSSFOG00015012088	rab42	96	57.674	Scleropages_formosus
ENSLACG00000012674	si:dkey-34d22.5	92	63.265	ENSSLDG00000002646	si:dkey-34d22.5	88	63.265	Seriola_lalandi_dorsalis
ENSLACG00000012674	si:dkey-34d22.5	92	63.265	ENSSPAG00000012955	si:dkey-34d22.5	88	63.265	Stegastes_partitus
ENSLACG00000012674	si:dkey-34d22.5	100	44.762	ENSXETG00000020622	rab39a	100	44.762	Xenopus_tropicalis
ENSLACG00000012674	si:dkey-34d22.5	99	58.257	ENSXCOG00000008410	si:dkey-34d22.5	98	58.257	Xiphophorus_couchianus
ENSLACG00000012674	si:dkey-34d22.5	99	58.257	ENSXMAG00000029317	si:dkey-34d22.5	98	58.257	Xiphophorus_maculatus