EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000013227 (Gene tree)
Gene ID: 102362332
Gene Symbol: TRNT1
Alias: CCA1|CGI-47|MtCCA
Full Name: tRNA nucleotidyl transferase 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 17234 bases
Position: chrJH127297.1:822998-840231
Accession: 102362332
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000015034	PolyA_pol	PF01743.20	4.2e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000015139	TRNT1-201	2741	XM_006001802	ENSLACP00000015034	434 (aa)	XP_006001864	H3AZG3

Gene Model

Click here to download ENSLACG00000013227's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000013227's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000013227	TRNT1	96	73.735	ENSG00000072756	TRNT1	96	73.735	Homo_sapiens
ENSLACG00000013227	TRNT1	94	71.324	ENSAPOG00000013687	trnt1	96	71.324	Acanthochromis_polyacanthus
ENSLACG00000013227	TRNT1	99	70.805	ENSAMEG00000014520	TRNT1	99	70.805	Ailuropoda_melanoleuca
ENSLACG00000013227	TRNT1	94	72.236	ENSACIG00000021706	trnt1	96	72.236	Amphilophus_citrinellus
ENSLACG00000013227	TRNT1	94	71.253	ENSAOCG00000024612	trnt1	95	71.253	Amphiprion_ocellaris
ENSLACG00000013227	TRNT1	94	64.039	ENSAPEG00000022627	trnt1	94	64.039	Amphiprion_percula
ENSLACG00000013227	TRNT1	93	73.632	ENSATEG00000008928	trnt1	99	73.632	Anabas_testudineus
ENSLACG00000013227	TRNT1	93	72.772	ENSAPLG00000004258	TRNT1	100	72.772	Anas_platyrhynchos
ENSLACG00000013227	TRNT1	97	69.740	ENSACAG00000005657	TRNT1	97	69.740	Anolis_carolinensis
ENSLACG00000013227	TRNT1	99	71.230	ENSANAG00000024802	TRNT1	99	71.230	Aotus_nancymaae
ENSLACG00000013227	TRNT1	94	71.499	ENSACLG00000022227	trnt1	95	71.499	Astatotilapia_calliptera
ENSLACG00000013227	TRNT1	97	70.309	ENSAMXG00000003960	trnt1	98	70.309	Astyanax_mexicanus
ENSLACG00000013227	TRNT1	96	73.012	ENSBTAG00000019534	TRNT1	96	73.012	Bos_taurus
ENSLACG00000013227	TRNT1	92	44.039	WBGene00010089	hpo-31	93	44.039	Caenorhabditis_elegans
ENSLACG00000013227	TRNT1	99	70.998	ENSCJAG00000015466	TRNT1	99	70.998	Callithrix_jacchus
ENSLACG00000013227	TRNT1	96	73.381	ENSCAFG00000005985	TRNT1	96	73.381	Canis_familiaris
ENSLACG00000013227	TRNT1	96	73.381	ENSCAFG00020014746	TRNT1	96	73.381	Canis_lupus_dingo
ENSLACG00000013227	TRNT1	96	73.735	ENSCHIG00000007030	TRNT1	95	73.735	Capra_hircus
ENSLACG00000013227	TRNT1	99	71.659	ENSTSYG00000013390	TRNT1	100	71.659	Carlito_syrichta
ENSLACG00000013227	TRNT1	87	60.317	ENSCAPG00000006891	TRNT1	100	60.317	Cavia_aperea
ENSLACG00000013227	TRNT1	99	71.824	ENSCPOG00000007849	TRNT1	100	70.896	Cavia_porcellus
ENSLACG00000013227	TRNT1	95	72.048	ENSCCAG00000002919	TRNT1	99	73.671	Cebus_capucinus
ENSLACG00000013227	TRNT1	95	74.396	ENSCATG00000031985	TRNT1	94	74.396	Cercocebus_atys
ENSLACG00000013227	TRNT1	99	72.517	ENSCLAG00000005186	TRNT1	95	78.325	Chinchilla_lanigera
ENSLACG00000013227	TRNT1	99	71.824	ENSCSAG00000011052	TRNT1	99	71.824	Chlorocebus_sabaeus
ENSLACG00000013227	TRNT1	80	81.421	ENSCHOG00000005712	TRNT1	80	81.421	Choloepus_hoffmanni
ENSLACG00000013227	TRNT1	94	75.854	ENSCPBG00000017636	TRNT1	94	75.854	Chrysemys_picta_bellii
ENSLACG00000013227	TRNT1	93	44.554	ENSCING00000007069	-	99	44.554	Ciona_intestinalis
ENSLACG00000013227	TRNT1	92	44.417	ENSCSAVG00000007494	-	95	44.417	Ciona_savignyi
ENSLACG00000013227	TRNT1	96	74.217	ENSCANG00000039030	TRNT1	96	74.217	Colobus_angolensis_palliatus
ENSLACG00000013227	TRNT1	96	73.253	ENSCGRG00001009998	Trnt1	96	73.253	Cricetulus_griseus_chok1gshd
ENSLACG00000013227	TRNT1	96	73.253	ENSCGRG00000013410	Trnt1	88	81.283	Cricetulus_griseus_crigri
ENSLACG00000013227	TRNT1	98	68.160	ENSCSEG00000008157	trnt1	99	68.160	Cynoglossus_semilaevis
ENSLACG00000013227	TRNT1	94	71.007	ENSCVAG00000019770	trnt1	96	71.007	Cyprinodon_variegatus
ENSLACG00000013227	TRNT1	96	72.596	ENSDARG00000075297	trnt1	97	72.596	Danio_rerio
ENSLACG00000013227	TRNT1	95	72.464	ENSDNOG00000008837	TRNT1	95	72.464	Dasypus_novemcinctus
ENSLACG00000013227	TRNT1	95	75.182	ENSDORG00000014035	Trnt1	95	75.182	Dipodomys_ordii
ENSLACG00000013227	TRNT1	93	49.029	FBgn0037369	CG2100	84	49.029	Drosophila_melanogaster
ENSLACG00000013227	TRNT1	57	77.823	ENSETEG00000018177	TRNT1	99	77.823	Echinops_telfairi
ENSLACG00000013227	TRNT1	93	63.704	ENSEBUG00000012779	-	95	63.704	Eptatretus_burgeri
ENSLACG00000013227	TRNT1	95	74.696	ENSEASG00005003577	TRNT1	95	74.696	Equus_asinus_asinus
ENSLACG00000013227	TRNT1	95	74.939	ENSECAG00000014420	TRNT1	95	74.939	Equus_caballus
ENSLACG00000013227	TRNT1	94	73.902	ENSEEUG00000009567	TRNT1	94	73.902	Erinaceus_europaeus
ENSLACG00000013227	TRNT1	97	70.000	ENSELUG00000003802	trnt1	98	70.000	Esox_lucius
ENSLACG00000013227	TRNT1	96	72.662	ENSFCAG00000026805	TRNT1	96	72.662	Felis_catus
ENSLACG00000013227	TRNT1	89	75.065	ENSFALG00000013539	TRNT1	100	75.065	Ficedula_albicollis
ENSLACG00000013227	TRNT1	99	71.860	ENSFDAG00000018412	TRNT1	99	71.860	Fukomys_damarensis
ENSLACG00000013227	TRNT1	96	70.361	ENSFHEG00000019294	trnt1	98	70.361	Fundulus_heteroclitus
ENSLACG00000013227	TRNT1	94	70.025	ENSGMOG00000007460	trnt1	96	70.025	Gadus_morhua
ENSLACG00000013227	TRNT1	93	74.321	ENSGALG00000017368	TRNT1	94	74.321	Gallus_gallus
ENSLACG00000013227	TRNT1	96	70.361	ENSGAFG00000008647	trnt1	98	70.361	Gambusia_affinis
ENSLACG00000013227	TRNT1	94	70.025	ENSGACG00000011903	trnt1	95	70.604	Gasterosteus_aculeatus
ENSLACG00000013227	TRNT1	96	74.880	ENSGAGG00000020942	TRNT1	95	74.880	Gopherus_agassizii
ENSLACG00000013227	TRNT1	96	73.735	ENSGGOG00000015286	TRNT1	96	73.735	Gorilla_gorilla
ENSLACG00000013227	TRNT1	94	71.499	ENSHBUG00000002797	trnt1	95	71.499	Haplochromis_burtoni
ENSLACG00000013227	TRNT1	98	66.824	ENSHGLG00000000221	-	98	66.824	Heterocephalus_glaber_female
ENSLACG00000013227	TRNT1	99	72.055	ENSHGLG00000003649	TRNT1	99	72.055	Heterocephalus_glaber_female
ENSLACG00000013227	TRNT1	99	70.901	ENSHGLG00100016421	TRNT1	99	70.901	Heterocephalus_glaber_male
ENSLACG00000013227	TRNT1	94	70.025	ENSHCOG00000010618	trnt1	95	70.025	Hippocampus_comes
ENSLACG00000013227	TRNT1	98	70.824	ENSIPUG00000000971	trnt1	98	70.824	Ictalurus_punctatus
ENSLACG00000013227	TRNT1	99	70.183	ENSSTOG00000000150	TRNT1	89	83.696	Ictidomys_tridecemlineatus
ENSLACG00000013227	TRNT1	99	71.296	ENSJJAG00000018561	Trnt1	99	71.296	Jaculus_jaculus
ENSLACG00000013227	TRNT1	96	69.880	ENSKMAG00000011307	trnt1	97	69.880	Kryptolebias_marmoratus
ENSLACG00000013227	TRNT1	92	64.750	ENSLBEG00000019457	trnt1	94	64.750	Labrus_bergylta
ENSLACG00000013227	TRNT1	99	74.014	ENSLOCG00000011105	trnt1	99	74.014	Lepisosteus_oculatus
ENSLACG00000013227	TRNT1	99	71.594	ENSLAFG00000023191	TRNT1	99	71.594	Loxodonta_africana
ENSLACG00000013227	TRNT1	95	74.638	ENSMFAG00000045113	TRNT1	94	74.638	Macaca_fascicularis
ENSLACG00000013227	TRNT1	95	74.638	ENSMMUG00000017983	TRNT1	94	74.638	Macaca_mulatta
ENSLACG00000013227	TRNT1	95	74.638	ENSMNEG00000037805	TRNT1	94	74.638	Macaca_nemestrina
ENSLACG00000013227	TRNT1	88	76.115	ENSMLEG00000033671	TRNT1	99	76.115	Mandrillus_leucophaeus
ENSLACG00000013227	TRNT1	94	70.762	ENSMAMG00000023401	trnt1	95	70.762	Mastacembelus_armatus
ENSLACG00000013227	TRNT1	94	71.499	ENSMZEG00005009141	trnt1	95	71.499	Maylandia_zebra
ENSLACG00000013227	TRNT1	74	71.963	ENSMGAG00000009971	TRNT1	100	71.963	Meleagris_gallopavo
ENSLACG00000013227	TRNT1	96	73.494	ENSMAUG00000020707	Trnt1	96	73.494	Mesocricetus_auratus
ENSLACG00000013227	TRNT1	99	72.558	ENSMICG00000016615	TRNT1	99	72.558	Microcebus_murinus
ENSLACG00000013227	TRNT1	96	73.494	ENSMOCG00000004539	Trnt1	96	73.494	Microtus_ochrogaster
ENSLACG00000013227	TRNT1	97	67.773	ENSMMOG00000010742	trnt1	98	67.773	Mola_mola
ENSLACG00000013227	TRNT1	96	74.217	ENSMODG00000004368	TRNT1	96	74.217	Monodelphis_domestica
ENSLACG00000013227	TRNT1	94	70.762	ENSMALG00000008376	trnt1	95	70.762	Monopterus_albus
ENSLACG00000013227	TRNT1	96	73.494	MGP_CAROLIEiJ_G0028698	Trnt1	92	79.518	Mus_caroli
ENSLACG00000013227	TRNT1	96	73.735	ENSMUSG00000013736	Trnt1	96	73.735	Mus_musculus
ENSLACG00000013227	TRNT1	96	74.217	MGP_PahariEiJ_G0022449	Trnt1	91	84.239	Mus_pahari
ENSLACG00000013227	TRNT1	96	73.494	MGP_SPRETEiJ_G0029726	Trnt1	96	73.494	Mus_spretus
ENSLACG00000013227	TRNT1	96	73.141	ENSMPUG00000017017	TRNT1	96	73.141	Mustela_putorius_furo
ENSLACG00000013227	TRNT1	89	72.468	ENSMLUG00000011864	TRNT1	99	72.468	Myotis_lucifugus
ENSLACG00000013227	TRNT1	95	73.723	ENSNGAG00000000537	Trnt1	95	73.723	Nannospalax_galili
ENSLACG00000013227	TRNT1	76	72.256	ENSNBRG00000023606	trnt1	95	72.256	Neolamprologus_brichardi
ENSLACG00000013227	TRNT1	99	71.926	ENSNLEG00000003226	TRNT1	99	71.926	Nomascus_leucogenys
ENSLACG00000013227	TRNT1	96	73.494	ENSMEUG00000004684	TRNT1	96	73.494	Notamacropus_eugenii
ENSLACG00000013227	TRNT1	88	68.668	ENSOPRG00000015067	TRNT1	99	68.668	Ochotona_princeps
ENSLACG00000013227	TRNT1	99	72.979	ENSODEG00000007597	TRNT1	99	72.979	Octodon_degus
ENSLACG00000013227	TRNT1	94	72.236	ENSONIG00000020273	trnt1	94	72.236	Oreochromis_niloticus
ENSLACG00000013227	TRNT1	93	71.605	ENSOANG00000007514	TRNT1	94	71.605	Ornithorhynchus_anatinus
ENSLACG00000013227	TRNT1	96	71.770	ENSOCUG00000008580	TRNT1	97	71.770	Oryctolagus_cuniculus
ENSLACG00000013227	TRNT1	94	69.438	ENSORLG00000003165	trnt1	97	69.438	Oryzias_latipes
ENSLACG00000013227	TRNT1	94	69.193	ENSORLG00020022060	trnt1	97	69.193	Oryzias_latipes_hni
ENSLACG00000013227	TRNT1	94	68.949	ENSORLG00015018915	trnt1	96	68.949	Oryzias_latipes_hsok
ENSLACG00000013227	TRNT1	95	67.070	ENSOMEG00000003331	trnt1	98	67.070	Oryzias_melastigma
ENSLACG00000013227	TRNT1	96	73.735	ENSOARG00000008631	TRNT1	95	73.735	Ovis_aries
ENSLACG00000013227	TRNT1	96	73.735	ENSPPAG00000043566	TRNT1	96	73.735	Pan_paniscus
ENSLACG00000013227	TRNT1	96	72.422	ENSPPRG00000001327	TRNT1	96	72.422	Panthera_pardus
ENSLACG00000013227	TRNT1	96	72.422	ENSPTIG00000011448	TRNT1	96	72.422	Panthera_tigris_altaica
ENSLACG00000013227	TRNT1	96	73.735	ENSPTRG00000014564	TRNT1	96	73.735	Pan_troglodytes
ENSLACG00000013227	TRNT1	95	74.396	ENSPANG00000025944	TRNT1	94	74.396	Papio_anubis
ENSLACG00000013227	TRNT1	94	73.350	ENSPKIG00000020015	trnt1	95	73.350	Paramormyrops_kingsleyae
ENSLACG00000013227	TRNT1	91	73.804	ENSPSIG00000017356	TRNT1	99	76.257	Pelodiscus_sinensis
ENSLACG00000013227	TRNT1	94	71.078	ENSPMGG00000008888	trnt1	94	71.078	Periophthalmus_magnuspinnatus
ENSLACG00000013227	TRNT1	96	73.012	ENSPEMG00000019845	Trnt1	96	73.012	Peromyscus_maniculatus_bairdii
ENSLACG00000013227	TRNT1	96	74.940	ENSPCIG00000030436	TRNT1	96	74.940	Phascolarctos_cinereus
ENSLACG00000013227	TRNT1	96	71.084	ENSPFOG00000006194	trnt1	97	71.084	Poecilia_formosa
ENSLACG00000013227	TRNT1	94	71.990	ENSPLAG00000015623	trnt1	99	71.891	Poecilia_latipinna
ENSLACG00000013227	TRNT1	96	70.602	ENSPMEG00000012216	trnt1	99	71.393	Poecilia_mexicana
ENSLACG00000013227	TRNT1	96	70.843	ENSPREG00000021470	trnt1	98	70.843	Poecilia_reticulata
ENSLACG00000013227	TRNT1	99	71.462	ENSPPYG00000013702	TRNT1	99	71.462	Pongo_abelii
ENSLACG00000013227	TRNT1	88	75.979	ENSPCAG00000001951	TRNT1	100	75.979	Procavia_capensis
ENSLACG00000013227	TRNT1	99	72.286	ENSPCOG00000022228	TRNT1	99	72.286	Propithecus_coquereli
ENSLACG00000013227	TRNT1	88	73.958	ENSPVAG00000008784	TRNT1	100	73.958	Pteropus_vampyrus
ENSLACG00000013227	TRNT1	94	71.499	ENSPNYG00000003120	trnt1	95	71.499	Pundamilia_nyererei
ENSLACG00000013227	TRNT1	97	70.449	ENSPNAG00000000565	trnt1	98	70.449	Pygocentrus_nattereri
ENSLACG00000013227	TRNT1	96	73.494	ENSRNOG00000006432	Trnt1	96	73.494	Rattus_norvegicus
ENSLACG00000013227	TRNT1	96	72.530	ENSRBIG00000042632	TRNT1	96	72.530	Rhinopithecus_bieti
ENSLACG00000013227	TRNT1	96	73.735	ENSRROG00000036866	TRNT1	96	73.735	Rhinopithecus_roxellana
ENSLACG00000013227	TRNT1	99	70.766	ENSSBOG00000021208	TRNT1	99	70.766	Saimiri_boliviensis_boliviensis
ENSLACG00000013227	TRNT1	95	74.939	ENSSHAG00000018861	TRNT1	95	74.939	Sarcophilus_harrisii
ENSLACG00000013227	TRNT1	98	70.423	ENSSFOG00015020844	trnt1	99	70.423	Scleropages_formosus
ENSLACG00000013227	TRNT1	95	69.830	ENSSMAG00000015432	trnt1	94	69.830	Scophthalmus_maximus
ENSLACG00000013227	TRNT1	94	71.253	ENSSDUG00000012320	trnt1	96	71.253	Seriola_dumerili
ENSLACG00000013227	TRNT1	56	65.560	ENSSLDG00000016463	-	91	65.690	Seriola_lalandi_dorsalis
ENSLACG00000013227	TRNT1	94	70.762	ENSSLDG00000009325	trnt1	96	70.762	Seriola_lalandi_dorsalis
ENSLACG00000013227	TRNT1	88	76.042	ENSSPUG00000014153	TRNT1	100	76.042	Sphenodon_punctatus
ENSLACG00000013227	TRNT1	93	69.877	ENSSPAG00000021005	trnt1	95	69.877	Stegastes_partitus
ENSLACG00000013227	TRNT1	96	73.735	ENSSSCG00000011529	TRNT1	96	73.735	Sus_scrofa
ENSLACG00000013227	TRNT1	94	73.645	ENSTGUG00000010192	TRNT1	100	73.645	Taeniopygia_guttata
ENSLACG00000013227	TRNT1	94	69.756	ENSTRUG00000001088	trnt1	96	69.756	Takifugu_rubripes
ENSLACG00000013227	TRNT1	98	68.471	ENSTNIG00000007363	trnt1	98	68.471	Tetraodon_nigroviridis
ENSLACG00000013227	TRNT1	61	62.782	ENSTBEG00000006367	TRNT1	87	62.782	Tupaia_belangeri
ENSLACG00000013227	TRNT1	95	73.723	ENSTTRG00000007803	TRNT1	95	73.723	Tursiops_truncatus
ENSLACG00000013227	TRNT1	99	70.642	ENSUAMG00000022574	TRNT1	100	70.642	Ursus_americanus
ENSLACG00000013227	TRNT1	99	70.872	ENSUMAG00000024092	TRNT1	100	70.872	Ursus_maritimus
ENSLACG00000013227	TRNT1	96	73.381	ENSVVUG00000012810	TRNT1	96	73.381	Vulpes_vulpes
ENSLACG00000013227	TRNT1	94	64.146	ENSXETG00000025091	trnt1	99	64.516	Xenopus_tropicalis
ENSLACG00000013227	TRNT1	96	71.325	ENSXCOG00000010150	trnt1	98	71.325	Xiphophorus_couchianus
ENSLACG00000013227	TRNT1	96	71.084	ENSXMAG00000002227	trnt1	98	71.084	Xiphophorus_maculatus