EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000013434 (Gene tree)
Gene ID: 102353858
Gene Symbol: SLIRP
Alias: C14orf156|DC50
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 8174 bases
Position: chrJH126618.1:858356-866529
Accession: 102353858
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000015262	RRM_1	PF00076.22	1.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000015368	SLIRP-201	2416	XM_005990083	ENSLACP00000015262	104 (aa)	XP_005990145	H3B041

Gene Model

Click here to download ENSLACG00000013434's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000013434's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000013434	SLIRP	72	30.000	ENSLACG00000009899	zgc:165603	61	30.000
ENSLACG00000013434	SLIRP	80	30.488	ENSLACG00000015227	HNRNPAB	50	30.488

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000013434	SLIRP	87	53.333	ENSG00000119705	SLIRP	93	61.972	Homo_sapiens
ENSLACG00000013434	SLIRP	93	72.165	ENSAPOG00000001298	slirp	97	72.165	Acanthochromis_polyacanthus
ENSLACG00000013434	SLIRP	67	57.143	ENSAMEG00000003975	SLIRP	77	57.143	Ailuropoda_melanoleuca
ENSLACG00000013434	SLIRP	91	72.632	ENSACIG00000023083	slirp	94	72.632	Amphilophus_citrinellus
ENSLACG00000013434	SLIRP	91	73.684	ENSAOCG00000006342	slirp	96	73.684	Amphiprion_ocellaris
ENSLACG00000013434	SLIRP	91	73.684	ENSAPEG00000015719	-	97	73.684	Amphiprion_percula
ENSLACG00000013434	SLIRP	91	73.684	ENSAPEG00000015917	slirp	96	73.684	Amphiprion_percula
ENSLACG00000013434	SLIRP	90	72.340	ENSATEG00000013525	slirp	94	72.340	Anabas_testudineus
ENSLACG00000013434	SLIRP	96	59.000	ENSAMXG00000018693	slirp	100	59.000	Astyanax_mexicanus
ENSLACG00000013434	SLIRP	72	56.000	ENSCJAG00000016946	SLIRP	74	56.522	Callithrix_jacchus
ENSLACG00000013434	SLIRP	87	53.846	ENSCAFG00020015876	-	82	53.846	Canis_lupus_dingo
ENSLACG00000013434	SLIRP	87	50.000	ENSCCAG00000030130	SLIRP	81	50.000	Cebus_capucinus
ENSLACG00000013434	SLIRP	86	55.056	ENSCATG00000036327	SLIRP	81	55.056	Cercocebus_atys
ENSLACG00000013434	SLIRP	86	55.056	ENSCSAG00000011736	SLIRP	82	54.444	Chlorocebus_sabaeus
ENSLACG00000013434	SLIRP	86	64.045	ENSCPBG00000026327	SLIRP	88	64.045	Chrysemys_picta_bellii
ENSLACG00000013434	SLIRP	66	62.319	ENSCANG00000032892	SLIRP	71	61.429	Colobus_angolensis_palliatus
ENSLACG00000013434	SLIRP	96	48.039	ENSCGRG00001024068	Slirp	92	48.039	Cricetulus_griseus_chok1gshd
ENSLACG00000013434	SLIRP	96	48.039	ENSCGRG00000017440	Slirp	92	48.039	Cricetulus_griseus_crigri
ENSLACG00000013434	SLIRP	81	58.333	ENSCSEG00000015766	slirp	86	58.333	Cynoglossus_semilaevis
ENSLACG00000013434	SLIRP	87	76.667	ENSCVAG00000012504	slirp	86	76.667	Cyprinodon_variegatus
ENSLACG00000013434	SLIRP	88	76.923	ENSDARG00000097753	slirp	91	76.596	Danio_rerio
ENSLACG00000013434	SLIRP	89	43.011	ENSDNOG00000007721	SLIRP	85	43.011	Dasypus_novemcinctus
ENSLACG00000013434	SLIRP	83	49.425	ENSDORG00000012379	Slirp	78	49.425	Dipodomys_ordii
ENSLACG00000013434	SLIRP	86	47.191	ENSETEG00000010345	SLIRP	77	47.191	Echinops_telfairi
ENSLACG00000013434	SLIRP	87	52.747	ENSEASG00005020193	SLIRP	82	52.747	Equus_asinus_asinus
ENSLACG00000013434	SLIRP	87	46.667	ENSEEUG00000007257	SLIRP	89	46.667	Erinaceus_europaeus
ENSLACG00000013434	SLIRP	95	67.677	ENSELUG00000016800	slirp	98	67.677	Esox_lucius
ENSLACG00000013434	SLIRP	68	54.930	ENSFCAG00000036326	SLIRP	72	54.930	Felis_catus
ENSLACG00000013434	SLIRP	75	58.974	ENSFALG00000012583	SLIRP	75	57.500	Ficedula_albicollis
ENSLACG00000013434	SLIRP	82	51.163	ENSFDAG00000008347	SLIRP	76	51.163	Fukomys_damarensis
ENSLACG00000013434	SLIRP	75	66.667	ENSFHEG00000004709	slirp	85	66.667	Fundulus_heteroclitus
ENSLACG00000013434	SLIRP	94	65.306	ENSGMOG00000016948	slirp	94	65.306	Gadus_morhua
ENSLACG00000013434	SLIRP	88	54.255	ENSGALG00000031238	SLIRP	95	54.255	Gallus_gallus
ENSLACG00000013434	SLIRP	91	69.474	ENSGAFG00000010998	slirp	95	69.474	Gambusia_affinis
ENSLACG00000013434	SLIRP	79	75.610	ENSGACG00000020137	slirp	95	75.610	Gasterosteus_aculeatus
ENSLACG00000013434	SLIRP	95	59.406	ENSGAGG00000009953	SLIRP	69	59.406	Gopherus_agassizii
ENSLACG00000013434	SLIRP	87	53.333	ENSGGOG00000011059	-	82	53.333	Gorilla_gorilla
ENSLACG00000013434	SLIRP	86	46.667	ENSHGLG00000018491	SLIRP	81	46.667	Heterocephalus_glaber_female
ENSLACG00000013434	SLIRP	86	46.667	ENSHGLG00100014153	SLIRP	81	46.667	Heterocephalus_glaber_male
ENSLACG00000013434	SLIRP	95	70.707	ENSHCOG00000006795	slirp	100	70.707	Hippocampus_comes
ENSLACG00000013434	SLIRP	95	71.717	ENSIPUG00000010214	SLIRP	99	71.717	Ictalurus_punctatus
ENSLACG00000013434	SLIRP	87	50.549	ENSSTOG00000034316	SLIRP	82	50.549	Ictidomys_tridecemlineatus
ENSLACG00000013434	SLIRP	92	64.583	ENSKMAG00000002038	slirp	92	64.583	Kryptolebias_marmoratus
ENSLACG00000013434	SLIRP	93	58.763	ENSLBEG00000007564	slirp	97	58.763	Labrus_bergylta
ENSLACG00000013434	SLIRP	86	55.056	ENSMFAG00000042960	SLIRP	82	54.444	Macaca_fascicularis
ENSLACG00000013434	SLIRP	87	53.333	ENSMMUG00000029256	SLIRP	81	53.333	Macaca_mulatta
ENSLACG00000013434	SLIRP	86	55.056	ENSMNEG00000028921	SLIRP	82	54.444	Macaca_nemestrina
ENSLACG00000013434	SLIRP	71	56.757	ENSMLEG00000043644	SLIRP	70	59.420	Mandrillus_leucophaeus
ENSLACG00000013434	SLIRP	91	73.684	ENSMZEG00005004617	slirp	96	73.684	Maylandia_zebra
ENSLACG00000013434	SLIRP	87	51.648	ENSMAUG00000003857	Slirp	82	51.648	Mesocricetus_auratus
ENSLACG00000013434	SLIRP	87	52.222	ENSMICG00000012080	SLIRP	81	52.222	Microcebus_murinus
ENSLACG00000013434	SLIRP	83	54.545	ENSMOCG00000016019	Slirp	78	54.545	Microtus_ochrogaster
ENSLACG00000013434	SLIRP	93	73.196	ENSMMOG00000018268	slirp	97	73.196	Mola_mola
ENSLACG00000013434	SLIRP	66	60.870	ENSMODG00000005207	-	97	60.870	Monodelphis_domestica
ENSLACG00000013434	SLIRP	92	67.708	ENSMALG00000012581	slirp	98	67.708	Monopterus_albus
ENSLACG00000013434	SLIRP	83	54.023	MGP_CAROLIEiJ_G0017995	Slirp	81	54.023	Mus_caroli
ENSLACG00000013434	SLIRP	83	54.023	ENSMUSG00000021040	Slirp	78	54.023	Mus_musculus
ENSLACG00000013434	SLIRP	83	54.023	MGP_SPRETEiJ_G0018840	Slirp	78	54.023	Mus_spretus
ENSLACG00000013434	SLIRP	85	52.222	ENSMLUG00000024998	-	88	50.495	Myotis_lucifugus
ENSLACG00000013434	SLIRP	95	49.000	ENSMLUG00000029544	-	88	49.000	Myotis_lucifugus
ENSLACG00000013434	SLIRP	83	49.425	ENSNGAG00000016363	Slirp	84	49.425	Nannospalax_galili
ENSLACG00000013434	SLIRP	87	47.778	ENSNLEG00000032459	-	82	47.778	Nomascus_leucogenys
ENSLACG00000013434	SLIRP	87	47.778	ENSNLEG00000027238	-	79	55.072	Nomascus_leucogenys
ENSLACG00000013434	SLIRP	82	56.977	ENSODEG00000012580	SLIRP	76	60.000	Octodon_degus
ENSLACG00000013434	SLIRP	91	72.632	ENSONIG00000011692	slirp	96	72.632	Oreochromis_niloticus
ENSLACG00000013434	SLIRP	75	63.750	ENSOANG00000022366	SLIRP	72	63.750	Ornithorhynchus_anatinus
ENSLACG00000013434	SLIRP	93	71.134	ENSORLG00000010761	slirp	75	71.134	Oryzias_latipes
ENSLACG00000013434	SLIRP	93	70.103	ENSORLG00020022188	slirp	97	70.103	Oryzias_latipes_hni
ENSLACG00000013434	SLIRP	92	70.833	ENSORLG00015020171	slirp	95	70.833	Oryzias_latipes_hsok
ENSLACG00000013434	SLIRP	93	72.165	ENSOMEG00000019321	slirp	97	72.165	Oryzias_melastigma
ENSLACG00000013434	SLIRP	87	53.333	ENSPPAG00000040710	-	82	53.333	Pan_paniscus
ENSLACG00000013434	SLIRP	67	55.714	ENSPPRG00000014350	SLIRP	71	55.714	Panthera_pardus
ENSLACG00000013434	SLIRP	67	55.714	ENSPTIG00000014196	SLIRP	71	55.714	Panthera_tigris_altaica
ENSLACG00000013434	SLIRP	83	54.651	ENSPTRG00000030691	SLIRP	75	60.000	Pan_troglodytes
ENSLACG00000013434	SLIRP	86	56.180	ENSPANG00000026323	SLIRP	81	56.180	Papio_anubis
ENSLACG00000013434	SLIRP	75	60.256	ENSPKIG00000008831	slirp	76	60.256	Paramormyrops_kingsleyae
ENSLACG00000013434	SLIRP	76	82.278	ENSPMGG00000010541	slirp	91	82.278	Periophthalmus_magnuspinnatus
ENSLACG00000013434	SLIRP	89	47.312	ENSPEMG00000013234	Slirp	76	48.315	Peromyscus_maniculatus_bairdii
ENSLACG00000013434	SLIRP	82	49.412	ENSPMAG00000009355	slirp	94	49.412	Petromyzon_marinus
ENSLACG00000013434	SLIRP	75	51.282	ENSPCIG00000026842	-	84	51.282	Phascolarctos_cinereus
ENSLACG00000013434	SLIRP	92	68.750	ENSPFOG00000006758	slirp	96	68.750	Poecilia_formosa
ENSLACG00000013434	SLIRP	92	68.750	ENSPLAG00000011140	slirp	96	68.750	Poecilia_latipinna
ENSLACG00000013434	SLIRP	92	68.750	ENSPMEG00000019535	slirp	96	68.750	Poecilia_mexicana
ENSLACG00000013434	SLIRP	92	68.750	ENSPREG00000011673	slirp	96	68.750	Poecilia_reticulata
ENSLACG00000013434	SLIRP	87	55.556	ENSPPYG00000006030	SLIRP	82	55.556	Pongo_abelii
ENSLACG00000013434	SLIRP	87	50.000	ENSPCOG00000015159	SLIRP	81	50.000	Propithecus_coquereli
ENSLACG00000013434	SLIRP	92	79.167	ENSPNAG00000008633	slirp	97	79.167	Pygocentrus_nattereri
ENSLACG00000013434	SLIRP	63	63.077	ENSRBIG00000031396	-	65	63.077	Rhinopithecus_bieti
ENSLACG00000013434	SLIRP	86	55.056	ENSRBIG00000032222	-	81	54.444	Rhinopithecus_bieti
ENSLACG00000013434	SLIRP	71	56.757	ENSRBIG00000035817	-	69	56.000	Rhinopithecus_bieti
ENSLACG00000013434	SLIRP	64	61.194	ENSRBIG00000032998	-	62	61.194	Rhinopithecus_bieti
ENSLACG00000013434	SLIRP	68	63.380	ENSRROG00000041312	-	70	63.380	Rhinopithecus_roxellana
ENSLACG00000013434	SLIRP	63	64.615	ENSRROG00000035604	-	65	64.615	Rhinopithecus_roxellana
ENSLACG00000013434	SLIRP	64	62.687	ENSRROG00000017133	-	70	62.687	Rhinopithecus_roxellana
ENSLACG00000013434	SLIRP	86	55.056	ENSRROG00000036656	-	81	54.444	Rhinopithecus_roxellana
ENSLACG00000013434	SLIRP	83	52.326	ENSSBOG00000020014	SLIRP	80	56.579	Saimiri_boliviensis_boliviensis
ENSLACG00000013434	SLIRP	95	60.606	ENSSFOG00015011165	slirp	99	60.606	Scleropages_formosus
ENSLACG00000013434	SLIRP	93	47.475	ENSSMAG00000012930	slirp	97	47.475	Scophthalmus_maximus
ENSLACG00000013434	SLIRP	93	70.103	ENSSDUG00000021883	slirp	64	70.103	Seriola_dumerili
ENSLACG00000013434	SLIRP	93	70.103	ENSSLDG00000023136	slirp	88	70.103	Seriola_lalandi_dorsalis
ENSLACG00000013434	SLIRP	74	70.130	ENSSPUG00000009346	SLIRP	79	70.130	Sphenodon_punctatus
ENSLACG00000013434	SLIRP	93	65.979	ENSSPAG00000013477	slirp	97	65.979	Stegastes_partitus
ENSLACG00000013434	SLIRP	87	49.451	ENSSSCG00000028167	SLIRP	82	49.451	Sus_scrofa
ENSLACG00000013434	SLIRP	75	60.256	ENSTGUG00000012337	SLIRP	88	55.914	Taeniopygia_guttata
ENSLACG00000013434	SLIRP	95	68.000	ENSTRUG00000020127	slirp	99	68.000	Takifugu_rubripes
ENSLACG00000013434	SLIRP	87	52.747	ENSUAMG00000022445	SLIRP	82	52.747	Ursus_americanus
ENSLACG00000013434	SLIRP	87	52.747	ENSUMAG00000007166	SLIRP	82	52.747	Ursus_maritimus
ENSLACG00000013434	SLIRP	87	48.352	ENSVPAG00000001781	SLIRP	81	48.352	Vicugna_pacos
ENSLACG00000013434	SLIRP	87	52.747	ENSVVUG00000004436	SLIRP	82	52.747	Vulpes_vulpes
ENSLACG00000013434	SLIRP	78	81.481	ENSXETG00000030343	SLIRP	91	81.481	Xenopus_tropicalis
ENSLACG00000013434	SLIRP	92	69.792	ENSXCOG00000009422	slirp	96	69.792	Xiphophorus_couchianus
ENSLACG00000013434	SLIRP	92	69.792	ENSXMAG00000015655	slirp	96	69.792	Xiphophorus_maculatus