EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000013753 (Gene tree)
Gene ID: 102347044
Gene Symbol: SNRPC
Alias: U1-C|Yhc1
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 8636 bases
Position: chrJH126587.1:905738-914373
Accession: 102347044
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000015620	zf-U1	PF06220.12	1.1e-22	1	1
ENSLACP00000015621	zf-U1	PF06220.12	7.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000015729	SNRPC-202	543	-	ENSLACP00000015621	180 (aa)	-	H3B150
ENSLACT00000015728	SNRPC-201	3718	XM_005988396	ENSLACP00000015620	184 (aa)	XP_005988458	H3B149

Gene Model

Click here to download ENSLACG00000013753's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000013753's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000013753	SNRPC	89	90.625	ENSG00000124562	SNRPC	100	88.125	Homo_sapiens
ENSLACG00000013753	SNRPC	98	85.311	ENSAMEG00000000963	SNRPC	91	86.905	Ailuropoda_melanoleuca
ENSLACG00000013753	SNRPC	90	90.123	ENSACAG00000015721	SNRPC	89	88.889	Anolis_carolinensis
ENSLACG00000013753	SNRPC	89	90.625	ENSANAG00000019696	-	100	88.125	Aotus_nancymaae
ENSLACG00000013753	SNRPC	88	84.177	ENSANAG00000020588	-	98	77.515	Aotus_nancymaae
ENSLACG00000013753	SNRPC	88	79.114	ENSANAG00000021026	-	100	71.250	Aotus_nancymaae
ENSLACG00000013753	SNRPC	88	66.456	ENSANAG00000021444	-	100	65.625	Aotus_nancymaae
ENSLACG00000013753	SNRPC	88	88.608	ENSANAG00000019157	-	100	85.000	Aotus_nancymaae
ENSLACG00000013753	SNRPC	88	90.506	ENSANAG00000007843	-	100	87.500	Aotus_nancymaae
ENSLACG00000013753	SNRPC	88	91.139	ENSBTAG00000024549	SNRPC	100	88.125	Bos_taurus
ENSLACG00000013753	SNRPC	88	88.608	ENSCJAG00000041822	-	100	85.625	Callithrix_jacchus
ENSLACG00000013753	SNRPC	89	90.625	ENSCJAG00000015321	-	100	88.125	Callithrix_jacchus
ENSLACG00000013753	SNRPC	88	89.873	ENSCJAG00000043055	-	100	86.875	Callithrix_jacchus
ENSLACG00000013753	SNRPC	88	88.608	ENSCAFG00000031775	-	100	85.625	Canis_familiaris
ENSLACG00000013753	SNRPC	88	74.051	ENSCAFG00000025525	-	74	71.186	Canis_familiaris
ENSLACG00000013753	SNRPC	88	91.139	ENSCAFG00020005945	-	100	88.125	Canis_lupus_dingo
ENSLACG00000013753	SNRPC	88	87.975	ENSCAFG00020005758	-	99	86.709	Canis_lupus_dingo
ENSLACG00000013753	SNRPC	88	88.608	ENSCAFG00020017383	-	100	85.625	Canis_lupus_dingo
ENSLACG00000013753	SNRPC	94	76.923	ENSCAFG00020009944	-	67	81.356	Canis_lupus_dingo
ENSLACG00000013753	SNRPC	88	90.506	ENSCHIG00000012087	-	100	87.500	Capra_hircus
ENSLACG00000013753	SNRPC	88	91.139	ENSTSYG00000011216	-	100	88.125	Carlito_syrichta
ENSLACG00000013753	SNRPC	88	72.152	ENSTSYG00000025721	-	76	71.311	Carlito_syrichta
ENSLACG00000013753	SNRPC	86	84.516	ENSTSYG00000029745	-	59	86.555	Carlito_syrichta
ENSLACG00000013753	SNRPC	79	91.608	ENSCAPG00000005161	SNRPC	100	88.811	Cavia_aperea
ENSLACG00000013753	SNRPC	88	91.139	ENSCPOG00000008563	SNRPC	100	88.125	Cavia_porcellus
ENSLACG00000013753	SNRPC	87	71.154	ENSCCAG00000026624	-	64	52.532	Cebus_capucinus
ENSLACG00000013753	SNRPC	87	82.166	ENSCCAG00000022751	-	95	82.166	Cebus_capucinus
ENSLACG00000013753	SNRPC	94	81.065	ENSCCAG00000036059	-	94	79.290	Cebus_capucinus
ENSLACG00000013753	SNRPC	93	88.024	ENSCATG00000035787	SNRPC	100	88.125	Cercocebus_atys
ENSLACG00000013753	SNRPC	89	74.534	ENSCLAG00000010242	-	84	74.101	Chinchilla_lanigera
ENSLACG00000013753	SNRPC	88	91.139	ENSCLAG00000016920	SNRPC	100	88.125	Chinchilla_lanigera
ENSLACG00000013753	SNRPC	89	78.125	ENSCHOG00000011439	SNRPC	93	76.786	Choloepus_hoffmanni
ENSLACG00000013753	SNRPC	88	89.873	ENSCPBG00000027142	SNRPC	100	86.875	Chrysemys_picta_bellii
ENSLACG00000013753	SNRPC	84	49.677	ENSCING00000021229	ci-zf(matrin)-4	51	85.484	Ciona_intestinalis
ENSLACG00000013753	SNRPC	88	91.139	ENSCANG00000028035	SNRPC	100	88.125	Colobus_angolensis_palliatus
ENSLACG00000013753	SNRPC	88	79.747	ENSCGRG00001021483	-	100	74.375	Cricetulus_griseus_chok1gshd
ENSLACG00000013753	SNRPC	88	91.139	ENSCGRG00001009011	-	100	88.125	Cricetulus_griseus_chok1gshd
ENSLACG00000013753	SNRPC	89	90.625	ENSCGRG00000005005	Snrpc	100	88.750	Cricetulus_griseus_crigri
ENSLACG00000013753	SNRPC	88	89.873	ENSDNOG00000034699	-	99	87.500	Dasypus_novemcinctus
ENSLACG00000013753	SNRPC	86	83.871	ENSETEG00000011265	-	76	82.500	Echinops_telfairi
ENSLACG00000013753	SNRPC	86	89.032	ENSETEG00000008268	-	76	86.667	Echinops_telfairi
ENSLACG00000013753	SNRPC	88	91.139	ENSEASG00005021007	SNRPC	100	88.125	Equus_asinus_asinus
ENSLACG00000013753	SNRPC	88	91.139	ENSECAG00000026848	SNRPC	100	88.125	Equus_caballus
ENSLACG00000013753	SNRPC	88	75.949	ENSEEUG00000014633	SNRPC	90	75.472	Erinaceus_europaeus
ENSLACG00000013753	SNRPC	89	81.250	ENSELUG00000000815	SNRPC	50	96.154	Esox_lucius
ENSLACG00000013753	SNRPC	88	85.443	ENSFCAG00000031775	-	78	79.699	Felis_catus
ENSLACG00000013753	SNRPC	89	91.250	ENSFCAG00000044077	-	100	88.125	Felis_catus
ENSLACG00000013753	SNRPC	88	89.873	ENSFALG00000003756	SNRPC	100	86.875	Ficedula_albicollis
ENSLACG00000013753	SNRPC	88	91.139	ENSFDAG00000018111	SNRPC	100	88.125	Fukomys_damarensis
ENSLACG00000013753	SNRPC	88	89.873	ENSGAGG00000003063	SNRPC	100	86.875	Gopherus_agassizii
ENSLACG00000013753	SNRPC	88	91.139	ENSGGOG00000012499	SNRPC	100	88.125	Gorilla_gorilla
ENSLACG00000013753	SNRPC	88	91.139	ENSHGLG00000013981	SNRPC	99	89.809	Heterocephalus_glaber_female
ENSLACG00000013753	SNRPC	88	76.582	ENSHGLG00000017741	-	100	76.250	Heterocephalus_glaber_female
ENSLACG00000013753	SNRPC	88	91.139	ENSHGLG00100009478	SNRPC	99	89.809	Heterocephalus_glaber_male
ENSLACG00000013753	SNRPC	88	76.582	ENSHGLG00100010786	-	100	76.250	Heterocephalus_glaber_male
ENSLACG00000013753	SNRPC	88	87.342	ENSHGLG00100017764	-	100	84.375	Heterocephalus_glaber_male
ENSLACG00000013753	SNRPC	88	91.139	ENSSTOG00000013786	SNRPC	100	88.125	Ictidomys_tridecemlineatus
ENSLACG00000013753	SNRPC	88	91.139	ENSJJAG00000021741	Snrpc	100	88.125	Jaculus_jaculus
ENSLACG00000013753	SNRPC	88	91.139	ENSLAFG00000013534	SNRPC	100	88.125	Loxodonta_africana
ENSLACG00000013753	SNRPC	88	90.506	ENSMFAG00000030525	-	100	87.500	Macaca_fascicularis
ENSLACG00000013753	SNRPC	88	91.139	ENSMFAG00000031764	-	100	88.125	Macaca_fascicularis
ENSLACG00000013753	SNRPC	87	91.720	ENSMMUG00000000869	-	95	89.809	Macaca_mulatta
ENSLACG00000013753	SNRPC	88	89.873	ENSMMUG00000039415	-	100	86.875	Macaca_mulatta
ENSLACG00000013753	SNRPC	88	82.278	ENSMMUG00000045425	-	75	80.833	Macaca_mulatta
ENSLACG00000013753	SNRPC	93	88.024	ENSMNEG00000032731	SNRPC	100	88.125	Macaca_nemestrina
ENSLACG00000013753	SNRPC	99	83.146	ENSMLEG00000033916	-	100	88.125	Mandrillus_leucophaeus
ENSLACG00000013753	SNRPC	86	67.097	ENSMLEG00000039724	-	67	55.303	Mandrillus_leucophaeus
ENSLACG00000013753	SNRPC	87	83.974	ENSMLEG00000040224	-	65	82.456	Mandrillus_leucophaeus
ENSLACG00000013753	SNRPC	88	86.709	ENSMGAG00000006054	SNRPC	100	85.625	Meleagris_gallopavo
ENSLACG00000013753	SNRPC	89	90.000	ENSMICG00000007339	-	100	86.250	Microcebus_murinus
ENSLACG00000013753	SNRPC	88	90.506	ENSMICG00000032183	-	100	87.500	Microcebus_murinus
ENSLACG00000013753	SNRPC	88	91.139	ENSMOCG00000017609	Snrpc	100	88.125	Microtus_ochrogaster
ENSLACG00000013753	SNRPC	88	91.139	ENSMODG00000013904	-	100	88.750	Monodelphis_domestica
ENSLACG00000013753	SNRPC	88	91.139	MGP_CAROLIEiJ_G0021308	Snrpc	100	88.125	Mus_caroli
ENSLACG00000013753	SNRPC	88	91.139	ENSMUSG00000024217	Snrpc	100	88.125	Mus_musculus
ENSLACG00000013753	SNRPC	89	91.250	ENSMPUG00000003210	SNRPC	100	89.375	Mustela_putorius_furo
ENSLACG00000013753	SNRPC	89	91.250	ENSMLUG00000002488	SNRPC	100	89.375	Myotis_lucifugus
ENSLACG00000013753	SNRPC	88	91.139	ENSNGAG00000019686	Snrpc	100	88.125	Nannospalax_galili
ENSLACG00000013753	SNRPC	87	92.308	ENSNLEG00000034810	SNRPC	100	88.125	Nomascus_leucogenys
ENSLACG00000013753	SNRPC	79	90.909	ENSMEUG00000009300	SNRPC	100	88.811	Notamacropus_eugenii
ENSLACG00000013753	SNRPC	88	91.139	ENSODEG00000017080	-	100	88.125	Octodon_degus
ENSLACG00000013753	SNRPC	88	89.873	ENSODEG00000019633	-	100	86.875	Octodon_degus
ENSLACG00000013753	SNRPC	88	91.139	ENSODEG00000018985	-	100	88.125	Octodon_degus
ENSLACG00000013753	SNRPC	88	91.139	ENSODEG00000020370	-	100	88.125	Octodon_degus
ENSLACG00000013753	SNRPC	88	90.506	ENSODEG00000020201	-	100	87.500	Octodon_degus
ENSLACG00000013753	SNRPC	79	88.435	ENSOANG00000003405	SNRPC	99	86.395	Ornithorhynchus_anatinus
ENSLACG00000013753	SNRPC	88	89.241	ENSOCUG00000023292	-	100	86.250	Oryctolagus_cuniculus
ENSLACG00000013753	SNRPC	88	91.139	ENSOCUG00000026668	-	100	88.125	Oryctolagus_cuniculus
ENSLACG00000013753	SNRPC	88	90.506	ENSOCUG00000026430	-	99	86.335	Oryctolagus_cuniculus
ENSLACG00000013753	SNRPC	87	91.667	ENSOGAG00000008755	-	90	86.905	Otolemur_garnettii
ENSLACG00000013753	SNRPC	86	76.623	ENSOGAG00000028405	-	87	74.265	Otolemur_garnettii
ENSLACG00000013753	SNRPC	88	89.241	ENSOGAG00000026269	-	100	86.250	Otolemur_garnettii
ENSLACG00000013753	SNRPC	88	91.139	ENSOARG00000010823	SNRPC	100	88.125	Ovis_aries
ENSLACG00000013753	SNRPC	88	91.139	ENSPPAG00000043871	SNRPC	100	88.125	Pan_paniscus
ENSLACG00000013753	SNRPC	89	91.250	ENSPPRG00000008647	-	100	88.125	Panthera_pardus
ENSLACG00000013753	SNRPC	89	91.250	ENSPTIG00000021867	-	100	88.125	Panthera_tigris_altaica
ENSLACG00000013753	SNRPC	88	91.139	ENSPTRG00000018070	SNRPC	100	88.125	Pan_troglodytes
ENSLACG00000013753	SNRPC	93	88.024	ENSPANG00000022802	-	100	88.125	Papio_anubis
ENSLACG00000013753	SNRPC	88	81.013	ENSPANG00000018228	-	70	80.000	Papio_anubis
ENSLACG00000013753	SNRPC	88	90.506	ENSPSIG00000004876	SNRPC	77	88.050	Pelodiscus_sinensis
ENSLACG00000013753	SNRPC	88	91.139	ENSPEMG00000010773	Snrpc	100	88.125	Peromyscus_maniculatus_bairdii
ENSLACG00000013753	SNRPC	95	87.135	ENSPCAG00000016885	SNRPC	97	83.429	Procavia_capensis
ENSLACG00000013753	SNRPC	88	91.772	ENSPCOG00000004904	SNRPC	100	88.125	Propithecus_coquereli
ENSLACG00000013753	SNRPC	93	86.905	ENSPVAG00000015597	SNRPC	91	85.119	Pteropus_vampyrus
ENSLACG00000013753	SNRPC	88	91.139	ENSRNOG00000000493	Snrpc	100	88.125	Rattus_norvegicus
ENSLACG00000013753	SNRPC	93	77.586	ENSRBIG00000036353	-	62	83.333	Rhinopithecus_bieti
ENSLACG00000013753	SNRPC	93	88.024	ENSRBIG00000037567	-	100	88.125	Rhinopithecus_bieti
ENSLACG00000013753	SNRPC	88	91.139	ENSRBIG00000014819	-	100	88.125	Rhinopithecus_bieti
ENSLACG00000013753	SNRPC	88	90.506	ENSRBIG00000022998	-	100	87.500	Rhinopithecus_bieti
ENSLACG00000013753	SNRPC	87	92.308	ENSRROG00000041300	SNRPC	100	88.125	Rhinopithecus_roxellana
ENSLACG00000013753	SNRPC	87	92.308	ENSSBOG00000031528	-	100	88.125	Saimiri_boliviensis_boliviensis
ENSLACG00000013753	SNRPC	83	75.168	ENSSBOG00000032361	-	64	72.642	Saimiri_boliviensis_boliviensis
ENSLACG00000013753	SNRPC	86	77.419	ENSSBOG00000023189	-	71	77.236	Saimiri_boliviensis_boliviensis
ENSLACG00000013753	SNRPC	88	91.139	ENSSHAG00000000945	-	87	89.873	Sarcophilus_harrisii
ENSLACG00000013753	SNRPC	88	90.506	ENSSPUG00000002502	SNRPC	100	88.125	Sphenodon_punctatus
ENSLACG00000013753	SNRPC	88	91.139	ENSSSCG00000001531	SNRPC	100	88.125	Sus_scrofa
ENSLACG00000013753	SNRPC	88	90.506	ENSTGUG00000001773	SNRPC	99	88.050	Taeniopygia_guttata
ENSLACG00000013753	SNRPC	86	84.516	ENSTBEG00000013022	-	87	84.672	Tupaia_belangeri
ENSLACG00000013753	SNRPC	79	67.832	ENSTBEG00000016759	-	79	67.832	Tupaia_belangeri
ENSLACG00000013753	SNRPC	98	84.746	ENSTTRG00000007827	SNRPC	92	86.310	Tursiops_truncatus
ENSLACG00000013753	SNRPC	88	89.873	ENSVVUG00000021947	-	100	86.875	Vulpes_vulpes
ENSLACG00000013753	SNRPC	86	86.452	ENSVVUG00000010467	-	87	84.713	Vulpes_vulpes
ENSLACG00000013753	SNRPC	88	86.709	ENSXETG00000024721	snrpc	100	84.375	Xenopus_tropicalis