EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000013913 (Gene tree)
Gene ID: 102354080
Gene Symbol: SCAF4
Alias: DKFZp434E098|KIAA1172|SFRS15|SRA4
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 68884 bases
Position: chrJH127308.1:928028-996911
Accession: 102354080
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000015799	RRM_1	PF00076.22	5.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000015909	SCAF4-201	6076	XM_006001944	ENSLACP00000015799	1077 (aa)	XP_006002006	H3B1M8

Gene Model

Click here to download ENSLACG00000013913's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000013913's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000013913	SCAF4	73	46.667	ENSLACG00000001394	SCAF8	60	48.432

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000013913	SCAF4	59	69.749	ENSG00000156304	SCAF4	98	60.351	Homo_sapiens
ENSLACG00000013913	SCAF4	51	57.738	ENSATEG00000006959	SCAF8	56	48.163	Anabas_testudineus
ENSLACG00000013913	SCAF4	100	64.168	ENSAPLG00000002509	SCAF4	97	62.044	Anas_platyrhynchos
ENSLACG00000013913	SCAF4	93	63.797	ENSACAG00000002569	SCAF4	81	65.470	Anolis_carolinensis
ENSLACG00000013913	SCAF4	59	69.749	ENSANAG00000037494	SCAF4	98	60.210	Aotus_nancymaae
ENSLACG00000013913	SCAF4	93	49.904	ENSAMXG00000008585	scaf4a	52	45.120	Astyanax_mexicanus
ENSLACG00000013913	SCAF4	59	67.762	ENSBTAG00000018855	SCAF4	97	60.683	Bos_taurus
ENSLACG00000013913	SCAF4	59	70.016	ENSCJAG00000008993	SCAF4	95	64.828	Callithrix_jacchus
ENSLACG00000013913	SCAF4	59	66.667	ENSCAFG00000008863	SCAF4	97	61.871	Canis_familiaris
ENSLACG00000013913	SCAF4	59	68.030	ENSCAFG00020026019	SCAF4	99	58.977	Canis_lupus_dingo
ENSLACG00000013913	SCAF4	59	65.569	ENSCHIG00000008385	SCAF4	97	60.805	Capra_hircus
ENSLACG00000013913	SCAF4	59	70.189	ENSTSYG00000011344	SCAF4	98	60.534	Carlito_syrichta
ENSLACG00000013913	SCAF4	59	67.647	ENSCPOG00000012443	SCAF4	96	60.492	Cavia_porcellus
ENSLACG00000013913	SCAF4	59	70.978	ENSCCAG00000033727	SCAF4	98	60.281	Cebus_capucinus
ENSLACG00000013913	SCAF4	59	69.401	ENSCATG00000030379	SCAF4	98	60.574	Cercocebus_atys
ENSLACG00000013913	SCAF4	61	48.921	ENSCLAG00000004910	SCAF8	54	42.250	Chinchilla_lanigera
ENSLACG00000013913	SCAF4	59	69.327	ENSCSAG00000009438	SCAF4	97	60.889	Chlorocebus_sabaeus
ENSLACG00000013913	SCAF4	59	69.592	ENSCANG00000029847	SCAF4	98	60.404	Colobus_angolensis_palliatus
ENSLACG00000013913	SCAF4	59	62.921	ENSCGRG00001020821	Scaf4	92	63.085	Cricetulus_griseus_chok1gshd
ENSLACG00000013913	SCAF4	59	63.675	ENSCGRG00000014360	Scaf4	91	63.085	Cricetulus_griseus_crigri
ENSLACG00000013913	SCAF4	100	42.224	ENSCSEG00000019549	scaf4a	84	48.907	Cynoglossus_semilaevis
ENSLACG00000013913	SCAF4	60	62.751	ENSDNOG00000019014	SCAF4	91	58.596	Dasypus_novemcinctus
ENSLACG00000013913	SCAF4	95	50.830	ENSETEG00000000583	SCAF4	96	51.493	Echinops_telfairi
ENSLACG00000013913	SCAF4	59	68.289	ENSEASG00005007756	SCAF4	97	61.545	Equus_asinus_asinus
ENSLACG00000013913	SCAF4	59	68.289	ENSECAG00000014248	SCAF4	97	61.491	Equus_caballus
ENSLACG00000013913	SCAF4	60	46.953	ENSELUG00000002779	SCAF8	77	48.276	Esox_lucius
ENSLACG00000013913	SCAF4	59	68.429	ENSFCAG00000002228	SCAF4	98	60.950	Felis_catus
ENSLACG00000013913	SCAF4	59	65.522	ENSFDAG00000017780	SCAF4	98	59.538	Fukomys_damarensis
ENSLACG00000013913	SCAF4	60	55.242	ENSFHEG00000007634	scaf4b	66	54.435	Fundulus_heteroclitus
ENSLACG00000013913	SCAF4	83	47.073	ENSFHEG00000017866	scaf4a	53	45.503	Fundulus_heteroclitus
ENSLACG00000013913	SCAF4	100	64.991	ENSGALG00000033965	SCAF4	97	63.047	Gallus_gallus
ENSLACG00000013913	SCAF4	76	49.096	ENSGACG00000020580	scaf4a	77	50.529	Gasterosteus_aculeatus
ENSLACG00000013913	SCAF4	92	64.441	ENSGGOG00000015557	SCAF4	96	63.514	Gorilla_gorilla
ENSLACG00000013913	SCAF4	75	49.330	ENSHBUG00000007920	scaf4a	84	48.649	Haplochromis_burtoni
ENSLACG00000013913	SCAF4	64	49.638	ENSHBUG00000019537	SCAF8	51	42.609	Haplochromis_burtoni
ENSLACG00000013913	SCAF4	58	61.250	ENSSTOG00000004450	SCAF4	99	57.143	Ictidomys_tridecemlineatus
ENSLACG00000013913	SCAF4	58	71.086	ENSJJAG00000019447	Scaf4	97	59.610	Jaculus_jaculus
ENSLACG00000013913	SCAF4	65	54.472	ENSKMAG00000005742	scaf4b	66	52.439	Kryptolebias_marmoratus
ENSLACG00000013913	SCAF4	85	48.859	ENSLBEG00000014675	scaf4a	86	50.273	Labrus_bergylta
ENSLACG00000013913	SCAF4	98	59.724	ENSLOCG00000009162	scaf4a	95	57.051	Lepisosteus_oculatus
ENSLACG00000013913	SCAF4	72	49.819	ENSLOCG00000016856	SCAF8	57	47.203	Lepisosteus_oculatus
ENSLACG00000013913	SCAF4	59	73.705	ENSLAFG00000010710	SCAF4	96	62.455	Loxodonta_africana
ENSLACG00000013913	SCAF4	59	69.401	ENSMFAG00000037668	SCAF4	97	60.630	Macaca_fascicularis
ENSLACG00000013913	SCAF4	59	69.279	ENSMMUG00000001712	SCAF4	98	59.669	Macaca_mulatta
ENSLACG00000013913	SCAF4	59	69.401	ENSMNEG00000032966	SCAF4	97	60.577	Macaca_nemestrina
ENSLACG00000013913	SCAF4	59	69.279	ENSMLEG00000039674	SCAF4	98	59.773	Mandrillus_leucophaeus
ENSLACG00000013913	SCAF4	57	49.845	ENSMAMG00000013223	scaf4a	63	50.449	Mastacembelus_armatus
ENSLACG00000013913	SCAF4	75	49.897	ENSMZEG00005024349	scaf4a	75	48.687	Maylandia_zebra
ENSLACG00000013913	SCAF4	100	65.328	ENSMGAG00000014515	SCAF4	97	63.024	Meleagris_gallopavo
ENSLACG00000013913	SCAF4	59	66.461	ENSMAUG00000013307	Scaf4	98	60.052	Mesocricetus_auratus
ENSLACG00000013913	SCAF4	59	69.558	ENSMICG00000005256	SCAF4	97	61.478	Microcebus_murinus
ENSLACG00000013913	SCAF4	58	66.878	ENSMOCG00000012087	Scaf4	96	59.015	Microtus_ochrogaster
ENSLACG00000013913	SCAF4	99	63.291	ENSMODG00000021040	SCAF4	96	62.726	Monodelphis_domestica
ENSLACG00000013913	SCAF4	56	57.021	ENSMALG00000013825	scaf4a	50	58.730	Monopterus_albus
ENSLACG00000013913	SCAF4	59	64.656	MGP_CAROLIEiJ_G0020944	Scaf4	90	64.286	Mus_caroli
ENSLACG00000013913	SCAF4	59	64.095	ENSMUSG00000022983	Scaf4	89	63.736	Mus_musculus
ENSLACG00000013913	SCAF4	59	63.675	MGP_PahariEiJ_G0016649	Scaf4	90	63.686	Mus_pahari
ENSLACG00000013913	SCAF4	59	64.831	MGP_SPRETEiJ_G0021850	Scaf4	97	55.858	Mus_spretus
ENSLACG00000013913	SCAF4	59	68.966	ENSMPUG00000001078	SCAF4	97	61.116	Mustela_putorius_furo
ENSLACG00000013913	SCAF4	59	62.974	ENSMLUG00000011472	SCAF4	61	55.951	Myotis_lucifugus
ENSLACG00000013913	SCAF4	59	71.807	ENSNGAG00000005214	Scaf4	96	60.349	Nannospalax_galili
ENSLACG00000013913	SCAF4	59	69.436	ENSNLEG00000003569	SCAF4	98	60.526	Nomascus_leucogenys
ENSLACG00000013913	SCAF4	77	62.201	ENSOPRG00000007016	SCAF4	79	59.716	Ochotona_princeps
ENSLACG00000013913	SCAF4	86	51.037	ENSONIG00000004687	scaf4a	84	48.509	Oreochromis_niloticus
ENSLACG00000013913	SCAF4	59	68.536	ENSOCUG00000008336	SCAF4	97	59.513	Oryctolagus_cuniculus
ENSLACG00000013913	SCAF4	81	54.167	ENSORLG00020011857	scaf4a	74	54.545	Oryzias_latipes_hni
ENSLACG00000013913	SCAF4	81	53.125	ENSORLG00015017880	scaf4a	73	53.846	Oryzias_latipes_hsok
ENSLACG00000013913	SCAF4	59	57.063	ENSOGAG00000014653	SCAF4	92	58.831	Otolemur_garnettii
ENSLACG00000013913	SCAF4	59	67.079	ENSOARG00000013894	SCAF4	96	60.767	Ovis_aries
ENSLACG00000013913	SCAF4	59	69.749	ENSPPAG00000028535	SCAF4	99	59.965	Pan_paniscus
ENSLACG00000013913	SCAF4	59	68.487	ENSPPRG00000000635	SCAF4	98	60.969	Panthera_pardus
ENSLACG00000013913	SCAF4	59	69.749	ENSPTRG00000013848	SCAF4	99	59.965	Pan_troglodytes
ENSLACG00000013913	SCAF4	59	69.279	ENSPANG00000017332	SCAF4	98	60.424	Papio_anubis
ENSLACG00000013913	SCAF4	100	64.808	ENSPSIG00000014242	SCAF4	95	61.883	Pelodiscus_sinensis
ENSLACG00000013913	SCAF4	60	71.163	ENSPCIG00000028183	SCAF4	88	61.685	Phascolarctos_cinereus
ENSLACG00000013913	SCAF4	64	48.905	ENSPFOG00000003261	scaf4b	67	47.244	Poecilia_formosa
ENSLACG00000013913	SCAF4	67	52.823	ENSPLAG00000004403	-	78	50.588	Poecilia_latipinna
ENSLACG00000013913	SCAF4	61	56.592	ENSPLAG00000001972	scaf4a	78	51.323	Poecilia_latipinna
ENSLACG00000013913	SCAF4	67	53.226	ENSPMEG00000006666	-	69	50.198	Poecilia_mexicana
ENSLACG00000013913	SCAF4	59	69.592	ENSPPYG00000011355	SCAF4	98	60.873	Pongo_abelii
ENSLACG00000013913	SCAF4	52	75.781	ENSPCAG00000009998	SCAF4	90	73.256	Procavia_capensis
ENSLACG00000013913	SCAF4	59	69.558	ENSPCOG00000018710	SCAF4	97	61.552	Propithecus_coquereli
ENSLACG00000013913	SCAF4	59	68.132	ENSPVAG00000005220	SCAF4	97	62.115	Pteropus_vampyrus
ENSLACG00000013913	SCAF4	63	50.373	ENSPVAG00000005582	SCAF8	50	48.507	Pteropus_vampyrus
ENSLACG00000013913	SCAF4	57	73.234	ENSRNOG00000002104	Scaf4	78	65.782	Rattus_norvegicus
ENSLACG00000013913	SCAF4	59	67.508	ENSRBIG00000040007	SCAF4	61	60.000	Rhinopithecus_bieti
ENSLACG00000013913	SCAF4	59	69.592	ENSRROG00000029488	SCAF4	99	60.601	Rhinopithecus_roxellana
ENSLACG00000013913	SCAF4	99	61.141	ENSSHAG00000001581	SCAF4	97	63.237	Sarcophilus_harrisii
ENSLACG00000013913	SCAF4	88	48.649	ENSSFOG00015006338	scaf4a	53	55.229	Scleropages_formosus
ENSLACG00000013913	SCAF4	67	56.275	ENSSMAG00000003738	scaf4b	74	55.061	Scophthalmus_maximus
ENSLACG00000013913	SCAF4	50	58.468	ENSSDUG00000012380	scaf4b	74	57.895	Seriola_dumerili
ENSLACG00000013913	SCAF4	58	69.475	ENSSARG00000009994	SCAF4	96	60.699	Sorex_araneus
ENSLACG00000013913	SCAF4	59	67.697	ENSSSCG00000021023	SCAF4	97	58.925	Sus_scrofa
ENSLACG00000013913	SCAF4	65	67.797	ENSTGUG00000013464	SCAF4	98	58.262	Taeniopygia_guttata
ENSLACG00000013913	SCAF4	59	66.112	ENSTTRG00000010963	SCAF4	97	61.004	Tursiops_truncatus
ENSLACG00000013913	SCAF4	59	68.553	ENSUAMG00000008860	SCAF4	96	60.866	Ursus_americanus
ENSLACG00000013913	SCAF4	59	68.770	ENSUMAG00000016962	SCAF4	98	62.489	Ursus_maritimus
ENSLACG00000013913	SCAF4	59	66.667	ENSVVUG00000002953	SCAF4	98	61.871	Vulpes_vulpes
ENSLACG00000013913	SCAF4	99	52.915	ENSXETG00000007351	scaf4	96	53.269	Xenopus_tropicalis